ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet08f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
2emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4,... 48 0.021
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
4dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
5dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
6dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
7ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
8gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 44 0.33
9emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr... 42 1.3
10gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, com... 40 5.1
11gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, c... 40 5.1
12gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, compl... 40 5.1
13emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chr... 40 5.1
14emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 o... 40 5.1
15gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, compl... 40 5.1
16gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, comple... 40 5.1
17emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in... 40 5.1
18emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in... 40 5.1
19emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in ... 40 5.1
20emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chr... 40 5.1
21gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31)... 40 5.1
22emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 5.1

>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full
           insert sequence
          Length = 1067

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgcct 384
           |||||||||||  ||||||||||||||||||| |||||||
Sbjct: 837 gctcagttgctggggctgctccggaaggagcccagcgcct 798



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>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 345   gctcagttgctccggctgctccggaaggagccgagcgcct 384
             |||||||||||  || |||||||||||||||| |||||||
Sbjct: 90998 gctcagttgctggggttgctccggaaggagcccagcgcct 91037



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 345     gctcagttgctccggctgctccggaaggagccgagcgcct 384
               |||||||||||  || |||||||||||||||| |||||||
Sbjct: 8906689 gctcagttgctggggttgctccggaaggagcccagcgcct 8906728



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>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full
           insert sequence
          Length = 1308

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgcct 384
           |||||||||||  || |||||||||||||||| |||||||
Sbjct: 950 gctcagttgctggggttgctccggaaggagcccagcgcct 911



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>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full
           insert sequence
          Length = 1309

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgcct 384
           |||||||||||  || |||||||||||||||| |||||||
Sbjct: 944 gctcagttgctggggttgctccggaaggagcccagcgcct 905



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>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full
           insert sequence
          Length = 1296

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 345 gctcagttgctccggctgctccggaaggagccgagcgcct 384
           |||||||||||  || |||||||||||||||| |||||||
Sbjct: 938 gctcagttgctggggttgctccggaaggagcccagcgcct 899



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>ref|XM_475029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 347 tcagttgctccggctgctccggaaggagccgagcgcct 384
           |||||||||  || |||||||||||||||| |||||||
Sbjct: 849 tcagttgctggggttgctccggaaggagcccagcgcct 812



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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 190   actcacatgcatgcacagacac 211
             ||||||||||||||||||||||
Sbjct: 66966 actcacatgcatgcacagacac 66987



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>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
             sequence
          Length = 201673

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tcacatgcatgcacagacact 212
             |||||||||||||||||||||
Sbjct: 42516 tcacatgcatgcacagacact 42536



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>gb|AC106834.9| Mus musculus chromosome 19, clone RP24-132H7, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 193    cacatgcatgcacagacactgaac 216
              |||||||||||||| |||||||||
Sbjct: 133853 cacatgcatgcacacacactgaac 133830



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>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence
          Length = 245390

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 46326 cacatgcatgcacacacactgaac 46303



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>gb|AC011352.6| Homo sapiens chromosome 5 clone CTC-327F10, complete sequence
          Length = 166644

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   cacatgcatgcacagacactgaac 216
             |||||||||||||| |||||||||
Sbjct: 86180 cacatgcatgcacacacactgaac 86203



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>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the
             5' end of the SLIT1 gene for slit homolog 1 (Drosophila),
             a novel gene and a CpG island, complete sequence
          Length = 172510

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tggaggagcagtactgccaa 254
             ||||||||||||||||||||
Sbjct: 39310 tggaggagcagtactgccaa 39329



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>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the
              3' end of a variant of the EPM2A gene for progressive
              myoclonus type 2 epilepsy (Lafora disease) protein
              (laforin) and a BTB/POZ domain zinc finger protein
              pseudogene, complete sequence
          Length = 115835

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    tgcatgcacagacactgaac 216
              ||||||||||||||||||||
Sbjct: 106284 tgcatgcacagacactgaac 106265



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>gb|AC011424.4| Homo sapiens chromosome 5 clone P1_1242F12, complete sequence
          Length = 84991

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    aataaattaataattcatgctcca 33
             |||| |||||||||||||||||||
Sbjct: 49447 aatagattaataattcatgctcca 49424



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>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    cacatgcatgcacagacact 212
              ||||||||||||||||||||
Sbjct: 179733 cacatgcatgcacagacact 179714



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>emb|BX663521.10| Zebrafish DNA sequence from clone DKEYP-50F5 in linkage group 14,
              complete sequence
          Length = 179663

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     cggttttacaggttcaatcc 77
              ||||||||||||||||||||
Sbjct: 113082 cggttttacaggttcaatcc 113101



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>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14,
             complete sequence
          Length = 217550

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     acaataaattaataattcat 27
             ||||||||||||||||||||
Sbjct: 64381 acaataaattaataattcat 64400



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>emb|BX005274.11| Zebrafish DNA sequence from clone DKEY-77B9 in linkage group 19,
             complete sequence
          Length = 165012

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   gttgcattaaattattggcc 339
             ||||||||||||||||||||
Sbjct: 80678 gttgcattaaattattggcc 80697



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>emb|CT030247.6| Mouse DNA sequence from clone RP23-340G24 on chromosome 9, complete
              sequence
          Length = 218753

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cacacaataaattaataatt 24
              ||||||||||||||||||||
Sbjct: 208348 cacacaataaattaataatt 208329



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>gb|AC002209.1|AC002209 Homo sapiens (subclone 2_e10 from P1 H31) DNA sequence, complete
            sequence
          Length = 4858

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 10   aataaattaataattcatgctcca 33
            |||| |||||||||||||||||||
Sbjct: 4251 aatagattaataattcatgctcca 4274



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>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
             sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     acacaataaattaataattc 25
             ||||||||||||||||||||
Sbjct: 83233 acacaataaattaataattc 83214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,938,739
Number of Sequences: 3902068
Number of extensions: 2938739
Number of successful extensions: 66544
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66476
Number of HSP's gapped (non-prelim): 68
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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