ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet08b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTR_NEUCR (P38680) N amino acid transport system protein (Methyl... 36 0.049
2UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated p... 28 7.7
3LIAF_BACSU (O32199) Protein liaF 28 7.7

>MTR_NEUCR (P38680) N amino acid transport system protein (Methyltryptophan|
           resistance protein)
          Length = 470

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -2

Query: 422 IVSTVLAISLPFFNDILGLLGALGFWPLTVYFPVEMY--ISQSKMKKYSRKW 273
           +++ V+A ++PFF+D+L +  AL     + YFP  MY  I+++  K   +K+
Sbjct: 372 LIAWVIAEAIPFFSDLLAICSALFISGFSFYFPALMYFKITRNDAKSQGKKY 423



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>UNC47_CAEEL (P34579) Vesicular GABA transporter (Uncoordinated protein 47)|
           (Protein unc-47)
          Length = 486

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 437 RTAFVIVSTVLAISLPFFNDILGLLGALGFWPLTVYFPV--EMYISQSKMKKYSRKW 273
           R   V+ +  +A+S+P+  +++GL+G +    L+  +P    +YI +  +  + +++
Sbjct: 398 RIILVLFTLFVALSVPYLVELMGLVGNITGTMLSFIWPALFHLYIKEKTLNNFEKRF 454



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>LIAF_BACSU (O32199) Protein liaF|
          Length = 241

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 410 VLAISLPFFNDILGLLGALGFWPLTVYFPVEMYISQSKMKKYSRKWV 270
           +    +  F  I+G+ G L FWPL  +F +  Y     +KKYSR W+
Sbjct: 11  IALFGISMFLQIIGI-GDLLFWPL--FFLIAGYF----LKKYSRDWL 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,768,956
Number of Sequences: 219361
Number of extensions: 699511
Number of successful extensions: 1713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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