ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet09f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Trit... 182 2e-43
2gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine de... 155 4e-35
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
4dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.11
5dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 g... 44 0.11
6dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
7dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
8dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
9dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.11
10emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.42
11emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine de... 42 0.42
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
13gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarbo... 42 0.42
14dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
15dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
16dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
17dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
18dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.42
19emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.42
20emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 42 0.42
21emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, ... 40 1.7
22gb|BC088348.1| Rattus norvegicus cDNA clone IMAGE:7368370 38 6.6
23gb|AC166050.3| Mus musculus BAC clone RP24-138A17 from chromosom... 38 6.6
24gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome... 38 6.6
25gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, com... 38 6.6
26emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in l... 38 6.6
27gb|AC130303.8| Homo sapiens chromosome 11, clone RP4-539G11, com... 38 6.6
28emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 i... 38 6.6
29emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-5... 38 6.6
30emb|BX322533.5| Mouse DNA sequence from clone RP23-252N4 on chro... 38 6.6
31gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, com... 38 6.6 
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for
            S-adenosylmethionine decarboxylase
          Length = 1893

 Score =  182 bits (92), Expect = 2e-43
 Identities = 125/134 (93%), Gaps = 4/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcagacgcagcaaaccacctagagctaatagtttattcagagtagcaatagcctggccg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 ggcagacgcagcaaaccacctagagctaatagtttattcagagtagcaatagcctggccg 1776

                                                                        
Query: 61   gctgcttcacagtaaccaaaacgacaaacg---gaagtcagaacgaattccacagacgga 117
            ||||||||||||||||| |||||||  |||     |||||||||||||| ||||||||||
Sbjct: 1775 gctgcttcacagtaacc-aaacgacgcacgacaacagtcagaacgaattacacagacgga 1717

                          
Query: 118  acagcgacagcaaa 131
            ||||||||||||||
Sbjct: 1716 acagcgacagcaaa 1703
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>gb|AF117660.1|AF117660 Triticum aestivum S-adenosylmethionine decarboxylase precursor, mRNA,
            complete cds
          Length = 1386

 Score =  155 bits (78), Expect = 4e-35
 Identities = 111/118 (94%), Gaps = 3/118 (2%)
 Strand = Plus / Minus

                                                                        
Query: 15   accacctagagctaatagtttattcagagtagcaatagcctggccggctgcttcacagta 74
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1378 accacctagagctaatagtttattcagag-agcaatagcctggccggctgcttcacagta 1320

                                                                      
Query: 75   accaaaacgacaaacgga-agtcagaacgaattccacagacggaacagcgacagcaaa 131
            ||| ||||||||||| || ||||||||| ||||||||||| |||| ||||||||||||
Sbjct: 1319 acc-aaacgacaaactgacagtcagaacaaattccacagatggaatagcgacagcaaa 1263
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 1        ggcagacgcagcaaaccacctagagc 26
                |||||||||||||||||| |||||||
Sbjct: 15331176 ggcagacgcagcaaaccatctagagc 15331201
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>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0418B08
          Length = 165909

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1      ggcagacgcagcaaaccacctagagc 26
              |||||||||||||||||| |||||||
Sbjct: 110365 ggcagacgcagcaaaccatctagagc 110390
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>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1  gene for
            S-adenosylmethionine decarboxylase, complete cds
          Length = 2952

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ggcagacgcagcaaaccacctagagc 26
            |||||||||||||||||| |||||||
Sbjct: 2816 ggcagacgcagcaaaccatctagagc 2791
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>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full
            insert sequence
          Length = 2047

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ggcagacgcagcaaaccacctagagc 26
            |||||||||||||||||| |||||||
Sbjct: 1916 ggcagacgcagcaaaccatctagagc 1891
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>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full
            insert sequence
          Length = 2002

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ggcagacgcagcaaaccacctagagc 26
            |||||||||||||||||| |||||||
Sbjct: 1917 ggcagacgcagcaaaccatctagagc 1892
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>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full
            insert sequence
          Length = 2546

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ggcagacgcagcaaaccacctagagc 26
            |||||||||||||||||| |||||||
Sbjct: 2442 ggcagacgcagcaaaccatctagagc 2417
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>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full
            insert sequence
          Length = 2034

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1    ggcagacgcagcaaaccacctagagc 26
            |||||||||||||||||| |||||||
Sbjct: 1916 ggcagacgcagcaaaccatctagagc 1891
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    aatagcctggccggctgcttcacag 72
             ||||||||||| |||||||||||||
Sbjct: 13782 aatagcctggctggctgcttcacag 13758



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 1     ggcagacgcagcaaaccacctagagct 27
             ||||||||||||  |||||||||||||
Sbjct: 13882 ggcagacgcagctgaccacctagagct 13856
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>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase
          Length = 2036

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1841 aatagcctggctggctgcttcacag 1817



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1941 ggcagacgcagctgaccacctagagct 1915
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 48       aatagcctggccggctgcttcacag 72
                ||||||||||| |||||||||||||
Sbjct: 24893197 aatagcctggctggctgcttcacag 24893173



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 1        ggcagacgcagcaaaccacctagagct 27
                ||||||||||||  |||||||||||||
Sbjct: 24893297 ggcagacgcagctgaccacctagagct 24893271
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>gb|AF067194.1|AF067194 Oryza sativa S-adenosylmethionine decarboxylase mRNA, complete cds
          Length = 1560

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1392 aatagcctggctggctgcttcacag 1368



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1492 ggcagacgcagctgaccacctagagct 1466
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>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full
            insert sequence
          Length = 2063

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1985 ggcagacgcagctgaccacctagagct 1959
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>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full
            insert sequence
          Length = 2059

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1985 ggcagacgcagctgaccacctagagct 1959
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>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full
            insert sequence
          Length = 2711

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1985 ggcagacgcagctgaccacctagagct 1959
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>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full
            insert sequence
          Length = 2063

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1885 aatagcctggctggctgcttcacag 1861



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1985 ggcagacgcagctgaccacctagagct 1959
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>dbj|AK062001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D05, full
            insert sequence
          Length = 1217

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 48   aatagcctggccggctgcttcacag 72
            ||||||||||| |||||||||||||
Sbjct: 1043 aatagcctggctggctgcttcacag 1019



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1    ggcagacgcagcaaaccacctagagct 27
            ||||||||||||  |||||||||||||
Sbjct: 1143 ggcagacgcagctgaccacctagagct 1117
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    aatagcctggccggctgcttcacag 72
             ||||||||||| |||||||||||||
Sbjct: 13810 aatagcctggctggctgcttcacag 13786



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 1     ggcagacgcagcaaaccacctagagct 27
             ||||||||||||  |||||||||||||
Sbjct: 13910 ggcagacgcagctgaccacctagagct 13884
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 48     aatagcctggccggctgcttcacag 72
              ||||||||||| |||||||||||||
Sbjct: 154913 aatagcctggctggctgcttcacag 154889



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 1      ggcagacgcagcaaaccacctagagct 27
              ||||||||||||  |||||||||||||
Sbjct: 155013 ggcagacgcagctgaccacctagagct 154987
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>emb|AJ698342.1| Megathura crenulata KLH2 gene for hemocyanin 2, exons 1-17
          Length = 24990

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tgcttcacagtaaccaaaac 82
             ||||||||||||||||||||
Sbjct: 19045 tgcttcacagtaaccaaaac 19064
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>gb|BC088348.1| Rattus norvegicus cDNA clone IMAGE:7368370
          Length = 1901

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 67  tcacagtaaccaaaacgac 85
           |||||||||||||||||||
Sbjct: 364 tcacagtaaccaaaacgac 346
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>gb|AC166050.3| Mus musculus BAC clone RP24-138A17 from chromosome 9, complete
            sequence
          Length = 142457

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gcagcaaaccacctagagc 26
            |||||||||||||||||||
Sbjct: 5462 gcagcaaaccacctagagc 5480
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>gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome 9, complete sequence
          Length = 235852

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     gcagcaaaccacctagagc 26
             |||||||||||||||||||
Sbjct: 31027 gcagcaaaccacctagagc 31009
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>gb|AC120875.12| Mus musculus chromosome 1, clone RP23-317M5, complete sequence
          Length = 195159

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aacgacaaacggaagtcag 98
              |||||||||||||||||||
Sbjct: 164904 aacgacaaacggaagtcag 164886
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>emb|BX571822.6| Zebrafish DNA sequence from clone DKEY-5M24 in linkage group 25, complete
              sequence
          Length = 163788

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 115    ggaacagcgacagcaaaaa 133
              |||||||||||||||||||
Sbjct: 139011 ggaacagcgacagcaaaaa 139029
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>gb|AC130303.8| Homo sapiens chromosome 11, clone RP4-539G11, complete sequence
          Length = 171366

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    tttattcagagtagcaata 51
             |||||||||||||||||||
Sbjct: 65085 tttattcagagtagcaata 65103
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>emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 in linkage group 25,
              complete sequence
          Length = 159178

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 115    ggaacagcgacagcaaaaa 133
              |||||||||||||||||||
Sbjct: 101741 ggaacagcgacagcaaaaa 101723
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>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176343

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 117   aacagcgacagcaaaaatt 135
             |||||||||||||||||||
Sbjct: 15290 aacagcgacagcaaaaatt 15308
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>emb|BX322533.5| Mouse DNA sequence from clone RP23-252N4 on chromosome X, complete
             sequence
          Length = 105412

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    taatagtttattcagagta 45
             |||||||||||||||||||
Sbjct: 64990 taatagtttattcagagta 64972
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>gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, complete sequence
          Length = 193324

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aacgacaaacggaagtcag 98
             |||||||||||||||||||
Sbjct: 24092 aacgacaaacggaagtcag 24074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,192,280
Number of Sequences: 3902068
Number of extensions: 1192280
Number of successful extensions: 110127
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110010
Number of HSP's gapped (non-prelim): 115
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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