Clone Name	rbaet09h03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun...	42	3e-04
2	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	41	6e-04
3	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	40	0.001
4	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	40	0.001
5	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	40	0.001
6	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	40	0.001
7	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	40	0.001
8	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	40	0.001
9	RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...	40	0.002
10	RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...	39	0.002
11	RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...	39	0.002
12	RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...	39	0.002
13	RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...	37	0.009
14	MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (C...	35	0.033
15	HSPC_ELECI (P83183) Cysteine-rich protamine	35	0.033
16	GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Co...	33	0.16
17	AGRN_RAT (P25304) Agrin precursor	32	0.47
18	MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich...	31	0.62
19	MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich p...	31	0.62
20	VTS1_DEBHA (Q6BSL1) Protein VTS1	31	0.80
21	PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (...	30	1.4
22	AF2_GRASP (P61409) Alpha mechanotoxin (Peptide GsAF II)	30	1.8
23	AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Iso...	30	1.8
24	ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)	29	2.3
25	GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Co...	29	2.3
26	MT_PARLI (P80367) Metallothionein (MT)	29	2.3
27	HSP1_PTEHP (Q8WNZ9) Sperm protamine P1	29	2.3
28	AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fra...	29	2.3
29	CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)	29	2.3
30	CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 pr...	29	2.3
31	ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finge...	29	2.3
32	MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich...	29	3.1
33	HSP1_RAT (P10118) Sperm protamine P1 (Cysteine-rich protamine)	29	3.1
34	HSP1_MOUSE (P02319) Sperm protamine P1 (Cysteine-rich protamine)	29	3.1
35	CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 pr...	29	3.1
36	VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)	29	3.1
37	KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-ass...	28	4.0
38	ZNF22_RAT (Q9ERU2) Zinc finger protein 22 (Kruppel-type zinc fin...	28	4.0
39	ZNF22_MOUSE (Q9ERU3) Zinc finger protein 22 (Zinc finger protein...	28	4.0
40	NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)	28	4.0
41	KHSE_SYNPX (Q7U659) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)	28	4.0
42	FBLN1_MOUSE (Q08879) Fibulin-1 precursor (Basement-membrane prot...	28	4.0
43	SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma sel...	28	4.0
44	CAPG_STAAU (P39856) Protein capG	28	4.0
45	ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)	28	4.0
46	RTPT_YEAST (P17558) 40S ribosomal protein PET123, mitochondrial ...	28	5.2
47	MT_STENE (P55953) Metallothionein (MT)	28	5.2
48	MED2_YEAST (Q12124) RNA polymerase II mediator complex subunit 2	28	5.2
49	GRN1_CYPCA (P81013) Granulin-1	28	5.2
50	NDC1_XENLA (Q6AX31) Nucleoporin NDC1 (xNDC1) (Transmembrane prot...	28	5.2
51	ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiest...	28	5.2
52	Y330_BUCBP (Q89AG4) UPF0176 protein bbp_330	28	6.8
53	PLXA3_HUMAN (P51805) Plexin-A3 precursor (Plexin-4) (Semaphorin ...	28	6.8
54	BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)	28	6.8
55	HSP1_RHIHA (Q8WNZ6) Sperm protamine P1	28	6.8
56	AGI_ORYSA (P11219) Lectin precursor (Agglutinin) [Contains: Lect...	28	6.8
57	LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late en...	28	6.8
58	LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late en...	28	6.8
59	CCD70_MOUSE (Q9D9B0) Coiled-coil domain-containing protein 70 pr...	28	6.8
60	GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC...	27	8.9
61	TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC...	27	8.9
62	PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)	27	8.9
63	HSP1_TRAJO (Q8MJS8) Sperm protamine P1	27	8.9
64	HSP1_RABIT (P10119) Sperm protamine P1 (Cysteine-rich protamine)	27	8.9
65	HSP1_PONPY (P35310) Sperm protamine P1 (Cysteine-rich protamine)	27	8.9
66	HSP1_NATST (Q8WNZ3) Sperm protamine P1	27	8.9
67	HSP1_NATMI (Q8WNZ4) Sperm protamine P1	27	8.9
68	HSP1_MYODA (Q8WNY8) Sperm protamine P1	27	8.9
69	ZDHC9_PONPY (Q5R5J8) Palmitoyltransferase ZDHHC9 (EC 2.3.1.-) (Z...	27	8.9
70	PNT2_DROME (P51023) ETS-like protein pointed, isoform P2 (D-ETS-2)	27	8.9
71	LCE1D_HUMAN (Q5T752) Late cornified envelope protein 1D (Late en...	27	8.9
72	KHSE_PROMP (Q7V289) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)	27	8.9
73	HRH1_CAVPO (P31389) Histamine H1 receptor	27	8.9
74	ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1	27	8.9
75	BORIS_HUMAN (Q8NI51) Transcriptional repressor CTCFL (CCCTC-bind...	27	8.9
76	EI2B1_ARCFU (O29877) Putative translation initiation factor eIF-...	27	8.9
77	ANTA_HAEOF (P15358) Antistasin precursor (ATS) (Blood coagulatio...	27	8.9

---

>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = +1

Query: 139  NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
            NQ+  ++++S Y  + P Y + +P Y+  +P ++  SP Y+  +P ++  S  Y   + +
Sbjct: 2272 NQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2331

Query: 319  YGIVAPSYDIVVPR 360
            Y   +P Y    P+
Sbjct: 2332 YSPTSPKYSPTSPK 2345



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = +1

Query: 115  HELLGGRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSL 294
            + +   + N + ++  S + Y   P  D+ +P   I    HNI SP Y+  +P +N  + 
Sbjct: 2207 YNVFSPKPNINNNVIQSPNIYSPNPMLDIFSPKPQIN---HNIYSPSYSPTSPTYNANNA 2263

Query: 295  SYDIAA-----------TRYGIVAPSYDIVVPR 360
             Y   +           ++Y +++P Y +  P+
Sbjct: 2264 YYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPK 2296

---

>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +1

Query: 130  GRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIA 309
            G G  S   S SS  Y   P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   
Sbjct: 1550 GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSAT 1609

Query: 310  ATRYGIVAPSYDIVVP 357
            +  Y   +PSY    P
Sbjct: 1610 SPSYSPTSPSYSPTSP 1625



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +1

Query: 130  GRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIA 309
            G      ++  S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   
Sbjct: 1564 GYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPT 1623

Query: 310  ATRYGIVAPSYDIVVP 357
            +  Y   +PSY    P
Sbjct: 1624 SPSYSPTSPSYSPTSP 1639



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662

Query: 343  DIVVP 357
                P
Sbjct: 1663 SPTSP 1667



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648

Query: 343  DIVVP 357
                P
Sbjct: 1649 SPTSP 1653



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641

Query: 343  DIVVP 357
                P
Sbjct: 1642 SPTSP 1646



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            ++ + S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664

Query: 328  VAPSYDIVVP 357
             +PSY    P
Sbjct: 1665 TSPSYSPTSP 1674



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655

Query: 343  DIVVP 357
                P
Sbjct: 1656 SPTSP 1660



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746

Query: 343  DIVVP 357
                P
Sbjct: 1747 SPTSP 1751



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739

Query: 343  DIVVP 357
                P
Sbjct: 1740 SPTSP 1744



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732

Query: 343  DIVVP 357
                P
Sbjct: 1733 SPTSP 1737



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725

Query: 343  DIVVP 357
                P
Sbjct: 1726 SPTSP 1730



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718

Query: 343  DIVVP 357
                P
Sbjct: 1719 SPTSP 1723



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

Query: 343  DIVVP 357
                P
Sbjct: 1712 SPTSP 1716



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704

Query: 343  DIVVP 357
                P
Sbjct: 1705 SPTSP 1709



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697

Query: 343  DIVVP 357
                P
Sbjct: 1698 SPTSP 1702



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 343  DIVVP 357
                P
Sbjct: 1691 SPTSP 1695



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683

Query: 343  DIVVP 357
                P
Sbjct: 1684 SPTSP 1688



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676

Query: 343  DIVVP 357
                P
Sbjct: 1677 SPTSP 1681



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PS
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752

---

>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1627 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTY 1686

Query: 343  DIVVP 357
                P
Sbjct: 1687 SPTSP 1691



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 160  LSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PS
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 340  YDIVVPR 360
            Y    PR
Sbjct: 1672 YSPSSPR 1678



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1620 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679

Query: 343  DIVVP 357
                P
Sbjct: 1680 SPTSP 1684



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1655 SPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY 1714

Query: 343  D 345
            +
Sbjct: 1715 E 1715



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1648 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1707

Query: 343  DIVVP 357
                P
Sbjct: 1708 SPTSP 1712



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1641 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1700

Query: 343  DIVVP 357
                P
Sbjct: 1701 SPTSP 1705



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +P+Y
Sbjct: 1634 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTY 1693

Query: 343  DIVVP 357
                P
Sbjct: 1694 SPTSP 1698



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  +    P Y   +P Y+  +P H+  SP    V+P ++  S SY   +  Y   +PSY
Sbjct: 1582 SPGFSMTSPHYSPTSPSYSPTSPAHHGQSP----VSPSYSPTSPSYSPTSPSYSPTSPSY 1637

Query: 343  DIVVP 357
                P
Sbjct: 1638 SPTSP 1642



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIH---NMVSLSYDIAATRYGIVAPSYDIVVP 357
            Y   +P +++ +P ++  SP Y+  +P H   + VS SY   +  Y   +PSY    P
Sbjct: 1578 YSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSP 1635



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P+Y   +P Y+  +P +   SP YN  +P     S  Y   +  Y  
Sbjct: 1730 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP-RAFSSPQYSPTSPTYSP 1788

Query: 328  VAPSY 342
             +PSY
Sbjct: 1789 TSPSY 1793



 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PS
Sbjct: 1662 SPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPS 1720



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            Y   +P Y+  +P ++  SP Y+  +P ++  S  Y  ++  Y   +P+Y+   PR
Sbjct: 1717 YSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1772



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAP 336
            P+Y   +P Y+  +P ++  SP Y+  +P ++  S +Y  ++  Y   +P
Sbjct: 1722 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1771



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +N  S     ++ +Y   +P+Y
Sbjct: 1728 SPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTS-PRAFSSPQYSPTSPTY 1786

Query: 343  DIVVP 357
                P
Sbjct: 1787 SPTSP 1791



 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 178  FVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            F  P+Y   +P Y+  +P +   SP Y+  +P +          + +Y   +P+Y
Sbjct: 1774 FSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTY 1828

---

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  YG  +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1727

Query: 343  D 345
            +
Sbjct: 1728 N 1728



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1693 SPTSPA-YSPTSPGYS 1707



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1678

Query: 343  DIVVP 357
                P
Sbjct: 1679 SPTSP 1683



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SPGY+  +P ++  S SY   +  Y   +PSY
Sbjct: 1556 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1615

Query: 343  DIVVP 357
                P
Sbjct: 1616 SPTSP 1620



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1671

Query: 343  DIVVP 357
                P
Sbjct: 1672 SPTSP 1676



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1664

Query: 343  DIVVP 357
                P
Sbjct: 1665 SPTSP 1669



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720

Query: 343  DIVVPR*N 366
                P  N
Sbjct: 1721 GPTSPSYN 1728



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1579 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638

Query: 328  VAPSYDIVVP 357
             +P+Y    P
Sbjct: 1639 TSPAYSPTSP 1648



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629

Query: 343  DIVVP 357
                P
Sbjct: 1630 SPTSP 1634



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 136  GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
            G  +   S S  Y    P Y   +P Y+  +P ++  SPGY+  +P ++  S  Y   + 
Sbjct: 1533 GGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1592

Query: 316  RYGIVAPSYDIVVP 357
             Y   +PSY    P
Sbjct: 1593 AYSPTSPSYSPTSP 1606



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657

Query: 343  DIVVP 357
                P
Sbjct: 1658 SPTSP 1662



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1591 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650

Query: 343  DIVVP 357
                P
Sbjct: 1651 SPTSP 1655



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1577 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636

Query: 343  DIVVP 357
                P
Sbjct: 1637 SPTSP 1641



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1654 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1647 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622

Query: 343  DIVVP 357
                P
Sbjct: 1623 SPTSP 1627



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1549 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1608

Query: 343  DIVVP 357
                P
Sbjct: 1609 SPTSP 1613



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRY 321
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY+  + +Y
Sbjct: 1682 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 145  STHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYG 324
            +  +S +S Y    P Y   +P Y+  +P ++  SP Y+  +P  +  S  Y  +A  Y 
Sbjct: 1744 NARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSA-GYS 1802

Query: 325  IVAPSY 342
               P Y
Sbjct: 1803 PTLPGY 1808

---

>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127  GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
            GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665

Query: 304  IAATRYGIVAPSYDIVVP 357
              +  Y   +PSY    P
Sbjct: 1666 PTSPSYSPTSPSYSPTSP 1683



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741

Query: 343  DIVVP 357
                P
Sbjct: 1742 SPTSP 1746



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734

Query: 343  DIVVP 357
                P
Sbjct: 1735 SPTSP 1739



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727

Query: 343  DIVVP 357
                P
Sbjct: 1728 SPTSP 1732



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720

Query: 343  DIVVP 357
                P
Sbjct: 1721 SPTSP 1725



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 343  DIVVPR 360
                PR
Sbjct: 1805 SPSSPR 1810



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755

Query: 343  DIVVP 357
                P
Sbjct: 1756 TPTSP 1760



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748

Query: 343  DIVVP 357
                P
Sbjct: 1749 SPTSP 1753



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762

Query: 343  DIVVP 357
                P
Sbjct: 1763 SPTSP 1767



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797

Query: 343  DIVVP 357
                P
Sbjct: 1798 SPTSP 1802



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769

Query: 343  DIVVP 357
                P
Sbjct: 1770 SPTSP 1774



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSP 1876

Query: 328  VAPSYDIVVPR 360
             +P+Y    P+
Sbjct: 1877 TSPTYSPTTPK 1887



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790

Query: 343  DIVVP 357
                P
Sbjct: 1791 SPTSP 1795



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776

Query: 343  DIVVP 357
                P
Sbjct: 1777 TPTSP 1781



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783

Query: 343  DIVVP 357
                P
Sbjct: 1784 SPTSP 1788



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKY 1860

Query: 343  DIVVPR 360
                P+
Sbjct: 1861 SPTSPK 1866



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923

Query: 343  DIVVP 357
                P
Sbjct: 1924 SPTSP 1928



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916

Query: 343  DIVVPR 360
                P+
Sbjct: 1917 SPTSPK 1922



 Score = 34.7 bits (78), Expect = 0.056
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832

Query: 343  DIVVPR 360
                P+
Sbjct: 1833 SPTSPK 1838



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 1878 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 1937

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1938 STYSP-----TSPGYS 1948



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895

Query: 343  DIVVP 357
                P
Sbjct: 1896 SPTSP 1900



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888

Query: 343  DIVVP 357
                P
Sbjct: 1889 SPTSP 1893



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            P Y   +P Y+  +P ++  SP Y   +P ++  S  Y  A+ +Y   +P Y    P+
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPK 1873



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 343  DIVVP 357
                P
Sbjct: 1840 TPTSP 1844



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 1843 SPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902

Query: 343  DIVVPR 360
                P+
Sbjct: 1903 TPTSPK 1908



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 1850 SPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909

Query: 343  DIVVP 357
                P
Sbjct: 1910 SPTSP 1914



 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874

Query: 343  DIVVP 357
                P
Sbjct: 1875 SPTSP 1879



 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853

Query: 343  DIVVPR 360
                P+
Sbjct: 1854 TPASPK 1859



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
            T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 1880 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 1939

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1940 YSPTSPGYSPTSP 1952

---

>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127  GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
            GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 1606 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1665

Query: 304  IAATRYGIVAPSYDIVVP 357
              +  Y   +PSY    P
Sbjct: 1666 PTSPSYSPTSPSYSPTSP 1683



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1682 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741

Query: 343  DIVVP 357
                P
Sbjct: 1742 SPTSP 1746



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1675 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734

Query: 343  DIVVP 357
                P
Sbjct: 1735 SPTSP 1739



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727

Query: 343  DIVVP 357
                P
Sbjct: 1728 SPTSP 1732



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720

Query: 343  DIVVP 357
                P
Sbjct: 1721 SPTSP 1725



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVP 357
                P
Sbjct: 1714 SPTSP 1718



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804

Query: 343  DIVVPR 360
                PR
Sbjct: 1805 SPSSPR 1810



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755

Query: 343  DIVVP 357
                P
Sbjct: 1756 TPTSP 1760



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1689 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748

Query: 343  DIVVP 357
                P
Sbjct: 1749 SPTSP 1753



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762

Query: 343  DIVVP 357
                P
Sbjct: 1763 SPTSP 1767



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1759 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 1738 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797

Query: 343  DIVVP 357
                P
Sbjct: 1798 SPTSP 1802



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769

Query: 343  DIVVP 357
                P
Sbjct: 1770 SPTSP 1774



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 1876

Query: 328  VAPSYDIVVPR 360
             +P+Y    P+
Sbjct: 1877 TSPTYSPTTPK 1887



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790

Query: 343  DIVVP 357
                P
Sbjct: 1791 SPTSP 1795



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 1717 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776

Query: 343  DIVVP 357
                P
Sbjct: 1777 TPTSP 1781



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 1724 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783

Query: 343  DIVVP 357
                P
Sbjct: 1784 SPTSP 1788



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 1801 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1860

Query: 343  DIVVPR 360
                P+
Sbjct: 1861 SPTSPK 1866



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923

Query: 343  DIVVP 357
                P
Sbjct: 1924 SPTSP 1928



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916

Query: 343  DIVVPR 360
                P+
Sbjct: 1917 SPTSPK 1922



 Score = 34.7 bits (78), Expect = 0.056
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 1773 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832

Query: 343  DIVVPR 360
                P+
Sbjct: 1833 SPTSPK 1838



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 1878 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 1937

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1938 STYSP-----TSPGYS 1948



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 1836 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895

Query: 343  DIVVP 357
                P
Sbjct: 1896 SPTSP 1900



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888

Query: 343  DIVVP 357
                P
Sbjct: 1889 SPTSP 1893



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839

Query: 343  DIVVP 357
                P
Sbjct: 1840 TPTSP 1844



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 1843 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902

Query: 343  DIVVPR 360
                P+
Sbjct: 1903 TPTSPK 1908



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 1850 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909

Query: 343  DIVVP 357
                P
Sbjct: 1910 SPTSP 1914



 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 1815 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874

Query: 343  DIVVP 357
                P
Sbjct: 1875 SPTSP 1879



 Score = 31.2 bits (69), Expect = 0.62
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            P Y   +P Y+  +P ++  SP Y   +P ++  S  Y   + +Y   +P Y    P+
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPK 1873



 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 1794 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853

Query: 343  DIVVPR 360
                P+
Sbjct: 1854 TPTSPK 1859



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
            T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 1880 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 1939

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1940 YSPTSPGYSPTSP 1952

---

>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 160  LSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPS 339
            +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PS
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1667

Query: 340  YDIVVPR 360
            Y    PR
Sbjct: 1668 YSPSSPR 1674



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1682

Query: 343  DIVVP 357
                P
Sbjct: 1683 SPTSP 1687



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +P Y
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY 1675

Query: 343  DIVVP 357
                P
Sbjct: 1676 SPTSP 1680



 Score = 34.3 bits (77), Expect = 0.073
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSY 1710

Query: 343  D 345
            +
Sbjct: 1711 E 1711



 Score = 34.3 bits (77), Expect = 0.073
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSP--GYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P++ M +P Y+  +P ++  SP  G + V+P ++  S SY   +  Y   +PSY    P
Sbjct: 1580 PQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1638



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1644 SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1703

Query: 343  DIVVP 357
                P
Sbjct: 1704 SPTSP 1708



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +P+Y
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1696

Query: 343  DIVVP 357
                P
Sbjct: 1697 SPTSP 1701



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +P+Y
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTY 1689

Query: 343  DIVVP 357
                P
Sbjct: 1690 SPTSP 1694



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S SY    P+Y   +P Y+  +P +   SP YN  +P     S  Y   +  Y  
Sbjct: 1729 TYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP-RGFSSPQYSPTSPTYSP 1787

Query: 328  VAPSY 342
             +PSY
Sbjct: 1788 TSPSY 1792



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 193  YDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
            Y   +P Y+  +P ++  SP Y+  +P ++  S  Y  ++  Y   +P+Y+   PR
Sbjct: 1716 YSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR 1771



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +1

Query: 94   YIELGQGHELLGGRGNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAP 273
            Y      +E  GG    S   S SS      P Y   +P Y+  +P ++  SP Y+  +P
Sbjct: 1703 YSPTSPSYESGGGYSPSSPKYSPSS------PTYSPTSPSYSPTSPQYSPTSPQYSPSSP 1756

Query: 274  IHNMVSLSYDIAATRYGIVAPSYDIVVP 357
             +   S +Y+  + R G  +P Y    P
Sbjct: 1757 TYTPSSPTYNPTSPR-GFSSPQYSPTSP 1783



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 178  FVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            F  P+Y   +P Y+  +P +   SP Y+  +P +          + +Y   +P+Y
Sbjct: 1773 FSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTY 1827

---

>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 127 GGRGNQSTHISLSS-SYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYD 303
           GG   QS   S +S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY 
Sbjct: 103 GGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 162

Query: 304 IAATRYGIVAPSYDIVVP 357
             +  Y   +PSY    P
Sbjct: 163 PTSPSYSPTSPSYSPTSP 180



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 123 SPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 182

Query: 343 DIVVP 357
               P
Sbjct: 183 SPTSP 187



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 179 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 238

Query: 343 DIVVP 357
               P
Sbjct: 239 SPTSP 243



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 172 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 231

Query: 343 DIVVP 357
               P
Sbjct: 232 SPTSP 236



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 165 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 224

Query: 343 DIVVP 357
               P
Sbjct: 225 SPTSP 229



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 158 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 217

Query: 343 DIVVP 357
               P
Sbjct: 218 SPTSP 222



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 151 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 210

Query: 343 DIVVP 357
               P
Sbjct: 211 SPTSP 215



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 144 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 203

Query: 343 DIVVP 357
               P
Sbjct: 204 SPTSP 208



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 137 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 196

Query: 343 DIVVP 357
               P
Sbjct: 197 SPTSP 201



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +PSY
Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301

Query: 343 DIVVPR 360
               PR
Sbjct: 302 SPSSPR 307



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 193 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 252

Query: 343 DIVVP 357
               P
Sbjct: 253 TPTSP 257



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 186 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 245

Query: 343 DIVVP 357
               P
Sbjct: 246 SPTSP 250



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189

Query: 343 DIVVP 357
               P
Sbjct: 190 SPTSP 194



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 200 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 259

Query: 343 DIVVP 357
               P
Sbjct: 260 SPTSP 264



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P ++  SP Y+  +P ++  S SY  ++ RY   +P+Y
Sbjct: 256 SPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 315



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P ++  SP Y+  +P +   S +Y   +  Y   +PSY
Sbjct: 235 SPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 294

Query: 343 DIVVP 357
               P
Sbjct: 295 SPTSP 299



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 207 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 266

Query: 343 DIVVP 357
               P
Sbjct: 267 SPTSP 271



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
           T+   S SY    P Y   +P Y   +P ++  SP Y   +P ++  S  Y   + +Y  
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSP 373

Query: 328 VAPSYDIVVPR 360
            +P+Y    P+
Sbjct: 374 TSPTYSPTTPK 384



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P +   SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 228 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 287

Query: 343 DIVVP 357
               P
Sbjct: 288 SPTSP 292



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P +   S SY   +  Y   +P+Y
Sbjct: 214 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 273

Query: 343 DIVVP 357
               P
Sbjct: 274 TPTSP 278



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y   +P ++  S SY   +  Y   +P+Y
Sbjct: 221 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 280

Query: 343 DIVVP 357
               P
Sbjct: 281 SPTSP 285



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    PRY   +P Y   +P ++  SP Y+  +P +   S SY  ++  Y   +P Y
Sbjct: 298 SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 357

Query: 343 DIVVPR 360
               P+
Sbjct: 358 SPTSPK 363



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+   P ++  SP Y+  +P++   S  Y   +  Y   +P Y
Sbjct: 361 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 420

Query: 343 DIVVP 357
               P
Sbjct: 421 SPTSP 425



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+  +P ++  +P Y+  +P ++  S  Y   + +Y   +P+Y
Sbjct: 354 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 413

Query: 343 DIVVPR 360
               P+
Sbjct: 414 SPTSPK 419



 Score = 34.7 bits (78), Expect = 0.056
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y+  +P +   S +Y  ++  Y   +PSY
Sbjct: 270 SPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 329

Query: 343 DIVVPR 360
               P+
Sbjct: 330 SPTSPK 335



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y   +P  
Sbjct: 375 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 434

Query: 343 DIVVPR*NCVVIPGYN 390
               P       PGY+
Sbjct: 435 STYSP-----TSPGYS 445



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P +   SP Y   +P ++  S SY   + +Y   +PSY
Sbjct: 284 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y   +PSY
Sbjct: 263 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 322



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P +   SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y     +Y   +P+Y
Sbjct: 333 SPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 392

Query: 343 DIVVP 357
               P
Sbjct: 393 SPTSP 397



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P+Y   +P Y+  +P +   SP Y+  +P ++  S  Y   +  Y    P Y
Sbjct: 326 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 385

Query: 343 DIVVP 357
               P
Sbjct: 386 SPTSP 390



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P ++  SP Y   +P +   S SY  ++  Y   +P Y
Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336

Query: 343 DIVVP 357
               P
Sbjct: 337 TPTSP 341



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  +  Y   +  Y   +P Y
Sbjct: 340 SPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 399

Query: 343 DIVVPR 360
               P+
Sbjct: 400 TPTSPK 405



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S  Y    P+Y   +P Y+  +P ++  SP Y+   P ++  S +Y   +  Y   +P Y
Sbjct: 347 SPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 406

Query: 343 DIVVP 357
               P
Sbjct: 407 SPTSP 411



 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S +Y    P Y   +P Y+  +P +   SP Y+  +P +   S  Y   + +Y   +P Y
Sbjct: 312 SPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371

Query: 343 DIVVP 357
               P
Sbjct: 372 SPTSP 376



 Score = 31.2 bits (69), Expect = 0.62
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 187 PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
           P Y   +P Y+  +P ++  SP Y   +P ++  S  Y   + +Y   +P Y    P+
Sbjct: 313 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPK 370



 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y   +P +   SP Y+  +P ++  S  Y   +  Y   +P Y
Sbjct: 291 SPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 350

Query: 343 DIVVPR 360
               P+
Sbjct: 351 TPTSPK 356



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR--- 318
           T+   +  Y    P Y   +P Y   +P ++  SP Y+  +P ++  S +Y   + +   
Sbjct: 377 TYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGST 436

Query: 319 YGIVAPSYDIVVP 357
           Y   +P Y    P
Sbjct: 437 YSPTSPGYSPTSP 449

---

>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 739 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSY 798

Query: 343 DIVVP 357
               P
Sbjct: 799 SPTSP 803



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 795 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 854

Query: 343 DIVVP 357
               P
Sbjct: 855 SPTSP 859



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 788 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 847

Query: 343 DIVVP 357
               P
Sbjct: 848 SPTSP 852



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 781 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 840

Query: 343 DIVVP 357
               P
Sbjct: 841 SPTSP 845



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 760 SPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 819

Query: 343 DIVVP 357
               P
Sbjct: 820 SPTSP 824



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 753 SPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 812

Query: 343 DIVVP 357
               P
Sbjct: 813 SPTSP 817



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 802 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 861



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 767 SPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 826

Query: 343 DIVVP 357
               P
Sbjct: 827 SPTSP 831



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 136 GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
           G+   +   S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + 
Sbjct: 716 GSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 775

Query: 316 RYGIVAPSYDIVVP 357
            Y   +PSY    P
Sbjct: 776 FYSPTSPSYSPTSP 789



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PSY
Sbjct: 816 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 875



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 148 THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
           T+   S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S  Y   +  Y  
Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSP 786

Query: 328 VAPSYDIVVP 357
            +PSY    P
Sbjct: 787 TSPSYSPTSP 796



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 163 SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
           S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 809 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 868



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +PSY
Sbjct: 823  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSY 882



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +1

Query: 139 NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
           N +     S  Y+   P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  
Sbjct: 710 NANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 769

Query: 319 YGIVAPSYDIVVP 357
           Y   +P Y    P
Sbjct: 770 YSPTSPFYSPTSP 782



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY  ++  Y   +P++
Sbjct: 830  SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889

---

>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1512 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1571

Query: 343  DI 348
             +
Sbjct: 1572 SV 1573



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1505 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1564

Query: 343  DIVVP 357
                P
Sbjct: 1565 SPTSP 1569



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1498 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1557

Query: 343  DIVVP 357
                P
Sbjct: 1558 SPTSP 1562



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1491 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1550

Query: 343  DIVVP 357
                P
Sbjct: 1551 SPTSP 1555



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1484 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1543

Query: 343  DIVVP 357
                P
Sbjct: 1544 SPTSP 1548



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1477 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1536

Query: 343  DIVVP 357
                P
Sbjct: 1537 SPTSP 1541



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529

Query: 343  DIVVP 357
                P
Sbjct: 1530 SPTSP 1534



 Score = 34.3 bits (77), Expect = 0.073
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y +   S+
Sbjct: 1519 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMSSF 1578



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 136  GNQS-THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAA 312
            GN S TH+ ++ S   +  R    +P Y+  +P ++  SP Y+  +P ++  S SY   +
Sbjct: 1447 GNWSPTHLEMAYSRD-LGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1505

Query: 313  TRYGIVAPSYDIVVP 357
              Y   +PSY    P
Sbjct: 1506 PSYSPTSPSYSPTSP 1520

---

>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1703

Query: 343  DIVVP 357
                P
Sbjct: 1704 SPTSP 1708



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 343  DIVVP 357
                P
Sbjct: 1683 SPTSP 1687



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689

Query: 343  DIVVP 357
                P
Sbjct: 1690 SPTSP 1694



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1668

Query: 343  DIVVP 357
                P
Sbjct: 1669 SPTSP 1673



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654

Query: 343  DIVVP 357
                P
Sbjct: 1655 SPTSP 1659



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647

Query: 343  DIVVP 357
                P
Sbjct: 1648 SPTSP 1652



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1581 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640

Query: 343  DIVVP 357
                P
Sbjct: 1641 SPTSP 1645



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1633

Query: 343  DIVVP 357
                P
Sbjct: 1634 SPTSP 1638



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626

Query: 343  DIVVP 357
                P
Sbjct: 1627 SPTSP 1631



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1619

Query: 343  DIVVP 357
                P
Sbjct: 1620 SPTSP 1624



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 148  THISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGI 327
            T+   S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y  
Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607

Query: 328  VAPSYDIVVP 357
             +PSY    P
Sbjct: 1608 TSPSYSPTSP 1617



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696

Query: 343  DIVVPR*NCVVIPGYN 390
                P       PGY+
Sbjct: 1697 SPTSPS-YSPTSPGYS 1711



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S +Y   +  Y   +PSY
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

Query: 343  DIVVP 357
                P
Sbjct: 1676 SPTSP 1680



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661

Query: 343  DIVVP 357
                P
Sbjct: 1662 SPTSP 1666



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605

Query: 343  DIVVP 357
                P
Sbjct: 1606 SPTSP 1610



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P +   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1596



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P+Y
Sbjct: 1658 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P + + +P ++  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589



 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 205  AP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            +P + + +P  +  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1582



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHN 282
            S SY    P Y   +P Y+  +P ++  SPGY+  +P ++
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

---

>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1654 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713

Query: 343  DIVVPR 360
                P+
Sbjct: 1714 SPTSPQ 1719



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1647 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706

Query: 343  DIVVP 357
                P
Sbjct: 1707 SPTSP 1711



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699

Query: 343  DIVVP 357
                P
Sbjct: 1700 SPTSP 1704



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1633 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692

Query: 343  DIVVP 357
                P
Sbjct: 1693 SPTSP 1697



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1626 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685

Query: 343  DIVVP 357
                P
Sbjct: 1686 SPTSP 1690



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678

Query: 343  DIVVP 357
                P
Sbjct: 1679 SPTSP 1683



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671

Query: 343  DIVVP 357
                P
Sbjct: 1672 SPTSP 1676



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664

Query: 343  DIVVP 357
                P
Sbjct: 1665 SPTSP 1669



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657

Query: 343  DIVVP 357
                P
Sbjct: 1658 SPTSP 1662



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1591 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1650

Query: 343  DIVVP 357
                P
Sbjct: 1651 SPTSP 1655



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1584 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643

Query: 343  DIVVP 357
                P
Sbjct: 1644 SPTSP 1648



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1577 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636

Query: 343  DIVVP 357
                P
Sbjct: 1637 SPTSP 1641



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1570 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629

Query: 343  DIVVP 357
                P
Sbjct: 1630 SPTSP 1634



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1563 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622

Query: 343  DIVVP 357
                P
Sbjct: 1623 SPTSP 1627



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1556 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1615

Query: 343  DIVVP 357
                P
Sbjct: 1616 SPTSP 1620



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + +Y   +PSY
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSY 1727



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S +Y    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608

Query: 343  DIVVP 357
                P
Sbjct: 1609 SPTSP 1613



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY 1720



 Score = 34.7 bits (78), Expect = 0.056
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187  PRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            P +   +P Y+  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1543 PGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1599



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 196  DMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVP 357
            D+ +P ++  +P ++  SP Y+  +P ++  S SY   +  Y   +PSY    P
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1592

---

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 139  NQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATR 318
            + S +   S SY    P Y   +P Y+  +PC++  SP Y+  +P +  V+ SY   +  
Sbjct: 1674 SSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPN 1733

Query: 319  YGIVAPSYDIVVP 357
            Y   +P Y    P
Sbjct: 1734 YS-ASPQYSPASP 1745



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 163  SSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSY 342
            S SY    P Y  V P Y+  +P ++  SP Y+  +P ++   + Y   +  Y   +PSY
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768

Query: 343  D 345
            D
Sbjct: 1769 D 1769



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 136  GNQSTHISLSSSYYFVVPRYDMVAP*YNIVAPCHNIVSPGYNIVAPIHNMVSLSYDIAAT 315
            G+ S   S  ++Y      Y   +P Y+  +P ++  SP Y+  +P ++  S SY   + 
Sbjct: 1659 GSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSP 1718

Query: 316  RYGIVAPSYDIVVP 357
             Y  V PSY    P
Sbjct: 1719 NYTPVTPSYSPTSP 1732

---

>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQHCC--SLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCR 353
           CC+    GC     CC       C S  + CC+ T  G      C+      C   + C+
Sbjct: 16  CCTDPNSGC-----CCVSKTDNCCKSDTKECCTGTGEG------CK------CVNCKCCK 58

Query: 354 SQIELCCHSRIQHCCF 401
            Q   CC    + CCF
Sbjct: 59  PQANCCCGVNAKPCCF 74

---

>HSPC_ELECI (P83183) Cysteine-rich protamine|
          Length = 84

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -2

Query: 349 QCRNW-EQQCRIW*RQCRN*EKPCCVWEQQCCIREKQC---CDREQQCCIRGQPCR 194
           +CR+  +++CR   R+C    K CC    +CC R ++C   C R++  C + +P R
Sbjct: 15  RCRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPCPRKKLRCCKRRPKR 70

---

>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Granulin-1; Granulin-2; Granulin-3;
           Granulin-4; Granulin-5; Granulin-6; Granulin-7]
           (Fragment)
          Length = 591

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = +3

Query: 195 RHGCPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCRSQIELCC 374
           RH C   Q CC  S+  ++    CC      F Q   C+ Q RHCC    HC SQ   C 
Sbjct: 521 RHFCHDEQTCCRDSRGGWA----CCP-----FHQGVCCKDQ-RHCCPAGFHCESQGTRCV 570

Query: 375 HSR 383
           H +
Sbjct: 571 HKK 573

---

>AGRN_RAT (P25304) Agrin precursor|
          Length = 1959

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRH-CRYQIR 323
           C L+ H C+  +H F +    C   Q   S L H CR   R
Sbjct: 191 CQLLSHACASQEHIFKKFNGPCDPCQGSMSDLNHICRVNPR 231

---

>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 143

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 286 PCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           PCC  +  CC ++  CC +   CC +   C
Sbjct: 73  PCCPQKCSCCPKKCTCCPQPPPCCAQPTCC 102



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 280 CVWEQQCCIREKQCCDREQQCCIRGQPC 197
           C  +  CC ++  CC ++  CC +  PC
Sbjct: 68  CPLKPPCCPQKCSCCPKKCTCCPQPPPC 95



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC  +  CC  +  CC  +  CC   +PC
Sbjct: 24  KPCCPQKPPCC-PKSPCCPPKSPCC-PPKPC 52



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC   + CC ++  CC +   CC    PC
Sbjct: 18  KPCCP-PKPCCPQKPPCCPK-SPCCPPKSPC 46

---

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC   + CC+++  CC +   CC    PC
Sbjct: 19  KPCCP-PKPCCLQKSPCCPK-SPCCPPKSPC 47



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 289 KPCCVWEQQCCIREKQCCDREQQCCIRGQPC 197
           KPCC  +  CC ++  CC  +  CC++   C
Sbjct: 76  KPCCPTKCTCCPKKCTCCP-QPTCCVQPTCC 105



 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 289 KPCCVWEQQCCIREKQCCDREQQCC 215
           KPCC+ +  CC  +  CC  +  CC
Sbjct: 25  KPCCLQKSPCC-PKSPCCPPKSPCC 48

---

>VTS1_DEBHA (Q6BSL1) Protein VTS1|
          Length = 577

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 253 REKQCCDREQQCCIRGQPCRIWEQQSSNWR---IVICEWIDSLFPRGAHVLVQVQCSLQS 83
           +++Q  DR+QQ            QQ++N+    IV C WI++L PR    ++   C+   
Sbjct: 175 QQQQTIDRQQQ------------QQATNFYLDLIVFCNWIETLNPRDNITMIDYLCNNLP 222

Query: 82  LD 77
           LD
Sbjct: 223 LD 224

---

>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 153 VSGLIPSSPEELMSLSKFNVVYNRLMSPI 67
           +SG IP S ++L  LSKF+V YN L   I
Sbjct: 583 LSGSIPVSLQQLSFLSKFSVAYNNLSGVI 611

---

>AF2_GRASP (P61409) Alpha mechanotoxin (Peptide GsAF II)|
          Length = 31

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 259 CIREKQCCDREQQCCIRGQPCRIWEQQSSNW 167
           C +    CD E++CC  G  CR+W ++   W
Sbjct: 2   CQKWMWTCDEERKCC-EGLVCRLWCKKKIEW 31

---

>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)|
          Length = 213

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
 Frame = +3

Query: 222 CCSLSQHCFSRIQHCCSHTQHGF--------SQLRHCRYQIRHCCSQLRHCRSQIELC 371
           CCS   +C     +C    Q+G         SQ         HCCSQ  HC    E C
Sbjct: 44  CCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCPNNHCCSQYGHCGFGAEYC 101



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIR-------------HCCSQLR 344
           CP   HCCS   HC    ++C +  Q G      CR  I+              CCSQ  
Sbjct: 82  CPN-NHCCSQYGHCGFGAEYCGAGCQGG-----PCRADIKCGSQSGGKLCPNNLCCSQWG 135

Query: 345 HCRSQIELC 371
            C    E C
Sbjct: 136 FCGLGSEFC 144

---

>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)|
          Length = 633

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 295 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHSTSLT 351

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 352 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 380

---

>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:|
           Acrogranin; Paragranulin; Granulin-1 (Granulin G);
           Granulin-2 (Granulin F); Granulin-3 (Granulin B);
           Granulin-4 (Granulin A); Granulin-5 (Granulin C);
           Granulin-6 (Granulin D); Granul
          Length = 593

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -2

Query: 283 CCVWEQQ-CCIREKQCCDREQQCCIRGQPC 197
           CC + Q  CC   + CC    +C  RG  C
Sbjct: 543 CCPYRQGVCCADRRHCCPAGFRCAARGTKC 572



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -2

Query: 271 EQQCC-IREKQCCDREQQCCIRGQPC 197
           E  CC I E  CC   Q CC +G  C
Sbjct: 385 EWGCCPIPEAVCCSDHQHCCPQGYTC 410



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
 Frame = +3

Query: 177 LCCSQIRHGCPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQ---IRHCCSQLRH 347
           + C    H CP   HC +  + CF R      +   G  Q    +++      CC  +  
Sbjct: 90  VACGDGHHCCPRGFHCSADGRSCFQR----SGNNSVGAIQCPDSQFECPDFSTCCVMVDG 145

Query: 348 ----CRSQIELCCHSRIQHCC 398
               C      CC  R+ HCC
Sbjct: 146 SWGCCPMPQASCCEDRV-HCC 165

---

>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 262 CCIREKQCCDREQQCCIRGQPCR 194
           CC   KQC    Q+CCI G+ C+
Sbjct: 7   CCQDGKQCPCAGQECCITGKCCK 29

---

>HSP1_PTEHP (Q8WNZ9) Sperm protamine P1|
          Length = 48

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR Q R  C  + R CR +   CC  R + CC
Sbjct: 1   ARYRCCRSQSRSRCRRRRRRCRRRRRRCCRRRRRVCC 37

---

>AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fragment)|
          Length = 186

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIR-------------HCCSQLR 344
           CP   HCCS   HC    ++C +  Q G      CR  I+              CCSQ  
Sbjct: 55  CPN-NHCCSQYGHCGFGAEYCGAGCQGG-----PCRADIKCGSQAGGKLCPNNLCCSQWG 108

Query: 345 HCRSQIELC 371
           +C    E C
Sbjct: 109 YCGLGSEFC 117



 Score = 29.3 bits (64), Expect = 2.3
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
 Frame = +3

Query: 222 CCSLSQHCFSRIQHCCSHTQHGFSQL-RHCRYQI-------RHCCSQLRHCRSQIELC 371
           CCS   +C     +C    Q+G     + C  Q         HCCSQ  HC    E C
Sbjct: 17  CCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYC 74

---

>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
 Frame = +3

Query: 165  LQLLLCCSQIRHGCPLIQHCCSLS--QHCFSRIQHC--CSHTQHGFSQLRHCRYQIRHCC 332
            L +  C   + H C      CSL   Q     +QH   C    +G   +  C+  I  CC
Sbjct: 1771 LSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPV--CKQLIALCC 1828

Query: 333  SQLRHCRSQ---IELCCH-------SRIQHCCFQ 404
               +HC+     +  C +        +IQHC  Q
Sbjct: 1829 YHAKHCQENKCPVPFCLNIKHNVRQQQIQHCLQQ 1862

---

>CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 precursor|
          Length = 232

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/79 (13%), Positives = 36/79 (45%)
 Frame = -2

Query: 373 QHNSIWERQCRNWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCCIRGQPCR 194
           ++   W+     W++   +W +     ++   +WE++  +  ++    E++  +      
Sbjct: 124 KYRIFWKDDKAFWKEDNALWEKDRNLLQEDKALWEEEKALWVEERALLEEEKALWEDKTS 183

Query: 193 IWEQQSSNWRIVICEWIDS 137
           +WE++++ W      W++S
Sbjct: 184 LWEEENALWEEERAFWVES 202

---

>ZFP90_MOUSE (Q61967) Zinc finger protein 90 (Zfp-90) (Zinc finger protein NK10)|
          Length = 636

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 294 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHSTSLT 350

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 351 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 379

---

>MCSP_HUMAN (P49901) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 116

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 225 CSLSQH---CFSRIQHCCSHTQHGFSQLRHCRYQIRHCC--SQLRHCRSQIELCCHSRIQ 389
           C  ++H   C ++   CC   Q+     + C+ +   CC   Q + C+ +   CC  +  
Sbjct: 2   CDQTKHSKCCPAKGNQCCPPQQN-----QCCQSKGNQCCPPKQNQCCQPKGSQCCPPKHN 56

Query: 390 HCC 398
           HCC
Sbjct: 57  HCC 59



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 346 CRNWEQQCRIW*RQCRN*EKPCCVWE-QQCCI-REKQCCDREQQCCIRGQPC 197
           C++   QC      C   +  CC  +  QCC  +   CC  +  CCI+ + C
Sbjct: 27  CQSKGNQC------CPPKQNQCCQPKGSQCCPPKHNHCCQPKPPCCIQARCC 72

---

>HSP1_RAT (P10118) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 50

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR + R  C  + R CR +   CC  R + CC
Sbjct: 1   ARYRCCRSKSRSRCRRRRRRCRRRRRRCCRRRRRRCC 37

---

>HSP1_MOUSE (P02319) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 50

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR + R  C  + R CR +   CC  R + CC
Sbjct: 1   ARYRCCRSKSRSRCRRRRRRCRRRRRRCCRRRRRRCC 37

---

>CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 precursor|
          Length = 233

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/79 (13%), Positives = 36/79 (45%)
 Frame = -2

Query: 373 QHNSIWERQCRNWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCCIRGQPCR 194
           ++ + W+     W++   +W R     ++   +WE++  +  ++    E +  +      
Sbjct: 124 KYRTFWKEDKAFWKEDNALWERDRNLLQEDKALWEEEKALWVEERALLEGEKALWEDKTS 183

Query: 193 IWEQQSSNWRIVICEWIDS 137
           +WE++++ W      W+++
Sbjct: 184 LWEEENALWEEERAFWMEN 202

---

>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 349  QCR-NWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCC 215
            +CR N+   CR    +CR    P C   +   +R+ QCCD  +  C
Sbjct: 2353 ECRPNFTCACRK--DECRRESPPSCPPHRTLALRKTQCCDEYECAC 2396

---

>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQHCCSLSQHCFSRIQH-----CCSHTQHGFS--QLRHCRYQIRHCCSQ 338
           CC      C   + CCS S    S  Q      CCS +  G S  Q   C    + CCSQ
Sbjct: 101 CCKPYCSQCSCCKPCCSSSGRGSSCCQSSCCKPCCSSSGCGSSCCQSSCC----KPCCSQ 156

Query: 339 LRHCRSQIELCCHSRI 386
            R C   + +C   +I
Sbjct: 157 SRCC---VPVCYQCKI 169

---

>ZNF22_RAT (Q9ERU2) Zinc finger protein 22 (Kruppel-type zinc finger protein|
           Krox-25)
          Length = 237

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQH----------CCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHC 329
           C  + +    LIQH          CC     CFS+  H   H +    +  +   +   C
Sbjct: 116 CGERFKQSSNLIQHQRIHTGEKPYCCDECGRCFSQSSHLIQHQRTHTGEKPYQCEECDKC 175

Query: 330 CSQLRHCRSQIEL 368
            SQ  H R  +++
Sbjct: 176 FSQSSHLRQHMKV 188

---

>ZNF22_MOUSE (Q9ERU3) Zinc finger protein 22 (Zinc finger protein 422) (Krox-25|
           protein) (Krox-26 protein)
          Length = 237

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
 Frame = +3

Query: 180 CCSQIRHGCPLIQH----------CCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHC 329
           C  + +    LIQH          CC     CFS+  H   H +    +  +   +   C
Sbjct: 116 CGERFKQSSNLIQHQRIHTGEKPYCCDECGRCFSQSSHLIQHQRTHTGEKPYQCEECDKC 175

Query: 330 CSQLRHCRSQIEL 368
            SQ  H R  +++
Sbjct: 176 FSQSSHLRQHMKV 188

---

>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)|
          Length = 2616

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 280  CVWEQQCCIREKQCCDREQQC 218
            CVW  + CI ++Q CDR   C
Sbjct: 1401 CVWGGKRCIAKRQRCDRNVDC 1421

---

>KHSE_SYNPX (Q7U659) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 315

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 208 GQPCRIWEQQSSNWRIVICEWIDSL 134
           G  C   +  S  WR+V CEWI S+
Sbjct: 149 GGLCMTAKAASQRWRVVRCEWISSV 173

---

>FBLN1_MOUSE (Q08879) Fibulin-1 precursor (Basement-membrane protein 90) (BM-90)|
          Length = 705

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 255 IQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCRSQIELCCHSRIQ--HC 395
           ++ CC+      +Q R C        S+ + CR   E CCH++++  HC
Sbjct: 33  MEACCTDGNQMANQHRDCSLPYT---SESKECRMVQEQCCHNQLEELHC 78

---

>SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma selenoprotein P)|
          Length = 380

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 153 HITILQLLLCCSQIRHGCPLIQHCCSLSQHCFSRIQHCCSHTQH 284
           H+++ Q  LC    R GC + Q  C LS+   +    CC H +H
Sbjct: 268 HLSLAQRKLC----RRGC-INQLLCKLSKESEAAPSSCCCHCRH 306

---

>CAPG_STAAU (P39856) Protein capG|
          Length = 172

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 396 NNVVSGNDNTILSGNDNVVTGSNNAVSGSGNVVTE 292
           NNV  G ++ IL G    VT  NN V G+G+VVT+
Sbjct: 87  NNVFIGINSIILPG----VTIGNNVVVGAGSVVTK 117

---

>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)|
          Length = 636

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
 Frame = +3

Query: 129 GKRESIHSHITILQLLLCCSQIRHGCPLIQHC----------CSLSQHCFSRIQHCCSHT 278
           G+ E+ H+     Q  LC    +    L+QH           C+L   C    +H  S T
Sbjct: 298 GQHENAHTGEKPYQCSLCGKAFQRSSSLVQHQRIHTGEKPYRCNL---CGRSFRHGTSLT 354

Query: 279 QHGFSQLRHCRYQIRHCCSQLRHCRSQIE 365
           QH  +      +Q + C      C S ++
Sbjct: 355 QHEVTHSGEKPFQCKECGKAFSRCSSLVQ 383

---

>RTPT_YEAST (P17558) 40S ribosomal protein PET123, mitochondrial precursor|
          Length = 318

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTGSNNAVSGS 310
           SN    GN   +LSGN  + T  NNA+ GS
Sbjct: 239 SNFTQFGNRKLLLSGNTTLQTQINNAIMGS 268

---

>MT_STENE (P55953) Metallothionein (MT)|
          Length = 64

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 262 CCIREKQCCDREQQCCIRGQPCR 194
           CC   K+C  + ++CC  G+ C+
Sbjct: 8   CCKEGKECACKGKECCTTGECCK 30

---

>MED2_YEAST (Q12124) RNA polymerase II mediator complex subunit 2|
          Length = 431

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTGSNNAVSGSGNVVT 295
           +NN  +GN+N   SGNDN  T +N++ + + ++ T
Sbjct: 335 NNNDDNGNNNNNNSGNDNNNTTNNDSNNKNNSITT 369

---

>GRN1_CYPCA (P81013) Granulin-1|
          Length = 57

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 213 IQHCC--SLSQHCFSRIQHCCSHTQHGFSQLRHC 308
           + +CC  S+ Q C   I HCC H  H  S   HC
Sbjct: 23  VWYCCPFSMGQCCRDGI-HCCRHGYHCDSTSTHC 55

---

>NDC1_XENLA (Q6AX31) Nucleoporin NDC1 (xNDC1) (Transmembrane protein 48)|
          Length = 660

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 160 VICEWIDSLFPRGAHVLVQVQCSLQSLDEPNR 65
           V+  W  ++  +G + L+ V C+LQS DE ++
Sbjct: 115 VLASWCYAVLSKGKYQLLVVSCTLQSEDEADK 146

---

>ENPP3_HUMAN (O14638) Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP|
           3) (Phosphodiesterase I/nucleotide pyrophosphatase 3)
           (Phosphodiesterase I beta) (PD-Ibeta) (CD203c antigen)
           [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1);
           Nucleotide p
          Length = 875

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 5   KTFCGYLSSKRILYP*SYKYAIGLIKRL*TTLNLDKDMSSSGEEGINPLTYHYPPV 172
           KTF  + +    LYP S+    G+I      +NL+K+ S S +E  NP  +H  P+
Sbjct: 204 KTFPNHYTIVTGLYPESH----GIIDNNMYDVNLNKNFSLSSKEQNNPAWWHGQPM 255

---

>Y330_BUCBP (Q89AG4) UPF0176 protein bbp_330|
          Length = 312

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 204 CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHC 350
           C   ++ C    +CF+      S   + F Q   CR +  +CCS+  HC
Sbjct: 266 CDQCENLCDTYVNCFN------SRCHNLFIQCNFCRKKFHNCCSE--HC 306

---

>PLXA3_HUMAN (P51805) Plexin-A3 precursor (Plexin-4) (Semaphorin receptor SEX)|
          Length = 1871

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +1

Query: 238 NIVSPGYNIVAPIHNM------VSLSYDIAATRYGIVAPSYDIVVP 357
           ++ SPG  +   +HN+      VS +++ AA    ++ PS +++ P
Sbjct: 550 SVTSPGVQLTVTLHNVPDLSAGVSCAFEAAAENEAVLLPSGELLCP 595

---

>BARH2_DROME (Q24256) Homeobox protein B-H2 (Homeobox protein BarH2)|
          Length = 645

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTG-----SNNAVSGSGNVV 298
           SNN  + N+N   S N N+++G     +NN  SG+GN++
Sbjct: 287 SNN--NNNNNNSASANSNIISGNSSSSNNNNGSGNGNML 323

---

>HSP1_RHIHA (Q8WNZ6) Sperm protamine P1|
          Length = 48

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR + R  C  + R CR +   CC  R + CC
Sbjct: 1   ARYRCCRSRSRSRCRPRRRRCRRRRRRCCRRRRRVCC 37

---

>AGI_ORYSA (P11219) Lectin precursor (Agglutinin) [Contains: Lectin 10 kDa|
           peptide; Lectin 8 kDa peptide]
          Length = 227

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
 Frame = +3

Query: 180 CCSQIRHG-------CPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIR----- 323
           CCS  R G       C   Q CCS   +C    ++C S  Q+G      CR  I+     
Sbjct: 68  CCSSQRCGSQGGGATCSNNQ-CCSQYGYCGFGSEYCGSGCQNG-----PCRADIKCGRNA 121

Query: 324 --------HCCSQLRHCRSQIELC---CHSRIQHCC 398
                    CCSQ  +C    E C   C S    CC
Sbjct: 122 NGELCPNNMCCSQWGYCGLGSEFCGNGCQSGA--CC 155



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/65 (35%), Positives = 27/65 (41%)
 Frame = +3

Query: 177 LCCSQIRHGCPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCRS 356
           LCCSQ  + C L +  C     C S    CCS  + G SQ          CCSQ  +C  
Sbjct: 44  LCCSQFGY-CGLGRDYCGTG--CQSGA--CCSSQRCG-SQGGGATCSNNQCCSQYGYCGF 97

Query: 357 QIELC 371
             E C
Sbjct: 98  GSEYC 102

---

>LCE1C_HUMAN (Q5T751) Late cornified envelope protein 1C (Late envelope protein|
           3)
          Length = 118

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 17/62 (27%)
 Frame = +3

Query: 204 CPLIQHCCSLSQ----------HCFSRIQHCCSH------TQHGFSQLRHC-RYQIRHCC 332
           CP +  CCS+S            C S    CCS         H   +  HC R Q   CC
Sbjct: 37  CPPVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCC 96

Query: 333 SQ 338
           SQ
Sbjct: 97  SQ 98

---

>LCE1B_HUMAN (Q5T7P3) Late cornified envelope protein 1B (Late envelope protein|
           2) (Small proline-rich-like epidermal differentiation
           complex protein 2A)
          Length = 118

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 17/62 (27%)
 Frame = +3

Query: 204 CPLIQHCCSLSQ----------HCFSRIQHCCSH------TQHGFSQLRHC-RYQIRHCC 332
           CP +  CCS+S            C S    CCS         H   +  HC R Q   CC
Sbjct: 37  CPPVSSCCSVSSGGCCGSSSGGSCGSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCC 96

Query: 333 SQ 338
           SQ
Sbjct: 97  SQ 98

---

>CCD70_MOUSE (Q9D9B0) Coiled-coil domain-containing protein 70 precursor|
          Length = 223

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/88 (14%), Positives = 38/88 (43%)
 Frame = -2

Query: 373 QHNSIWERQCRNWEQQCRIW*RQCRN*EKPCCVWEQQCCIREKQCCDREQQCCIRGQPCR 194
           ++ + W+     W +   +W R     ++   +WE++  +  ++     ++  +      
Sbjct: 113 KYRTFWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAEEKALWEDKKS 172

Query: 193 IWEQQSSNWRIVICEWIDSLFPRGAHVL 110
           +WE++++ W      W++     G H+L
Sbjct: 173 LWEEENALWEEEKALWVEG---GGFHLL 197

---

>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived|
           growth factor) (PCDGF) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 589

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 20/94 (21%)
 Frame = +3

Query: 177 LCCSQIRHGCP-----LIQHCCSLSQHCFSRIQH---------------CCSHTQHGFSQ 296
           +CCS  +H CP     L Q  C       + ++                C  HT     Q
Sbjct: 393 VCCSDNQHCCPQGFTCLAQGYCQKGDTMVAGLEKIPARQTTPLQIGDIGCDQHTSCPVGQ 452

Query: 297 LRHCRYQIRHCCSQLRHCRSQIELCCHSRIQHCC 398
                 +    C QL H      +CC  R QHCC
Sbjct: 453 TCCPSLKGSWACCQLPHA-----VCCEDR-QHCC 480

---

>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC 3.4.21.-)|
          Length = 1905

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 300 RHCRYQIRHCCSQLRHCRSQIELCCHSRIQ 389
           ++C Y    CCS++ + +  ++LCC + I+
Sbjct: 591 KYCNYTTAKCCSEVSNVKG-LQLCCPASIK 619

---

>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)|
          Length = 623

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTGSNNAVSGSGN 304
           +NN  S N N   S N+N   GSNN+ +GS N
Sbjct: 281 NNNTSSSNTNNS-SNNNNNSGGSNNSNAGSNN 311

---

>HSP1_TRAJO (Q8MJS8) Sperm protamine P1|
          Length = 50

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHS--RIQHCC 398
           ++ R CR Q R  CC   R CR +    C +  R   CC
Sbjct: 1   ARYRRCRSQSRSRCCRPRRRCRRRRRQSCRARRRATRCC 39

---

>HSP1_RABIT (P10119) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 49

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 300 RHCRYQIR-HCCSQLRHCRSQIELCC-HSRIQHCC 398
           R CR Q R  C  + R CR +   CC   R++ CC
Sbjct: 4   RCCRSQSRSRCRRRRRRCRRRRRRCCQRRRVRKCC 38

---

>HSP1_PONPY (P35310) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 50

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 310 RQCRN*EKP-CCVWEQQCCIREKQCCD---REQQCCIR 209
           R CR+  +  CC   Q+C  R ++CC    R  +CC R
Sbjct: 4   RCCRSQSQSRCCRRRQRCHRRRRRCCQTRRRAMRCCRR 41

---

>HSP1_NATST (Q8WNZ3) Sperm protamine P1|
          Length = 49

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR Q R  C  + R CR++   CC  R +  C
Sbjct: 1   ARYRCCRSQSRSRCRPRRRRCRTRRRRCCRRRRRRVC 37

---

>HSP1_NATMI (Q8WNZ4) Sperm protamine P1|
          Length = 49

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 291 SQLRHCRYQIR-HCCSQLRHCRSQIELCCHSRIQHCC 398
           ++ R CR Q R  C  + R CR++   CC  R +  C
Sbjct: 1   ARYRCCRSQSRSRCRRRRRRCRTRRRRCCRRRRRRVC 37

---

>HSP1_MYODA (Q8WNY8) Sperm protamine P1|
          Length = 46

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 283 CCVWEQQCCIREKQCCDREQQCCIRGQPCRIWEQQSSNWR 164
           CC    +C  R ++C  R ++CC R +  R+  ++ S  R
Sbjct: 5   CCRSRSRCRRRRRRCYRRRRRCCRRRRRRRVCCRRYSRCR 44

---

>ZDHC9_PONPY (Q5R5J8) Palmitoyltransferase ZDHHC9 (EC 2.3.1.-) (Zinc finger DHHC|
           domain-containing protein 9) (DHHC-9) (DHHC9)
          Length = 364

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 123 PRGKRESIHSHITILQLLLCCSQIRHGCPLIQHCCSLSQHCFSRIQHCC 269
           PR K   I++ I  L+    C   R   P   HC S+  +C  R  H C
Sbjct: 124 PRIKNSQINNQIVKLKYCYTCKIFRP--PRASHC-SICDNCVERFDHHC 169

---

>PNT2_DROME (P51023) ETS-like protein pointed, isoform P2 (D-ETS-2)|
          Length = 718

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTGSNNAVSGSGN 304
           +NN  S N N   S N+N   GSNN+ +GS N
Sbjct: 376 NNNTSSSNTNNS-SNNNNNSGGSNNSNAGSNN 406

---

>LCE1D_HUMAN (Q5T752) Late cornified envelope protein 1D (Late envelope protein|
           4)
          Length = 114

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
 Frame = +3

Query: 204 CPLIQHCCSLSQ----------HCFSRIQHCCSHTQHGFSQLRHCRY-------QIRHCC 332
           CP +  CCS+S            C S    CCS    G     H R+       Q   CC
Sbjct: 33  CPPVSSCCSVSSGGCCGSSSGGGCGSNSGGCCSSGGGGCCLSHHRRHRSHRRRPQSSDCC 92

Query: 333 SQ 338
           SQ
Sbjct: 93  SQ 94

---

>KHSE_PROMP (Q7V289) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 315

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 208 GQPCRIWEQQSSNWRIVICEWIDSL 134
           G  C      S  WRI+ C+W DS+
Sbjct: 149 GGLCLTARSSSQRWRIIRCDWHDSI 173

---

>HRH1_CAVPO (P31389) Histamine H1 receptor|
          Length = 488

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 327 CCSQLRHCRSQIELCCHSRIQH 392
           CC  L H  SQ+EL   SR  H
Sbjct: 321 CCEALNHMHSQLELSGQSRATH 342

---

>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1|
          Length = 805

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 399 SNNVVSGNDNTILSGNDNVVTGSNNAVSGSG 307
           +N   SGN N  ++ N+N     N AV+G+G
Sbjct: 501 ANVNTSGNGNGAINNNNNASHNGNGAVNGNG 531

---

>BORIS_HUMAN (Q8NI51) Transcriptional repressor CTCFL (CCCTC-binding factor)|
           (Brother of the regulator of imprinted sites) (Zinc
           finger protein CTCF-T) (CTCF paralog)
          Length = 663

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 216 QHCCSLSQHCFSRIQHCCSHTQHGFSQLRHCRYQIRHCCSQLRHCRSQI 362
           ++C ++    ++ IQH  +H      + +HC Y     C Q RH  + I
Sbjct: 461 RYCSAVFHERYALIQHQKTHKNEKRFKCKHCSY----ACKQERHMTAHI 505

---

>EI2B1_ARCFU (O29877) Putative translation initiation factor eIF-2B subunit 1|
           (eIF-2B GDP-GTP exchange factor)
          Length = 339

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 187 PRYDMVAP*YNIVAPCH-NIVSPGYNIVAPIHNMVSLSYDIAATRYGIVAPSYDIVVPR 360
           PR +++      +AP +  + +P ++   P+ N+ +L      T YG++ P Y++ VP+
Sbjct: 283 PREELIFCGKRQIAPLNVKVYNPAFD-PTPLENVTAL-----ITEYGVIYPPYEVNVPK 335

---

>ANTA_HAEOF (P15358) Antistasin precursor (ATS) (Blood coagulation factor|
           Xa/proclotting enzyme inhibitor)
          Length = 136

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
 Frame = +3

Query: 201 GCPLIQHCCSLSQHCFSRIQHCCSHTQHGFSQLRH------CRYQ-------IRHC---- 329
           GCP    C  ++  C      C  H  HGF + R+      CR +       I  C    
Sbjct: 29  GCPEGSACNIITDRCTCSGVRCRMHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGM 88

Query: 330 -CSQLRH-CRSQIELCC 374
            CS+L + C  +I++ C
Sbjct: 89  MCSRLTNKCDCKIDINC 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,307,945
Number of Sequences: 219361
Number of extensions: 1125159
Number of successful extensions: 4324
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4128
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---