>HSP2_MURBR (P83212) Sperm protamine P2|
          Length = 58

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 150
           R +RRG+ R  KR  +G++RG     G++G +++   G++  R+
Sbjct: 2   RRRRRGKGRGKKRKGKGKKRGKGRRRGSKGRKKKKGKGKKRKRR 45

>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 17  SYEIFEPSPRKKEKTAC*NHHRHRLHAHPIVASSTSIYTKHTSIPFG 157
           S+  F+P  R        +HH H LH HP+   +T+ Y  +TS P G
Sbjct: 355 SHSFFQPKKRSNMGNEYNSHHHHSLH-HPL--HNTTSYFSNTSRPSG 398

>HSP1_CHRPI (Q7LZB2) Sperm protamine P1-type (Protamine I-1)|
          Length = 58

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 150
           R++ R   R  +R  +G RRG R      G RRR + GRE +R+
Sbjct: 7   RSRSRSRRRRRRRGGRGGRRGRR--RRRHGQRRRGRRGRERTRR 48

>HSP1_PSECU (P42145) Sperm protamine P1|
          Length = 68

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 153
           R +RR   RS +R  +GRRRG  +  G RG RRR  + R   R
Sbjct: 26  RGRRRRYRRSRRRRRRGRRRGNCL--GRRGYRRRRYSRRRRRR 66

>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 314 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 153
           G  S D++ E R++R+ + R  +R S       R +   +GGRR     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRRPRSESRSWSR 53

>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 314 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 153
           G  S D++ E R++R+ + R  +R S       R +   +GGRR     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRRPRSDSRSWSR 53

>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -1

Query: 399 GDVALGFDQKPLRGAREEMCQEEAKRAERDGEHGQRLGVKSAKKRRGE 256
           GDV L  D+  +RGA  E+   EA      G +G RL   SA+++R E
Sbjct: 90  GDVNLKIDRYDVRGALCELAPHEAP----PGGYGNRLEYLSAEEQRAE 133

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -2

Query: 308 ESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 150
           +  D D E    RR  ERS +RD +  RR  R     R  R R K  R+ SR+
Sbjct: 220 DERDRDRERERDRR--ERSRERDKERERRRSRSRERRRRSRSREKEERKRSRE 270

>RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 314 GMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR 153
           G  S D++ E R++R+ + R  +R S       R +   +GGR+     R  SR
Sbjct: 2   GRRSSDTEEESRSKRKKKHR--RRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSR 53

>KCTD2_MOUSE (Q8CEZ0) Potassium channel tetramerisation domain-containing|
           protein 2
          Length = 266

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -2

Query: 320 LKGMESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSR--KE 147
           L+G    D+ +     R    R+    + GRRRG  + P  RG      T + L R  K 
Sbjct: 36  LRGRHPADTAASPPPPRTAGARARTSGADGRRRGRPLGPAQRGRYLLRDTRQTLGREPKS 95

Query: 146 WTCVLC 129
           + C LC
Sbjct: 96  FLCRLC 101

>AA2DA_BRARE (Q8JG70) Alpha-2Da adrenergic receptor (Alpha-2Da adrenoceptor)|
           (Alpha-2Da adrenoreceptor) (Alpha(2Da)AR)
          Length = 408

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = -2

Query: 308 ESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRV-W-----PGARGGRRRNKTG-RELSRK 150
           ES  SDS  R  R  + R  + + +G +R CRV W     PG+R  +  +K+   ++  K
Sbjct: 268 ESAASDSRARGSRFSKRRRVEGERRGPQRSCRVSWAAHQEPGSRQQQLASKSKVAQMREK 327

Query: 149 EWTCVL 132
            +T VL
Sbjct: 328 RFTFVL 333

>HSP1_PLAMS (O18746) Sperm protamine P1|
          Length = 61

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQ---GRRRGCRVWPGARGGRRR 180
           R  RR   R S+R S+   GRRRGC     +R GRRR
Sbjct: 24  RYNRRRTYRRSRRHSRRRRGRRRGCSRRRYSRRGRRR 60

>HSP1_OCTVU (P83214) Sperm protamine P1 (Po1) [Contains: Sperm protamine P2|
           (Po2) (Main protamine)]
          Length = 56

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNK 174
           R +RRG  R  +R   GRRRG R     RGGRRR +
Sbjct: 25  RGRRRGRRRGRRR---GRRRGRRR-RRRRGGRRRRR 56



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -2

Query: 272 RRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGR 165
           RR   R   R  +GRRRG R   G R GRRR +  R
Sbjct: 13  RRRRRRRRSRGRRGRRRGRR--RGRRRGRRRGRRRR 46



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNK 174
           R +RR   R  +   +GRRRG R   G R GRRR +
Sbjct: 14  RRRRRRRSRGRRGRRRGRRRGRR--RGRRRGRRRRR 47

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 299 DSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 150
           D D +   +RR  ERS +RD +  RR  R     R  R R+K  R  SR+
Sbjct: 232 DRDRDRERERR--ERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRE 279

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 384 GFDQKPLRGAREEMCQEEAKRAERDG--EHGQRLGVKSAKKRRGEV*QARQPRKKTGM 217
           G D      +  E   E     ER    +H +R  VK +KKRR E   + +PR K  M
Sbjct: 197 GSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAM 254

>IWS1_EMENI (Q5BEG5) Transcription factor iws1|
          Length = 429

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGAR--------GGRRRNKTGRELSRKEWT 141
           + +R  EE +SKR  +GRRR  R +            GG+RR     EL   E T
Sbjct: 91  KRKRTEEEGTSKRKKEGRRRKSRRYAEEEEGGSDREAGGKRRKSKKAELEEDEET 145

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 299 DSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRK 150
           D D +   +RR  ERS +RD +  RR  R     R  R R+K  R  SR+
Sbjct: 232 DRDRDRERERR--ERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 279

>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 351 EEMCQEEAKRAE-RDGEHGQRLGVKSAKKRRGEV*QARQPRKK 226
           E   + E +R   R   H +R  V+ AKKRR E+  + +PR+K
Sbjct: 209 ESSSESEVERETIRRRRHKRRPKVRHAKKRRKEMSSSEEPRRK 251

>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)|
           (EBNA-1)
          Length = 641

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 275 QRRGEERSSKRDSQGRRRGCRVWPGARGGRR---RNKTGRELSRKEWTCVLCK 126
           QRRG +   +   +GR RG    PGA GG     R++ G    +K  +C+ CK
Sbjct: 32  QRRGGDNHGRGRGRGRGRGGGR-PGAPGGSGSGPRHRDGVRRPQKRPSCIGCK 83

>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)|
          Length = 2214

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 256  GLASETAKEEDGDAVCGRERGVVGEETKPVESLAER 149
            GLAS TA      A+CG+ RG     +KP+E +  R
Sbjct: 1222 GLASPTAITPVASAICGKTRGTT-PVSKPLEDIEAR 1256

>NUM1_YEAST (Q00402) Nuclear migration protein NUM1|
          Length = 2748

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 17   SYEIFEPSPRKKEKTAC*NHHRHRLHAHPIVASSTSIYTKHTS 145
            +YE  E  P+ +E++   NHH+H      + ++STS  T H+S
Sbjct: 2488 AYEDSESHPQIEEQSHRTNHHKHHKRQQSLNSNSTS-KTTHSS 2529

>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)|
          Length = 623

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 71  NHHRHRLHAHPIVASSTSIYTKHT 142
           +HH H  H H  +A  T +++ HT
Sbjct: 78  HHHHHHSHPHHQLAQQTGLHSHHT 101

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 305 SMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKT 171
           S  S S   A R    RSS R S   RRG   +   R  R R+++
Sbjct: 362 SSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRS 406

>DDX54_HUMAN (Q8TDD1) ATP-dependent RNA helicase DDX54 (EC 3.6.1.-) (DEAD box|
           protein 54) (ATP-dependent RNA helicase DP97)
          Length = 881

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 311 MESMDSDSE*RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRR 180
           ++  DSD E  + RRG ER   +  +G+       PG   GR R
Sbjct: 777 IDDRDSDEEGASDRRGPERRGGKRDRGQGASRPHAPGTPAGRVR 820

>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 59  TAC*NHHRHRLHAHPIVASSTSIYTKHTSIPFG*ALYRFCFFSYHPSLP 205
           TA   +H  R  + P V+ +TS+ T H  +  G    +  F    PS+P
Sbjct: 130 TASQTNHCPRASSQPTVSGNTSLTTNHQYVSSGYPSLQNSFIKSGPSVP 178

>MYLK2_RAT (P20689) Myosin light chain kinase 2, skeletal/cardiac muscle (EC|
           2.7.11.18) (MLCK2)
          Length = 609

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 366 LRGAREEMCQEEAKRAERDGEHGQRLGVKSAKKRRGEV*QA 244
           L   +EE    +A++A+  G+  QR+G ++    R EV QA
Sbjct: 216 LADGKEEAEAGQAEQAKVQGDTSQRIGFQAVPSERAEVGQA 256

>HSP1_LAGHI (Q9GLQ2) Sperm protamine P1|
          Length = 64

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 281 RAQRRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRELSRKEWT 141
           R QRR   R   R  + RRR  R    +R GRRR  + R  SR+ ++
Sbjct: 15  RRQRRRRSRYRSRRRRYRRRQRR----SRRGRRRGYSRRRYSRRRYS 57

>SEN54_NEUCR (Q7SC91) Probable tRNA-splicing endonuclease subunit sen-54|
           (tRNA-intron endonuclease sen-54)
          Length = 566

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 272 RRGEERSSKRDSQGRRRGCRVWPGARGGRRRNKTGRE 162
           RRG     K+      RG R   G RGG R  + GR+
Sbjct: 518 RRGGGGGGKKSGNNNGRGSRGRGGGRGGGRGGRGGRD 554


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,940,310
Number of Sequences: 219361
Number of extensions: 853056
Number of successful extensions: 2824
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)