ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet09d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TENS1_HUMAN (Q9HBL0) Tensin-1 32 0.48
2AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4) 31 0.63
3TENS1_BOVIN (Q9GLM4) Tensin-1 30 1.1
4GR39B_DROME (P58960) Putative gustatory receptor 39b 28 4.1
5SP3AE_BACSU (P49782) Stage III sporulation protein AE 28 7.0
6CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c) 27 9.1

>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 98  TRSPASGRLSAFSQSTQSESVPKEPPKGLP 9
           ++SPAS  L AF  +T S   P++PP  LP
Sbjct: 811 SKSPASSSLPAFLPTTHSPPGPQQPPASLP 840



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>AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 366

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 128 SILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 253
           SILT  I RSC  K   ++   R   ++ LL+    FG ++E
Sbjct: 217 SILTDAIKRSCQHKAEVVEEDERESGMRALLNLGHTFGHAIE 258



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>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 95  RSPASGRLSAFSQSTQSESVPKEPPKGLP 9
           +SPA+   S+F  +TQS   P++PP  LP
Sbjct: 815 KSPATSSSSSFLPTTQSSVGPQQPPASLP 843



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>GR39B_DROME (P58960) Putative gustatory receptor 39b|
          Length = 369

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 329 LGSSHPLKKA**LTGLAPWHRKCLRAQVIHRSDETLKAAFSSVSSGT---FCQSGKVF 165
           L S HP  K   L GL PW   C +++ + +    +    ++V  G    F QS ++F
Sbjct: 2   LYSFHPYLKYFALLGLVPWSESCAQSKFVQKVYSAILIILNAVHFGISIYFPQSAELF 59



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>SP3AE_BACSU (P49782) Stage III sporulation protein AE|
          Length = 405

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 270 VPWS*TSELLRFLQRMAASKPTSWLSSLDHFLFH*VIA 383
           +P S    L+ F+    +  P  WL +L  +LFH V+A
Sbjct: 69  LPESQKGSLMEFINGDKSFSPQEWLKALFSYLFHEVLA 106



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>CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c)|
          Length = 779

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 258 QGSSDSPKRRDLESSFFK-CQ*RDV--LSIGEGFW*QDLEISEVRMLT*VTRNPVKNT 94
           QG   S +R    S   + C+ RD     +G+G   +DL++SE  M   V  +P+ NT
Sbjct: 659 QGKKFSKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNT 716


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,358,380
Number of Sequences: 219361
Number of extensions: 991242
Number of successful extensions: 2476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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