ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet08d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB029935.1| Triticum aestivum mRNA for chitinase 2, complete... 76 3e-11
2gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence 44 0.092
3emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on ch... 42 0.36
4gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, comp... 40 1.4
5gb|AC113021.10| Mus musculus chromosome 6, clone RP23-186F2, com... 40 1.4
6gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complet... 40 1.4
7gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, com... 40 1.4
8gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, comp... 40 1.4
9gb|BC031430.1| Mus musculus nucleotide binding protein 1, mRNA (... 38 5.6
10ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA 38 5.6
11gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, com... 38 5.6
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 5.6
13gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosom... 38 5.6
14gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome... 38 5.6
15gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, comple... 38 5.6
16gb|AC099654.5| Homo sapiens BAC clone RP11-1217F2 from 7, comple... 38 5.6
17gb|BC068110.1| Mus musculus similar to RIKEN cDNA 1810036I24, mR... 38 5.6
18emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chr... 38 5.6
19gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence 38 5.6
20gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom... 38 5.6
21emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chr... 38 5.6
22gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, c... 38 5.6
23emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in ... 38 5.6
24gb|AC104142.6| Drosophila melanogaster X BAC RP98-13K19 (Roswell... 38 5.6
25gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Canc... 38 5.6
26gb|AC087885.17| Homo sapiens 12q BAC RP11-173C19 (Roswell Park C... 38 5.6
27gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell... 38 5.6
28gb|AY224481.1| Oryza sativa (japonica cultivar-group) isolate 29... 38 5.6
29gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone ... 38 5.6
30gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 38 5.6
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
32gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, compl... 38 5.6
33gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, com... 38 5.6
34gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromos... 38 5.6
35gb|AC132938.9| Homo sapiens chromosome 17, clone RP13-20L14, com... 38 5.6
36ref|NM_001013778.1| Mus musculus similar to RIKEN cDNA 1810036I2... 38 5.6
37gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, compl... 38 5.6
38emb|CR388128.18| Zebrafish DNA sequence from clone CH211-127B17 ... 38 5.6
39gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 o... 38 5.6
40gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 38 5.6 
>dbj|AB029935.1| Triticum aestivum mRNA for chitinase 2, complete cds
          Length = 1163

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                              
Query: 9    ctggacatccatttatttggtcataaaatacttaccaagattatttattt 58
            |||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1081 ctggtcatccatttatttggtcataaagtacttcccaagattatttattt 1032
to top
>gb|AC084760.2| Gallus gallus clone WAG-65N20, complete sequence
          Length = 109569

 Score = 44.1 bits (22), Expect = 0.092
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 22    tatttggtcataaaatacttac 43
             ||||||||||||||||||||||
Sbjct: 23660 tatttggtcataaaatacttac 23639
to top
>emb|AL591393.10| Human DNA sequence from clone RP11-224J22 on chromosome 9 Contains a
             novel gene (FLJ33868) and 2 CpG islands, complete sequence
          Length = 174911

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 34    aaatacttaccaagattatttattt 58
             |||||||||||||| ||||||||||
Sbjct: 80594 aaatacttaccaagtttatttattt 80570
to top
>gb|AC166486.5| Mus musculus chromosome 1, clone RP23-187M9, complete sequence
          Length = 187098

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ccatttatttggtcataaaa 36
             ||||||||||||||||||||
Sbjct: 13104 ccatttatttggtcataaaa 13085
to top
>gb|AC113021.10| Mus musculus chromosome 6, clone RP23-186F2, complete sequence
          Length = 198397

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ccaagattatttatttgggg 62
             ||||||||||||||||||||
Sbjct: 82945 ccaagattatttatttgggg 82964
to top
>gb|AC121591.4| Mus musculus BAC clone RP23-289H3 from 1, complete sequence
          Length = 195393

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ccatttatttggtcataaaa 36
             ||||||||||||||||||||
Sbjct: 12989 ccatttatttggtcataaaa 13008
to top
>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 46     agattatttatttgggggggatca 69
              ||||||||||||||| ||||||||
Sbjct: 130443 agattatttatttggaggggatca 130420
to top
>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     agattatttatttgggggggatca 69
              ||||||||||||||| ||||||||
Sbjct: 139958 agattatttatttggaggggatca 139981
to top
>gb|BC031430.1| Mus musculus nucleotide binding protein 1, mRNA (cDNA clone
            IMAGE:3674511), containing frame-shift errors
          Length = 2154

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    tggaagggctggacatcca 19
            |||||||||||||||||||
Sbjct: 1931 tggaagggctggacatcca 1913
to top
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 104 cccaattttatgatctcac 122
           |||||||||||||||||||
Sbjct: 505 cccaattttatgatctcac 487
to top
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence
          Length = 212083

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     atacttaccaagattattt 54
              |||||||||||||||||||
Sbjct: 174035 atacttaccaagattattt 174053
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      cccaattttatgatctcac 122
                |||||||||||||||||||
Sbjct: 35980043 cccaattttatgatctcac 35980061
to top
>gb|AC122352.4| Mus musculus BAC clone RP23-389C11 from chromosome 16, complete
             sequence
          Length = 196519

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     tggaagggctggacatcca 19
             |||||||||||||||||||
Sbjct: 20118 tggaagggctggacatcca 20100
to top
>gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome 16, complete
            sequence
          Length = 181463

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 40   ttaccaagattatttattt 58
            |||||||||||||||||||
Sbjct: 7248 ttaccaagattatttattt 7230
to top
>gb|AC115631.4| Mus musculus BAC clone RP24-128K6 from 18, complete sequence
          Length = 179355

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     attatttatttggggggga 66
              |||||||||||||||||||
Sbjct: 104743 attatttatttggggggga 104761
to top
>gb|AC099654.5| Homo sapiens BAC clone RP11-1217F2 from 7, complete sequence
          Length = 149259

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    ttatttatttgggggggat 67
             |||||||||||||||||||
Sbjct: 69147 ttatttatttgggggggat 69129
to top
>gb|BC068110.1| Mus musculus similar to RIKEN cDNA 1810036I24, mRNA (cDNA clone
           MGC:92960 IMAGE:5696118), complete cds
          Length = 3321

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tggaagggctggacatcca 19
           |||||||||||||||||||
Sbjct: 946 tggaagggctggacatcca 964
to top
>emb|AL138900.12| Human DNA sequence from clone RP11-85G21 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 182025

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 34     aaatacttaccaagattatttat 56
              ||||| |||||||||||||||||
Sbjct: 115751 aaatatttaccaagattatttat 115729
to top
>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence
          Length = 261093

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    attatttatttggggggga 66
             |||||||||||||||||||
Sbjct: 94142 attatttatttggggggga 94160
to top
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
             sequence
          Length = 164179

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   cccaattttatgatctcac 122
             |||||||||||||||||||
Sbjct: 41554 cccaattttatgatctcac 41572
to top
>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the 3'
              end of a novel gene (4933412J03Rik), a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              the Tnfsf15 gene for tumor necrosis factor (ligand)
              superfamily member 15 and the 3' end of the Tnfsf8 for
              tumor necrosis factor (ligand) superfamily member 8,
              complete sequence
          Length = 212420

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     gattatttatttggggggg 65
              |||||||||||||||||||
Sbjct: 158679 gattatttatttggggggg 158661
to top
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence
          Length = 171569

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   ttatttatttgggggggat 67
            |||||||||||||||||||
Sbjct: 8000 ttatttatttgggggggat 7982
to top
>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13, complete
              sequence
          Length = 166823

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     atttatttggtcataaaat 37
              |||||||||||||||||||
Sbjct: 136515 atttatttggtcataaaat 136533
to top
>gb|AC104142.6| Drosophila melanogaster X BAC RP98-13K19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 186753

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 39    cttaccaagattatttatttggg 61
             ||||| |||||||||||||||||
Sbjct: 61400 cttacgaagattatttatttggg 61422
to top
>gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 211335

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     ccatttatttggtcataaa 35
              |||||||||||||||||||
Sbjct: 137481 ccatttatttggtcataaa 137499
to top
>gb|AC087885.17| Homo sapiens 12q BAC RP11-173C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 100330

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    caagattatttatttgggg 62
             |||||||||||||||||||
Sbjct: 78393 caagattatttatttgggg 78375
to top
>gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 193714

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 39     cttaccaagattatttatttggg 61
              ||||| |||||||||||||||||
Sbjct: 137566 cttacgaagattatttatttggg 137588
to top
>gb|AY224481.1| Oryza sativa (japonica cultivar-group) isolate 29884 putative
           chaperonin 60 alpha subunit mRNA, partial cds
          Length = 673

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 104 cccaattttatgatctcac 122
           |||||||||||||||||||
Sbjct: 491 cccaattttatgatctcac 473
to top
>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence
          Length = 220811

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    attatttatttggggggga 66
             |||||||||||||||||||
Sbjct: 93514 attatttatttggggggga 93532
to top
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     tttggtcataaaatactta 42
              |||||||||||||||||||
Sbjct: 578543 tttggtcataaaatactta 578561
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      cccaattttatgatctcac 122
                |||||||||||||||||||
Sbjct: 36070117 cccaattttatgatctcac 36070135
to top
>gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, complete sequence
          Length = 185272

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    tttatttggtcataaaata 38
             |||||||||||||||||||
Sbjct: 90214 tttatttggtcataaaata 90232
to top
>gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, complete sequence
          Length = 180888

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     ccatttatttggtcataaa 35
              |||||||||||||||||||
Sbjct: 134371 ccatttatttggtcataaa 134389
to top
>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete sequence
          Length = 222089

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 20     tttatttggtcataaaata 38
              |||||||||||||||||||
Sbjct: 171465 tttatttggtcataaaata 171483
to top
>gb|AC132938.9| Homo sapiens chromosome 17, clone RP13-20L14, complete sequence
          Length = 154252

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     ttatttatttgggggggat 67
              |||||||||||||||||||
Sbjct: 128842 ttatttatttgggggggat 128824
to top
>ref|NM_001013778.1| Mus musculus similar to RIKEN cDNA 1810036I24 (LOC383103), mRNA
          Length = 3321

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tggaagggctggacatcca 19
           |||||||||||||||||||
Sbjct: 946 tggaagggctggacatcca 964
to top
>gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, complete sequence
          Length = 136341

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    ttaccaagattatttattt 58
             |||||||||||||||||||
Sbjct: 70162 ttaccaagattatttattt 70180
to top
>emb|CR388128.18| Zebrafish DNA sequence from clone CH211-127B17 in linkage group 18,
             complete sequence
          Length = 180022

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    ttaccaagattatttattt 58
             |||||||||||||||||||
Sbjct: 74500 ttaccaagattatttattt 74518
to top
>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete
              sequence
          Length = 292830

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 39     cttaccaagattatttatttggg 61
              ||||| |||||||||||||||||
Sbjct: 238307 cttacgaagattatttatttggg 238329
to top
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     atacttaccaagattattt 54
              |||||||||||||||||||
Sbjct: 162947 atacttaccaagattattt 162929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,413,788
Number of Sequences: 3902068
Number of extensions: 1413788
Number of successful extensions: 88224
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88123
Number of HSP's gapped (non-prelim): 101
length of query: 122
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 101
effective length of database: 17,151,101,840
effective search space: 1732261285840
effective search space used: 1732261285840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top