>STRN_RAT (P70483) Striatin|
          Length = 780

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 NAVLKHETLPLMLVRHRHRHLK 180
           N V+ H TLP+ +  H  RH+K
Sbjct: 668 NRVISHPTLPISITAHEDRHIK 689

>STRN_MOUSE (O55106) Striatin|
          Length = 780

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 NAVLKHETLPLMLVRHRHRHLK 180
           N V+ H TLP+ +  H  RH+K
Sbjct: 668 NRVISHPTLPISITAHEDRHIK 689

>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)|
          Length = 464

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 274 FAKDRTISRLTELNSREYLEDF 209
           FA DRTISRL E+  +EY E +
Sbjct: 439 FAFDRTISRLYEMQKKEYWEQW 460

>SYKC_YEAST (P15180) Lysyl-tRNA synthetase, cytoplasmic (EC 6.1.1.6)|
           (Lysine--tRNA ligase) (LysRS)
          Length = 590

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 93  TRPAQGGMGEMLVFLSVVHVISQCAVM 13
           T+P +GG GE+ VF+S V +++ C  M
Sbjct: 188 TQPKKGGEGEVSVFVSRVQLLTPCLHM 214

>AREG_MOUSE (P31955) Amphiregulin precursor (AR) (Schwannoma-derived growth|
           factor) (SDGF)
          Length = 248

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 118 HYSFVININPPGSGRNGRNVGFPVSGACNFTVCRDVST 5
           HY+  + +N P SG+     G   +G    +V R+VST
Sbjct: 22  HYAAALELNDPSSGKGESLSGDHSAGGLELSVGREVST 59

>STRN3_MOUSE (Q9ERG2) Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)|
          Length = 796

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 NAVLKHETLPLMLVRHRHRHLK 180
           N V+ H TLP+ +  H  RH+K
Sbjct: 684 NRVVSHPTLPVTITAHEDRHIK 705

>PMPH_CHLTR (O84880) Probable outer membrane protein pmpH precursor (Polymorphic|
            membrane protein H)
          Length = 1016

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 136  TLPLMLVRHRHRHLKRAGAVAILLRSPPSTLCC*ALSTC*SYDLWRILAHC 288
            +LP+ +V H   H++R         SPPS L    L+     D+WR+  HC
Sbjct: 914  SLPIGIVAHAVSHVRR---------SPPSKL---TLNMGYRPDIWRVTPHC 952

>STRN3_HUMAN (Q13033) Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)|
          Length = 797

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 115 NAVLKHETLPLMLVRHRHRHLK 180
           N V+ H TLP+ +  H  RH+K
Sbjct: 685 NRVVSHPTLPVTITAHEDRHIK 706

>PEPX_LACRH (Q9RDW6) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 797

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 256 ISRLTELNSREYLEDFEAKWQQPLHALDDG 167
           +S L +L +R + +DF+A+  QP H L +G
Sbjct: 144 VSFLDDLANRGFFKDFQAQSSQPAHLLFNG 173

>PEPF_MYCPN (P54125) Oligoendopeptidase F homolog (EC 3.4.24.-)|
          Length = 611

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 316 KSDDPDLCVDNELGFAKDRTISR--LTELNSREYLEDFEAKWQQPLHALDDGGDVVLA 149
           KS+   + VD E    K   + R  L +   ++Y  DFE  W+   H +D     +LA
Sbjct: 93  KSEHALVFVDFEKNLFKHEKVIRAYLQDPALKQYQRDFELVWRNKKHQIDPASQKLLA 150

>MEN1_HUMAN (O00255) Menin|
          Length = 615

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 115 YSFVININPPGSGRNGRNVGFPVSGACNFTVCRDV 11
           +SF+   +P G+  +   V F V GAC     RDV
Sbjct: 144 FSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDV 178

>RLA0_AERPE (Q9Y9W8) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 344

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 3  EVLTSRHTVKLHAPLTGKPTFL 68
          E L S+H V L A LTG PTF+
Sbjct: 29 EELFSKHRVVLFADLTGTPTFV 50

>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1135

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -2

Query: 316  KSDDPDLCVDNE-LGFAKDRTISRLTELNSREYL---EDFEA-KWQQPLHALDDGGDVVL 152
            K +D  + V +E    A+D  +  ++    + YL   E+FE  K Q  +H + DG D+++
Sbjct: 1073 KPEDTQVLVKSEDFAKARDELVPSVSAEELQHYLSVRENFEGGKTQDVMHTVPDGADIII 1132

Query: 151  A 149
            +
Sbjct: 1133 S 1133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,019,818
Number of Sequences: 219361
Number of extensions: 818378
Number of successful extensions: 1662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)