>ENV_MLVMO (P03385) Env polyprotein precursor [Contains: Surface protein (SU)|
           (GP70); Transmembrane protein (TM) (p15E); R protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 80  VWTSSITYKLWVIWLAHISHTCMLLKYAKSHSHSEDKSSFHAPP 211
           VW +S  + LW  W       CML  +  S+   E +S F +PP
Sbjct: 58  VWATSGNHPLWTWWPDLTPDLCMLAHHGPSYWGLEYQSPFSSPP 101

>SAK1_SCHPO (P48383) Protein sak1|
          Length = 766

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 263 RRSFPSIKSRKISSTCYYIVMYGSDERSGSDAISRVRADADRP-TDISCSTF 415
           R  FPSIK+R++    +    Y   +  G D+  R+R  +D   + +SCS+F
Sbjct: 148 RLLFPSIKTRRLGMRGHSKYHYCGIKLRGQDSFRRLRTFSDSSLSPVSCSSF 199

>ENV_MLVHO (P21436) Env polyprotein precursor [Contains: Coat protein GP76;|
           Spike protein p15E]
          Length = 666

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 80  VWTSSITYKLWVIWLAHISHTCMLLKYAKSHSHSEDKSSFHAPP 211
           VW +S ++ LW  W       CML + AK      D   +  PP
Sbjct: 55  VWATSGSHPLWTWWPTLTPDLCMLAQLAKPSWGLSDYPPYSKPP 98

>SYNPO_HUMAN (Q8N3V7) Synaptopodin|
          Length = 929

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 435 PAPVPSPNVEQEMSVGRSASARTREIASLPLRSSE 331
           P+P P P V Q+ ++GRS S   +++     RS +
Sbjct: 121 PSPGPGPRVAQKPALGRSTSLTEKDLKEAKARSQQ 155

>PHYB_TOBAC (P29130) Phytochrome B|
          Length = 1132

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
 Frame = +2

Query: 95  ITYKLWVIWLAHISHTCMLLKYAKSHSHSEDK---------SSFHAPPSIAESRS-PYQ- 241
           IT K ++ W    SHT   +K+  +  H EDK         SSF A   + +SRS P++ 
Sbjct: 520 ITSKDFLFWFR--SHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWEN 577

Query: 242 -----FPNLLADRRSFPSIKSRKISSTCYYIVMYGSDERSGSDAISRVRADADR 388
                  +LL  R SF   ++    +  +     G  E  G D +S V  +  R
Sbjct: 578 AEMDAIHSLLILRDSFKDAEASNSKAVVH--AQLGEMELQGIDELSSVAREMVR 629

>FEOB_SALTI (Q83ST5) Ferrous iron transport protein B|
          Length = 772

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 22/83 (26%), Positives = 38/83 (45%)
 Frame = +3

Query: 24  ATNFNYLYVQITTSPALSVFGLVLLLTNCG*FGWLTFHIHACFSSMPNLTATLKTRAASM 203
           A  ++YL   +   P +SV G +   ++ G   W++F I    +   +L        A++
Sbjct: 662 AAAYSYLIFVLLYVPCISVMGAIARESSRG---WMSFSILWGLNIAYSL--------ATL 710

Query: 204 LHQA*QKADHPTNSLTCSLTGVV 272
            +Q    + HPT SL C L  +V
Sbjct: 711 FYQVTSFSQHPTYSLICILAVIV 733

>FEOB_SALPA (Q5PLZ1) Ferrous iron transport protein B|
          Length = 772

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 22/83 (26%), Positives = 38/83 (45%)
 Frame = +3

Query: 24  ATNFNYLYVQITTSPALSVFGLVLLLTNCG*FGWLTFHIHACFSSMPNLTATLKTRAASM 203
           A  ++YL   +   P +SV G +   ++ G   W++F I    +   +L        A++
Sbjct: 662 AAAYSYLIFVLLYVPCISVMGAIARESSRG---WMSFSILWGLNIAYSL--------ATL 710

Query: 204 LHQA*QKADHPTNSLTCSLTGVV 272
            +Q    + HPT SL C L  +V
Sbjct: 711 FYQVTSFSQHPTYSLICILAVIV 733

>ENV_MLVFR (P03395) Coat protein GP70|
          Length = 445

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 80  VWTSSITYKLWVIWLAHISHTCMLLKYAKSHSHSEDKSSFHAPP 211
           VW  S  + LW  W       CML  +   H   E ++ + +PP
Sbjct: 25  VWAISGNHPLWTWWPVLTPDLCMLALHGPPHWGLEYQAPYSSPP 68

>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1407

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 162 PNLTATLKTRAASMLHQA*QKADH----PTNSLTCSLTGVVSLRSNHGRSAALVTTLSCM 329
           P  TA  +T  AS    A   +DH    PT+          S RS HGRS++ + TL+ +
Sbjct: 33  PCSTADYRTYRASREISASATSDHVRSTPTDKRPSPADVPASHRSGHGRSSSTIDTLATI 92

Query: 330 A 332
           A
Sbjct: 93  A 93

>FABH_XYLFT (Q87CL7) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 324

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 278 SIKSRKISSTCYYIVMYGSDERSGSDAISRVRADADRPTDISCSTFGDGTGA 433
           S+  + +SS C   V+       G+D ++R+   +DR T   C  FGDG GA
Sbjct: 124 SVAEKFVSSGCSKTVLV-----VGADTLTRIIDWSDRTT---CVLFGDGAGA 167

>FABH_XYLFA (Q9PCG4) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 324

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 278 SIKSRKISSTCYYIVMYGSDERSGSDAISRVRADADRPTDISCSTFGDGTGA 433
           S+  + +SS C   V+       G+D ++R+   +DR T   C  FGDG GA
Sbjct: 124 SVAEKFVSSGCSKTVLV-----VGADTLTRIIDWSDRTT---CVLFGDGAGA 167

>RIN2_MOUSE (Q9D684) Ras and Rab interactor 2 (Ras interaction/interference|
           protein 2)
          Length = 903

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 435 PAPVPSPNVEQEMSVGRSASARTREIASLPLRSSEP 328
           P P+P P ++++ S   + S+     A  P RSSEP
Sbjct: 353 PTPIPPPRLKKQASFLEAESSAKTLTARRPSRSSEP 388

>FABH_GLOVI (Q7NF35) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 329

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 347 GSDAISRVRADADRPTDISCSTFGDGTGA 433
           G+DA+SR     DR T   C  FGDG GA
Sbjct: 138 GADALSRYTDWTDRAT---CVLFGDGAGA 163

>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)|
          Length = 982

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +2

Query: 179 SEDKSSFHAPPSIAESRSPYQFPNLLADRRSFPSIKSRKISSTCYYIVMYGSDERS--GS 352
           S  KSS  +PPS    +SP   PN +  R S  S  +   +S C       ++ RS   S
Sbjct: 265 SSMKSSISSPPSHCSVKSPVSSPNNVTPRSSVSS-PANINNSRCSVSSPSNTNNRSTLSS 323

Query: 353 DAISRVRADADRPTDISCSTFGDGTGAG 436
            A S V +    P + + S    GT AG
Sbjct: 324 PAASTVGSICS-PVNNAFSYTASGTSAG 350


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,179,603
Number of Sequences: 219361
Number of extensions: 1221527
Number of successful extensions: 3574
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3573
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)