| Clone Name | rbaet08e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 75.8 bits (38), Expect = 9e-11 Identities = 110/134 (82%) Strand = Plus / Minus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaactccgtgttggccaccccc 289 |||||||||| |||||||| |||| ||||||||| |||||||| |||||| | ||| Sbjct: 1475 agcgcccagtcgaagcagtgcagcaggttggccagcgtgaactccacgttggcggcgccc 1416 Query: 290 atggccagccctggacagatccggcggcccgcgccgaagggcaggagctcgtaatgcccg 349 ||||| | || || |||||||| || |||| ||||| |||||||||||| | |||||| Sbjct: 1415 atggcgatgccggggcagatccgccgccccgacccgaacggcaggagctcgaagtgcccg 1356 Query: 350 ccgttgaagtccac 363 |||||||| ||||| Sbjct: 1355 ccgttgaactccac 1342
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 9e-11 Identities = 110/134 (82%) Strand = Plus / Minus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaactccgtgttggccaccccc 289 |||||||||| |||||||| |||| ||||||||| |||||||| |||||| | ||| Sbjct: 35476995 agcgcccagtcgaagcagtgcagcaggttggccagcgtgaactccacgttggcggcgccc 35476936 Query: 290 atggccagccctggacagatccggcggcccgcgccgaagggcaggagctcgtaatgcccg 349 ||||| | || || |||||||| || |||| ||||| |||||||||||| | |||||| Sbjct: 35476935 atggcgatgccggggcagatccgccgccccgacccgaacggcaggagctcgaagtgcccg 35476876 Query: 350 ccgttgaagtccac 363 |||||||| ||||| Sbjct: 35476875 ccgttgaactccac 35476862 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 260 gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggccc 319 |||| ||||||||| |||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 20365334 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcca 20365275 Query: 320 gcgccgaagggcaggagctcgtaatgcccgccgttgaagtc 360 | ||| || |||| |||||| |||| | ||||||||||| Sbjct: 20365274 gagccaaatggcaccagctcgaaatgtgccccgttgaagtc 20365234
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 9e-11 Identities = 110/134 (82%) Strand = Plus / Minus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaactccgtgttggccaccccc 289 |||||||||| |||||||| |||| ||||||||| |||||||| |||||| | ||| Sbjct: 35567067 agcgcccagtcgaagcagtgcagcaggttggccagcgtgaactccacgttggcggcgccc 35567008 Query: 290 atggccagccctggacagatccggcggcccgcgccgaagggcaggagctcgtaatgcccg 349 ||||| | || || |||||||| || |||| ||||| |||||||||||| | |||||| Sbjct: 35567007 atggcgatgccggggcagatccgccgccccgacccgaacggcaggagctcgaagtgcccg 35566948 Query: 350 ccgttgaagtccac 363 |||||||| ||||| Sbjct: 35566947 ccgttgaactccac 35566934 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 260 gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggccc 319 |||| ||||||||| |||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 20358363 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcca 20358304 Query: 320 gcgccgaagggcaggagctcgtaatgcccgccgttgaagtc 360 | ||| || |||| |||||| |||| | ||||||||||| Sbjct: 20358303 gagccaaatggcaccagctcgaaatgtgccccgttgaagtc 20358263
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 75.8 bits (38), Expect = 9e-11 Identities = 110/134 (82%) Strand = Plus / Plus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaactccgtgttggccaccccc 289 |||||||||| |||||||| |||| ||||||||| |||||||| |||||| | ||| Sbjct: 10631 agcgcccagtcgaagcagtgcagcaggttggccagcgtgaactccacgttggcggcgccc 10690 Query: 290 atggccagccctggacagatccggcggcccgcgccgaagggcaggagctcgtaatgcccg 349 ||||| | || || |||||||| || |||| ||||| |||||||||||| | |||||| Sbjct: 10691 atggcgatgccggggcagatccgccgccccgacccgaacggcaggagctcgaagtgcccg 10750 Query: 350 ccgttgaagtccac 363 |||||||| ||||| Sbjct: 10751 ccgttgaactccac 10764
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 75.8 bits (38), Expect = 9e-11 Identities = 110/134 (82%) Strand = Plus / Minus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaactccgtgttggccaccccc 289 |||||||||| |||||||| |||| ||||||||| |||||||| |||||| | ||| Sbjct: 9958 agcgcccagtcgaagcagtgcagcaggttggccagcgtgaactccacgttggcggcgccc 9899 Query: 290 atggccagccctggacagatccggcggcccgcgccgaagggcaggagctcgtaatgcccg 349 ||||| | || || |||||||| || |||| ||||| |||||||||||| | |||||| Sbjct: 9898 atggcgatgccggggcagatccgccgccccgacccgaacggcaggagctcgaagtgcccg 9839 Query: 350 ccgttgaagtccac 363 |||||||| ||||| Sbjct: 9838 ccgttgaactccac 9825
>ref|NM_184768.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 260 gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggccc 319 |||| ||||||||| |||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 908 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcca 849 Query: 320 gcgccgaagggcaggagctcgtaatgcccgccgttgaagtc 360 | ||| || |||| |||||| |||| | ||||||||||| Sbjct: 848 gagccaaatggcaccagctcgaaatgtgccccgttgaagtc 808
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 260 gccaggatgaactccgtgttggccacccccatggccagccctggacagatccggcggccc 319 |||| ||||||||| |||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 9634 gccaagatgaactcgatgttggccactcccatggccagccccgggcaaatccgacggcca 9575 Query: 320 gcgccgaagggcaggagctcgtaatgcccgccgttgaagtc 360 | ||| || |||| |||||| |||| | ||||||||||| Sbjct: 9574 gagccaaatggcaccagctcgaaatgtgccccgttgaagtc 9534
>gb|AY735914.1| Hordeum vulgare subsp. vulgare clone cLN15-45-37.1A.9 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||| |||||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 86 cggcggccggcgccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735916.1| Hordeum vulgare subsp. vulgare clone cLN15-42-37.1A.6 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||| ||| |||||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 86 cggctgccggcgccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735908.1| Hordeum vulgare subsp. vulgare clone cLN15-22-30.3B.7 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||| | |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 86 cggcggccggagccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735907.1| Hordeum vulgare subsp. vulgare clone cLN15-30-32.3B.45 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||| | |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 86 cggcggccggagccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in linkage group 23, complete sequence Length = 220945 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaagcatata 101 ||||||||||||||||||| |||||||| Sbjct: 172635 tttatttttatttaaagaacagcatata 172662
>gb|AC120411.9| Mus musculus chromosome 6, clone RP24-447O2, complete sequence Length = 202938 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 249 agagcaagttggccaggatgaac 271 ||||||||||||||||||||||| Sbjct: 160099 agagcaagttggccaggatgaac 160121
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence Length = 141653 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 249 agagcaagttggccaggatgaac 271 ||||||||||||||||||||||| Sbjct: 44535 agagcaagttggccaggatgaac 44557
>gb|AY735906.1| Hordeum vulgare subsp. vulgare clone cLN15-47-38.3B.5 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 46.1 bits (23), Expect = 0.083 Identities = 47/55 (85%) Strand = Plus / Minus Query: 313 gcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||| | |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 84 gcggccggagccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735924.1| Hordeum vulgare subsp. vulgare clone hLN15-49-40.3A.10 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735923.1| Hordeum vulgare subsp. vulgare clone hLN15-50-40.3A.11 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735922.1| Hordeum vulgare subsp. vulgare clone hLN15-51-40.3A.12 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735921.1| Hordeum vulgare subsp. vulgare clone hLN15-56-40.1B.24B cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735920.1| Hordeum vulgare subsp. vulgare clone cLN15-55-32.3B.38 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735919.1| Hordeum vulgare subsp. vulgare clone hLN15-55-40.1B.23B cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735918.1| Hordeum vulgare subsp. vulgare clone cLN15-04-32.3C.86 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735917.1| Hordeum vulgare subsp. vulgare clone cLN15-19-32.3D.112 cytochrome P450 (CYP P450) gene, partial cds Length = 93 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735911.1| Hordeum vulgare subsp. vulgare clone cLN15-21-31.3A.38 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735910.1| Hordeum vulgare subsp. vulgare clone cLN15-14--31.3A.6 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>gb|AY735909.1| Hordeum vulgare subsp. vulgare clone hLN15-61-39.1B.42 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 44.1 bits (22), Expect = 0.33 Identities = 40/46 (86%) Strand = Plus / Minus Query: 322 gccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||||||||||| |||||| |||| |||| |||||||| |||||| Sbjct: 75 gccgaagggcagaagctcgaaatgtgcgccattgaagtcaacatcc 30
>ref|XM_465542.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1910 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 1523 cggcggcccacgccgaagggcagga 1499
>ref|XM_465538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1602 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 1418 cggcggcccacgccgaagggcagga 1394
>gb|AC154033.1| Solanum demissum chromosome 5 clone PGEC132D05 map MAP_LOC, complete sequence Length = 118497 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 41417 tttatttttatttaaagaaaa 41437
>gb|AC151803.1| Solanum demissum chromosome 5 BAC PGEC979H09 genomic sequence, complete sequence Length = 110954 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 47126 tttatttttatttaaagaaaa 47146
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaagcat 98 ||||||||||| ||||||||||||| Sbjct: 3000327 tttatttttatgtaaagaaaagcat 3000351
>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5' end of the Fgf2 gene for fibroblast growth factor 2, a novel gene (A930011G24RIK), a mitochondrial ribosomal protein S33 (Mrps33) pseudogene, a novel gene (gene model 1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a novel gene, the 5' end of the Il21 gene for interleukin 21 and a CpG island, complete sequence Length = 133023 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 107274 tttatttttatttaaagaaaa 107294
>emb|BX004761.10| Zebrafish DNA sequence from clone DKEY-11I10 in linkage group 20 Contains a novel gene and a CpG island, complete sequence Length = 132841 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gtttatttttatttaaagaaa 93 ||||||||||||||||||||| Sbjct: 33250 gtttatttttatttaaagaaa 33270
>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence Length = 166659 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 99349 tttatttttatttaaagaaaa 99369
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 79 ttttatttaaagaaaagcatatagaaaat 107 |||| |||||||||||||||||| ||||| Sbjct: 11712444 ttttttttaaagaaaagcatatacaaaat 11712472
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 308 atccggcggcccgcgccgaagggcaggagctcg 340 ||||||||||| |||||||| |||| ||||||| Sbjct: 25654308 atccggcggccggcgccgaatggcaagagctcg 25654276
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 15836250 cggcggcccacgccgaagggcagga 15836226 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 15817016 cggcggcccacgccgaagggcagga 15817040
>gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complete sequence Length = 206624 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 gtttatttttatttaaagaaa 93 ||||||||||||||||||||| Sbjct: 58243 gtttatttttatttaaagaaa 58263
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 79 ttttatttaaagaaaagcatatagaaaat 107 |||| |||||||||||||||||| ||||| Sbjct: 147078 ttttttttaaagaaaagcatatacaaaat 147106
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 308 atccggcggcccgcgccgaagggcaggagctcg 340 ||||||||||| |||||||| |||| ||||||| Sbjct: 77753 atccggcggccggcgccgaatggcaagagctcg 77721
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 94190 cggcggcccacgccgaagggcagga 94166 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 74956 cggcggcccacgccgaagggcagga 74980
>dbj|AK072588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G16, full insert sequence Length = 1910 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcagga 335 ||||||||| ||||||||||||||| Sbjct: 1524 cggcggcccacgccgaagggcagga 1500
>gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (CYP71E1) mRNA, complete cds Length = 1929 Score = 42.1 bits (21), Expect = 1.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 230 agcgcccagttgaagcagtagagcaagttggccaggatgaa 270 |||||||||| | |||||||||||| |||||| ||| |||| Sbjct: 1558 agcgcccagtcgtagcagtagagcaggttggcgagggtgaa 1518
>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence Length = 228174 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 ccacccccatggccagccctg 302 ||||||||||||||||||||| Sbjct: 78162 ccacccccatggccagccctg 78142
>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete sequence Length = 120808 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 26274 tttatttttatttaaagaaaa 26294
>gb|AY735915.1| Hordeum vulgare subsp. vulgare clone cLN15-43-37.1A.7 cytochrome P450 (CYP P450) gene, partial cds Length = 87 Score = 42.1 bits (21), Expect = 1.3 Identities = 48/57 (84%) Strand = Plus / Minus Query: 311 cggcggcccgcgccgaagggcaggagctcgtaatgcccgccgttgaagtccacatcc 367 |||| ||| |||||||||||||| |||||| |||| |||| |||||| | |||||| Sbjct: 86 cggctgccggcgccgaagggcagaagctcgaaatgtgcgccattgaagccaacatcc 30
>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete sequence Length = 120928 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaaa 94 ||||||||||||||||||||| Sbjct: 87429 tttatttttatttaaagaaaa 87449
>ref|NM_021999.2| Homo sapiens integral membrane protein 2B (ITM2B), mRNA Length = 1896 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1821 ttatttttatttaaagaaaa 1802
>gb|AC121832.3| Mus musculus chromosome 10 clone RP24-67D23, complete sequence Length = 172348 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 cccccatggccagccctggacaga 308 ||||||||||||||| |||||||| Sbjct: 8685 cccccatggccagccatggacaga 8662
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tatttttatttaaagaaaag 95 |||||||||||||||||||| Sbjct: 202914 tatttttatttaaagaaaag 202895
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete sequence Length = 196547 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 10455 ttatttttatttaaagaaaa 10474
>gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequence Length = 31889 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaa 93 |||||||||||||||||||| Sbjct: 21037 tttatttttatttaaagaaa 21056
>gb|AC140283.3| Mus musculus BAC clone RP24-510I14 from chromosome 18, complete sequence Length = 149264 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ttatttaaagaaaagcatat 100 |||||||||||||||||||| Sbjct: 4118 ttatttaaagaaaagcatat 4137
>gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosome 14, complete sequence Length = 181200 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 aaagaaaagcatatagaaaatactactt 114 ||||||||||| |||| ||||||||||| Sbjct: 66513 aaagaaaagcacatagcaaatactactt 66540
>ref|XM_960957.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0295c) partial mRNA Length = 3192 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 atttaaagaaaagcatatagaaaa 106 |||||||||| ||||||||||||| Sbjct: 1992 atttaaagaagagcatatagaaaa 2015
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence Length = 207763 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 cccccatggccagccctggacaga 308 ||||||||||||||| |||||||| Sbjct: 23836 cccccatggccagccatggacaga 23859
>emb|AL357395.13| Human DNA sequence from clone RP11-31L23 on chromosome 10 Contains the TLX1 gene for T-cell leukemia homeobox 1, the 5' end of a novel gene, the C10orf1 gene for chromosome 10 open reading frame 1 and four CpG islands, complete sequence Length = 51099 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaa 93 |||||||||||||||||||| Sbjct: 13451 tttatttttatttaaagaaa 13470
>gb|AF086918.1| Homo sapiens E3-16 mRNA, complete cds Length = 1752 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1727 ttatttttatttaaagaaaa 1708
>gb|AY341247.1| Homo sapiens integral membrane protein 2B (ITM2B) gene, complete cds Length = 31401 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 30040 ttatttttatttaaagaaaa 30021
>emb|AL139322.13| Human DNA sequence from clone RP11-196P14 on chromosome 13 Contains the ITM2B gene for integral membrane protein 2B (BRI FBD E25B E3-16) and a CpG island, complete sequence Length = 120773 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 94260 ttatttttatttaaagaaaa 94241
>emb|AL137184.15| Human DNA sequence from clone RP3-401D24 on chromosome 6, complete sequence Length = 112124 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 22695 ttatttttatttaaagaaaa 22714
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence Length = 201073 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ttatttaaagaaaagcatat 100 |||||||||||||||||||| Sbjct: 50718 ttatttaaagaaaagcatat 50699
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 atttaaagaaaagcatatagaaaa 106 |||||||||| ||||||||||||| Sbjct: 251809 atttaaagaagagcatatagaaaa 251786
>gb|AC104162.2| Homo sapiens chromosome 3 clone RP11-50F24, complete sequence Length = 178337 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tttaaagaaaagcatataga 103 |||||||||||||||||||| Sbjct: 27313 tttaaagaaaagcatataga 27294
>gb|AC183417.2| Pan troglodytes BAC clone CH251-173K9 from chromosome 6, complete sequence Length = 158234 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 114855 ttatttttatttaaagaaaa 114874
>gb|AC083836.6| Homo sapiens, clone RP11-90D11, complete sequence Length = 173428 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 catggccagccctggacaga 308 |||||||||||||||||||| Sbjct: 139058 catggccagccctggacaga 139077
>emb|BX321875.7| Zebrafish DNA sequence from clone CH211-254C8 in linkage group 16, complete sequence Length = 169994 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tttttatttaaagaaaagca 97 |||||||||||||||||||| Sbjct: 17597 tttttatttaaagaaaagca 17578
>emb|CR626358.1| full-length cDNA clone CS0DE009YK12 of Placenta of Homo sapiens (human) Length = 1810 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1752 ttatttttatttaaagaaaa 1733
>emb|CR610712.1| full-length cDNA clone CS0DI061YL18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1741 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1741 ttatttttatttaaagaaaa 1722
>emb|CR590893.1| full-length cDNA clone CS0DN004YE20 of Adult brain of Homo sapiens (human) Length = 1764 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1734 ttatttttatttaaagaaaa 1715
>gb|AC152398.7| Mus musculus chromosome 18, clone RP23-458M2, complete sequence Length = 180614 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tatttttatttaaagaaaag 95 |||||||||||||||||||| Sbjct: 167197 tatttttatttaaagaaaag 167216
>gb|AC024995.8| Homo sapiens, clone RP11-328L11, complete sequence Length = 171873 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 catggccagccctggacaga 308 |||||||||||||||||||| Sbjct: 39610 catggccagccctggacaga 39629
>dbj|AB168350.1| Macaca fascicularis testis cDNA clone: QtsA-11432, similar to human integral membrane protein 2B (ITM2B), mRNA, RefSeq: NM_021999.2 Length = 1851 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1763 ttatttttatttaaagaaaa 1744
>gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone BACR05N10, complete sequence Length = 169600 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gtttatttttatttaaagaaaagc 96 ||||||||||||||||| |||||| Sbjct: 94491 gtttatttttatttaaaaaaaagc 94468
>ref|NM_072717.2| Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA, complete cds Length = 2215 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttatttttatttaaagaaa 93 |||||||||||||||||||| Sbjct: 2208 tttatttttatttaaagaaa 2189
>gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, complete cds Length = 2144 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 2083 ttatttttatttaaagaaaa 2064
>gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR01A03, complete sequence Length = 155254 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gtttatttttatttaaagaaaagc 96 ||||||||||||||||| |||||| Sbjct: 67577 gtttatttttatttaaaaaaaagc 67554
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 cccctgagggagcgcccagttgaa 243 |||||||| ||||||||||||||| Sbjct: 3214193 cccctgagcgagcgcccagttgaa 3214170
>gb|AF136973.1|AF136973 Homo sapiens putative transmembrane protein E3-16 mRNA, complete cds Length = 1896 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1821 ttatttttatttaaagaaaa 1802
>ref|XM_344562.2| PREDICTED: Rattus norvegicus similar to CG4502-PA (predicted) (LOC364660), mRNA Length = 1329 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 caggatgaactccgtgttgg 281 |||||||||||||||||||| Sbjct: 405 caggatgaactccgtgttgg 386
>gb|AF449578.1| Pycreus mundtii trnL-trnF intergenic spacer region, plastid sequence Length = 409 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 78 tttttatttaaagaaaagcatatagaaa 105 ||||| |||||| ||||||||||||||| Sbjct: 170 tttttttttaaataaaagcatatagaaa 143
>gb|AF246221.1|AF246221 Homo sapiens transmembrane protein BRI mRNA, complete cds Length = 1853 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1786 ttatttttatttaaagaaaa 1767
>emb|BX545918.4| Zebrafish DNA sequence from clone DKEYP-22F11 in linkage group 8, complete sequence Length = 149121 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gaaataacacaacaaattaa 43 |||||||||||||||||||| Sbjct: 12200 gaaataacacaacaaattaa 12181
>emb|AJ583530.1| Triticum aestivum mRNA for cytochrome P450 (CYP98A10 gene) Length = 1818 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cggcccgcgccgaagggcag 333 |||||||||||||||||||| Sbjct: 1361 cggcccgcgccgaagggcag 1342
>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9, complete sequence Length = 171835 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 tttttatttaaagaaaagcatata 101 ||||||||||||||| |||||||| Sbjct: 18789 tttttatttaaagaacagcatata 18766
>dbj|AK130048.1| Homo sapiens cDNA FLJ26538 fis, clone KDN09296, highly similar to Integral membrane protein 2B Length = 1825 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1765 ttatttttatttaaagaaaa 1746
>gb|AF152462.1|AF152462 Homo sapiens transmembrane protein BRI (BRI) mRNA, complete cds Length = 1843 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1776 ttatttttatttaaagaaaa 1757
>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete sequence Length = 262745 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gtttatttttatttaaagaaaagc 96 ||||||||||||||||| |||||| Sbjct: 168226 gtttatttttatttaaaaaaaagc 168203
>gb|DQ307173.1| Glossina morsitans morsitans clone TC1637 serine protease inhibitor 4 (Spn4) mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 1361 ttatttttatttaaagaaaa 1342
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tttatttttatttaaagaaa 93 |||||||||||||||||||| Sbjct: 91146 tttatttttatttaaagaaa 91165
>emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on chromosome X, complete sequence Length = 202742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 acttctcctccttgtctggg 130 |||||||||||||||||||| Sbjct: 9870 acttctcctccttgtctggg 9851
>gb|AC012557.23| Homo sapiens 3 BAC RP11-245J9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189220 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tttaaagaaaagcatataga 103 |||||||||||||||||||| Sbjct: 31347 tttaaagaaaagcatataga 31366
>dbj|AP004220.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1483D9 Length = 162604 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 catggccagccctggacaga 308 |||||||||||||||||||| Sbjct: 29375 catggccagccctggacaga 29356
>emb|AL354926.17| Human DNA sequence from clone RP1-216J23 on chromosome 6, complete sequence Length = 163140 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ttatttttatttaaagaaaa 94 |||||||||||||||||||| Sbjct: 64981 ttatttttatttaaagaaaa 65000 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,809,481 Number of Sequences: 3902068 Number of extensions: 4809481 Number of successful extensions: 142972 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142578 Number of HSP's gapped (non-prelim): 394 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)