>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial|
           ribosomal protein 51)
          Length = 360

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 60  SGFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 209
           SGF++    R   +  +  TSK   KQ +  + ++A   P   KW++ HH
Sbjct: 124 SGFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173

>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)|
          Length = 416

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = -1

Query: 249 LRGHSSSLCVP-----GPGGGGES 193
           LRGH+S  CVP      PGGGG++
Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338

>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 292 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 203
           CL +TNY  + S T++  R LQL++   + WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359

>NU4M_MACRO (P92668) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 292 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 203
           CL +TNY  + S T++  R LQL++     WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMCTWW 359

>RP54_RALEU (P28615) RNA polymerase sigma-54 factor|
          Length = 493

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 119 EQTCTQTNTRLGFKASYELAIH*QMDSPPPPGPGTHNELEC 241
           E+ CT+    L F+     AI   + S  PPG G  N  EC
Sbjct: 177 EEICTELPEELEFEIEEVHAILTLLQSFDPPGVGARNAAEC 217

>YAFY_ECOLI (P77365) Putative HTH-type transcriptional regulator yafY|
          Length = 285

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 332 RTVRQDCLERVMYLFVEYKLRVVNY 258
           RT+R+D  ER+MYL +EY+    +Y
Sbjct: 42  RTLRRDFRERLMYLDLEYQSGYCHY 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,353,614
Number of Sequences: 219361
Number of extensions: 979788
Number of successful extensions: 3022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)