| Clone Name | rbaet07d08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK193328.1| Mus musculus cDNA, clone:Y1G0111N17, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000020576, based on BLAT search Length = 152 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaaatgattgaaatgcaaaca 73 ||||||||||||||||||||| Sbjct: 127 aaaatgattgaaatgcaaaca 147
>gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complete sequence Length = 192026 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 179664 caaacacacaaccaaacaca 179683
>ref|XM_760193.1| Theileria parva strain Muguga hypothetical protein (TP02_0719) partial mRNA Length = 924 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ggtaaacaaaatgattgaaa 65 |||||||||||||||||||| Sbjct: 756 ggtaaacaaaatgattgaaa 737
>gb|AC144713.2| Danio rerio clone CH211-6O1, complete sequence Length = 153992 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 2612 caaacacacaaccaaacaca 2593
>gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, complete sequence Length = 172143 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 67579 caaacacacaaccaaacaca 67560
>emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 in linkage group 16, complete sequence Length = 152728 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 60226 caaacacacaaccaaacaca 60245
>gb|AC113405.2| Homo sapiens chromosome 5 clone RP11-467C9, complete sequence Length = 134319 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 acacacaaccaaacacaagt 90 |||||||||||||||||||| Sbjct: 72047 acacacaaccaaacacaagt 72028
>gb|AC022104.3|AC022104 Homo sapiens chromosome 5 clone CTC-257B12, complete sequence Length = 160703 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 acacacaaccaaacacaagt 90 |||||||||||||||||||| Sbjct: 147209 acacacaaccaaacacaagt 147228
>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence Length = 175575 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 130664 caaacacacaaccaaacaca 130645 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caaacacacaaccaaacaca 87 |||||||||||||||||||| Sbjct: 130608 caaacacacaaccaaacaca 130589
>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence Length = 205272 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aacacacaaccaaacacaa 88 ||||||||||||||||||| Sbjct: 37520 aacacacaaccaaacacaa 37502
>gb|AC149267.1| Solanum demissum chromosome 5 clone PGEC747E24 map MAP_LOC, complete sequence Length = 92340 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aaatgcaaacacacaacca 81 ||||||||||||||||||| Sbjct: 6571 aaatgcaaacacacaacca 6589
>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence Length = 179746 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ttgaaatgcaaacacacaa 78 ||||||||||||||||||| Sbjct: 168951 ttgaaatgcaaacacacaa 168933
>ref|XM_416725.1| PREDICTED: Gallus gallus similar to Biotin--protein ligase (Biotin apo-protein ligase) (LOC418516), mRNA Length = 3004 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 caaacacacaaccaaacac 86 ||||||||||||||||||| Sbjct: 2779 caaacacacaaccaaacac 2761
>gb|AY809656.1| Schistosoma japonicum SJCHGC05943 protein mRNA, partial cds Length = 1781 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 taaacaaaatgattgaaat 66 ||||||||||||||||||| Sbjct: 879 taaacaaaatgattgaaat 861
>gb|AC160931.2| Mus musculus BAC clone RP24-311F12 from chromosome 12, complete sequence Length = 167090 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 acacacaaccaaacacaag 89 ||||||||||||||||||| Sbjct: 78229 acacacaaccaaacacaag 78211
>gb|BC005534.1| Mus musculus cyclin G1, mRNA (cDNA clone MGC:7684 IMAGE:3497034), complete cds Length = 3151 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaaatgattgaaatgcaaa 71 ||||||||||||||||||| Sbjct: 3120 aaaatgattgaaatgcaaa 3138
>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence Length = 210427 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 attgaaatgcaaacacaca 77 ||||||||||||||||||| Sbjct: 186226 attgaaatgcaaacacaca 186208
>gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, complete sequence Length = 211397 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acaaaatgattgaaatgca 69 ||||||||||||||||||| Sbjct: 25300 acaaaatgattgaaatgca 25282
>gb|AC158991.2| Mus musculus BAC clone RP24-488G14 from chromosome 7, complete sequence Length = 210271 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 ttgaaatgcaaacacacaa 78 ||||||||||||||||||| Sbjct: 74952 ttgaaatgcaaacacacaa 74934
>ref|NM_009831.2| Mus musculus cyclin G1 (Ccng1), mRNA Length = 3501 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaaatgattgaaatgcaaa 71 ||||||||||||||||||| Sbjct: 3470 aaaatgattgaaatgcaaa 3488
>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 187738 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 gcaaacacacaaccaaaca 85 ||||||||||||||||||| Sbjct: 130163 gcaaacacacaaccaaaca 130181
>emb|AL450304.33| Human DNA sequence from clone RP11-505O17 on chromosome 1 Contains the 5' end of a gene for a novel protein, a processed pseudogene similar to natural cytotoxicity triggering receptor 1 (NCR1), a processed pseudogene similar to keratin 18 (KRT18), the 5' end of the LAMC1 for laminin, gamma 1 (formerly LAMB2) and CpG island, complete sequence Length = 172837 Score = 38.2 bits (19), Expect = 7.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 63 aaatgcaaacacacaaccaaacacaag 89 |||||||||||||||| || ||||||| Sbjct: 154898 aaatgcaaacacacaaacacacacaag 154872
>emb|AL356131.12| Human DNA sequence from clone RP1-91N13 on chromosome 6 Contains a proteasome subunit alpha type 4 (PROS29) pseudogene, complete sequence Length = 170095 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aacacacaaccaaacacaa 88 ||||||||||||||||||| Sbjct: 88074 aacacacaaccaaacacaa 88092
>emb|AL035688.8|HS173A13 Human DNA sequence from clone RP1-173A13 on chromosome 6 Contains a proteasome component C9 (macropain subunit C9) (PSMA4) pseudogene, complete sequence Length = 148870 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aacacacaaccaaacacaa 88 ||||||||||||||||||| Sbjct: 46317 aacacacaaccaaacacaa 46299
>gb|AY269186.1| Homo sapiens clone cosmid B47c39, complete sequence Length = 38773 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaacacacaaccaaacaca 87 ||||||||||||||||||| Sbjct: 25684 aaacacacaaccaaacaca 25666
>emb|BX004968.20| Zebrafish DNA sequence from clone DKEY-35I13 in linkage group 15, complete sequence Length = 208706 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 atgcaaacacacaaccaaa 83 ||||||||||||||||||| Sbjct: 204772 atgcaaacacacaaccaaa 204754
>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 Length = 349080 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 attgaaatgcaaacacaca 77 ||||||||||||||||||| Sbjct: 292732 attgaaatgcaaacacaca 292750
>emb|AL645546.5| Mouse DNA sequence from clone RP23-124G18 on chromosome 13 Contains the V1ri3, V1ri6, V1rh4, V1rh19 and V1rh21 genes for vomeronasal 1 receptor proteins I3, I6, H4, H19 and H21, a V1rh and a V1ri pseudogene and a fatty acid elongase 2 pseudogene, complete sequence Length = 122517 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 aacaaaatgattgaaatgc 68 ||||||||||||||||||| Sbjct: 82539 aacaaaatgattgaaatgc 82557
>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8, complete sequence Length = 206751 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 tcatttactccacatacca 43 ||||||||||||||||||| Sbjct: 154578 tcatttactccacatacca 154596
>emb|BX914211.5| Zebrafish DNA sequence from clone DKEY-91D10 in linkage group 3, complete sequence Length = 179226 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 66 tgcaaacacacaaccaaacacaa 88 |||||||||||||||||| |||| Sbjct: 94286 tgcaaacacacaaccaaagacaa 94264
>emb|BX511023.8| Zebrafish DNA sequence from clone DKEY-148A12 in linkage group 2, complete sequence Length = 244788 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 attgaaatgcaaacacaca 77 ||||||||||||||||||| Sbjct: 210359 attgaaatgcaaacacaca 210341
>gb|AC016465.8| Homo sapiens, clone RP11-11K9, complete sequence Length = 161082 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 tgaaatgcaaacacacaac 79 ||||||||||||||||||| Sbjct: 49972 tgaaatgcaaacacacaac 49990
>gb|AC008877.9| Homo sapiens chromosome 5 clone CTD-2204B21, complete sequence Length = 163575 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 gcaaacacacaaccaaaca 85 ||||||||||||||||||| Sbjct: 44673 gcaaacacacaaccaaaca 44655
>gb|AC016599.6| Homo sapiens chromosome 5 clone CTD-2054D19, complete sequence Length = 173736 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 gcaaacacacaaccaaaca 85 ||||||||||||||||||| Sbjct: 1726 gcaaacacacaaccaaaca 1708
>gb|AC153886.3| Mus musculus 10 BAC RP23-461H13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 155429 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acaaaatgattgaaatgca 69 ||||||||||||||||||| Sbjct: 45217 acaaaatgattgaaatgca 45199
>gb|AC092458.5| Homo sapiens BAC clone RP13-612N21 from 4, complete sequence Length = 126619 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 49 aaacaaaatgattgaaatgcaaa 71 ||||||||||| ||||||||||| Sbjct: 4710 aaacaaaatgaatgaaatgcaaa 4732
>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence Length = 176379 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 aaacaaaatgattgaaatg 67 ||||||||||||||||||| Sbjct: 154678 aaacaaaatgattgaaatg 154660
>gb|AC012447.8| Homo sapiens BAC clone RP11-204L24 from 2, complete sequence Length = 166305 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 gtaaacaaaatgattgaaa 65 ||||||||||||||||||| Sbjct: 87976 gtaaacaaaatgattgaaa 87958
>dbj|AK197647.1| Mus musculus cDNA, clone:Y1G0125L14, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000020576, based on BLAT search Length = 153 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaaatgattgaaatgcaaa 71 ||||||||||||||||||| Sbjct: 127 aaaatgattgaaatgcaaa 145
>dbj|BS000087.1| Pan troglodytes chromosome 22 clone:RP43-110O22, map 22, complete sequences Length = 156630 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 63 aaatgcaaacacacaaccaaaca 85 ||||||||||||||| ||||||| Sbjct: 82172 aaatgcaaacacacatccaaaca 82194
>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence Length = 237801 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aacacacaaccaaacacaa 88 ||||||||||||||||||| Sbjct: 176189 aacacacaaccaaacacaa 176171
>gb|BC006609.1| Mus musculus cDNA clone IMAGE:3966880, containing frame-shift errors Length = 3385 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 aaaatgattgaaatgcaaa 71 ||||||||||||||||||| Sbjct: 3353 aaaatgattgaaatgcaaa 3371
>emb|AL954313.6| Zebrafish DNA sequence from clone CH211-257J20 in linkage group 11, complete sequence Length = 156381 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 taaggccgtcatttactccacat 39 ||||||| ||||||||||||||| Sbjct: 94103 taaggccatcatttactccacat 94081
>emb|AL929131.5| Zebrafish DNA sequence from clone CH211-286O17, complete sequence Length = 152081 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 atgcaaacacacaaccaaacaca 87 ||||||||||||||||| ||||| Sbjct: 102922 atgcaaacacacaaccatacaca 102900
>emb|AL607084.14| Mouse DNA sequence from clone RP23-272N19 on chromosome 4, complete sequence Length = 113877 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aaacacacaaccaaacaca 87 ||||||||||||||||||| Sbjct: 65749 aaacacacaaccaaacaca 65767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,360,646 Number of Sequences: 3902068 Number of extensions: 1360646 Number of successful extensions: 116111 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116020 Number of HSP's gapped (non-prelim): 91 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)