ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet07a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473556.1| Oryza sativa (japonica cultivar-group), predic... 96 1e-16
2emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4,... 96 1e-16
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
4dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
5dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
6gb|AY106150.1| Zea mays PCO099943 mRNA sequence 92 2e-15
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
9dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
11gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 46 0.092
12ref|NM_115648.3| Arabidopsis thaliana unknown protein AT3G57860 ... 42 1.4
13emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome 5, BA... 42 1.4
14emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BA... 42 1.4
15emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, B... 42 1.4
16gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complet... 42 1.4
17gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, comple... 42 1.4
18dbj|AK221714.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 1.4
19emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chro... 42 1.4
20gb|AF091106.1|AF091106 Arabidopsis thaliana E2 ubiquitin-conjuga... 42 1.4
21gb|U44976.1|ATU44976 Arabidopsis thaliana ubiquitin-conjugating ... 42 1.4
22emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chr... 42 1.4
23gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome... 40 5.7
24emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 ... 40 5.7
25gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, co... 40 5.7
26gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, comp... 40 5.7
27dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, ... 40 5.7
28gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.7
29dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, ... 40 5.7
30dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11,... 40 5.7
31dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08,... 40 5.7
32gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, ... 40 5.7
33dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, ... 40 5.7
34gb|AF236874.1|AF236874 Homo sapiens chromosome 21 map 21q21, BAC... 40 5.7
35emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027 40 5.7
36gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, co... 40 5.7
37dbj|AP000475.4| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 5.7
38dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.7
39emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from... 40 5.7 
>ref|XM_473556.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1941

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                    
Query: 365  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1928 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgg 1873
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>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                     
Query: 365   tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
             ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 93483 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgg 93428
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                        
Query: 365      tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
                ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 28697475 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgg 28697530
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>dbj|AK099906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A04, full
            insert sequence
          Length = 2060

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                    
Query: 365  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgg 1959
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>dbj|AK069684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N01, full
            insert sequence
          Length = 3063

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                    
Query: 365  tccccaagtgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2014 tccccgagtgtccagtatgtctttacaacaaggaggagcttctcccggacgagcgg 1959
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>gb|AY106150.1| Zea mays PCO099943 mRNA sequence
          Length = 1572

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                              
Query: 374  gtccagtatgtcttcacaacaaggaggagcttctcccggacgagcggacc 423
            |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1248 gtccagtatgtcttcacagcaaggaggagcttctcccggacgagcggacc 1199
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 373      tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
                ||||||||| ||||| || || ||||||| ||||||||||||||||||
Sbjct: 27549739 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgg 27549786
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0135D07
          Length = 170587

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 373   tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
             ||||||||| ||||| || || ||||||| ||||||||||||||||||
Sbjct: 29408 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgg 29455
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 373    tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
              ||||||||| ||||| || || ||||||| ||||||||||||||||||
Sbjct: 141461 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgg 141508
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>dbj|AK065315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P05, full
            insert sequence
          Length = 2289

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 373  tgtccagtatgtcttcacaacaaggaggagcttctcccggacgagcgg 420
            ||||||||| ||||| || || ||||||| ||||||||||||||||||
Sbjct: 2059 tgtccagtacgtcttgacgaccaggaggatcttctcccggacgagcgg 2012
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 106     acagcaagaaacataatgaaatctctg 132
               ||||||| |||||||||||||||||||
Sbjct: 2983165 acagcaaaaaacataatgaaatctctg 2983139
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>ref|NM_115648.3| Arabidopsis thaliana unknown protein AT3G57860 mRNA, complete cds
          Length = 1876

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 32   ttaatattcttgggactgattcagt 56
            ||||||||||||| |||||||||||
Sbjct: 1685 ttaatattcttggtactgattcagt 1661
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>emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E22 (ESSA project)
          Length = 96575

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 32   ttaatattcttgggactgattcagt 56
            ||||||||||||| |||||||||||
Sbjct: 3417 ttaatattcttggtactgattcagt 3441
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>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project)
          Length = 87581

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 32    ttaatattcttgggactgattcagt 56
             ||||||||||||| |||||||||||
Sbjct: 85482 ttaatattcttggtactgattcagt 85506
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>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17
          Length = 109016

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    ttaatattcttgggactgattcagt 56
             ||||||||||||| |||||||||||
Sbjct: 23738 ttaatattcttggtactgattcagt 23714
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>gb|AC116644.4| Homo sapiens BAC clone RP11-678J5 from 4, complete sequence
          Length = 75455

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   caagaaacataatgaaatctc 130
             |||||||||||||||||||||
Sbjct: 34152 caagaaacataatgaaatctc 34132
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>gb|AC093607.3| Homo sapiens BAC clone RP11-654J13 from 4, complete sequence
          Length = 143993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   tcaaaatctgtcatatacttg 189
             |||||||||||||||||||||
Sbjct: 43619 tcaaaatctgtcatatacttg 43599
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>dbj|AK221714.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL16-87-M17
          Length = 1854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 32   ttaatattcttgggactgattcagt 56
            ||||||||||||| |||||||||||
Sbjct: 1756 ttaatattcttggtactgattcagt 1780
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>emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chromosome 2, complete
             sequence
          Length = 123748

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   tgtgacatctgcccagtatct 310
             |||||||||||||||||||||
Sbjct: 26271 tgtgacatctgcccagtatct 26291
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>gb|AF091106.1|AF091106 Arabidopsis thaliana E2 ubiquitin-conjugating-like enzyme (Ahus5)
            gene, complete cds
          Length = 1554

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 32   ttaatattcttgggactgattcagt 56
            ||||||||||||| |||||||||||
Sbjct: 1488 ttaatattcttggtactgattcagt 1512
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>gb|U44976.1|ATU44976 Arabidopsis thaliana ubiquitin-conjugating enzyme (Ahus5) mRNA,
           complete cds
          Length = 824

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 32  ttaatattcttgggactgattcagt 56
           ||||||||||||| |||||||||||
Sbjct: 702 ttaatattcttggtactgattcagt 726
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>emb|AL672229.12| Mouse DNA sequence from clone RP23-335A6 on chromosome 17, complete
             sequence
          Length = 187977

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 143   ttggctggctggctgtccttcccat 167
             |||||||||||||||||||| ||||
Sbjct: 48113 ttggctggctggctgtcctttccat 48089
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>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence
          Length = 171426

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ttggctggctggctgtcctt 162
              ||||||||||||||||||||
Sbjct: 154651 ttggctggctggctgtcctt 154632
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>emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3,
             complete sequence
          Length = 122557

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   agcaagataaaacttcaaaa 256
             ||||||||||||||||||||
Sbjct: 66039 agcaagataaaacttcaaaa 66020
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>gb|AC147158.3| Pan troglodytes BAC clone CH251-137M10 from Y, complete sequence
          Length = 167138

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aacataatgaaatctctgtc 134
             ||||||||||||||||||||
Sbjct: 47832 aacataatgaaatctctgtc 47813
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>gb|AC142354.3| Pan troglodytes BAC clone RP43-21M11 from Y, complete sequence
          Length = 163480

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    aacataatgaaatctctgtc 134
              ||||||||||||||||||||
Sbjct: 155852 aacataatgaaatctctgtc 155833
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>dbj|BS000641.4| Pan troglodytes chromosome Y clone: PTB-094I22, complete sequence
          Length = 190308

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aacataatgaaatctctgtc 134
             ||||||||||||||||||||
Sbjct: 98334 aacataatgaaatctctgtc 98353
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 115      aacataatgaaatctctgtc 134
                ||||||||||||||||||||
Sbjct: 17308124 aacataatgaaatctctgtc 17308105
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>dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, map 22, complete
              sequences
          Length = 179346

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tcaattttctcagtttctca 331
              ||||||||||||||||||||
Sbjct: 128801 tcaattttctcagtttctca 128782
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>dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11, map 22, complete
             sequences
          Length = 148593

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tcaattttctcagtttctca 331
             ||||||||||||||||||||
Sbjct: 21631 tcaattttctcagtttctca 21612
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>dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08, map 22, complete
              sequences
          Length = 155118

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tcaattttctcagtttctca 331
              ||||||||||||||||||||
Sbjct: 112865 tcaattttctcagtttctca 112846
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>gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, complete sequence
          Length = 172663

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tcaattttctcagtttctca 331
              ||||||||||||||||||||
Sbjct: 124082 tcaattttctcagtttctca 124063
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>dbj|BS000573.1| Pan troglodytes chromosome Y clone:RP43-021M11, complete sequences
          Length = 163477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  aacataatgaaatctctgtc 134
            ||||||||||||||||||||
Sbjct: 7629 aacataatgaaatctctgtc 7648
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>gb|AF236874.1|AF236874 Homo sapiens chromosome 21 map 21q21, BAC B242B02, complete sequence
          Length = 157270

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tcaattttctcagtttctca 331
             ||||||||||||||||||||
Sbjct: 45885 tcaattttctcagtttctca 45866
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>emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tcaattttctcagtttctca 331
              ||||||||||||||||||||
Sbjct: 191986 tcaattttctcagtttctca 191967
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>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    ttggctggctggctgtcctt 162
              ||||||||||||||||||||
Sbjct: 133060 ttggctggctggctgtcctt 133079
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>dbj|AP000475.4| Homo sapiens genomic DNA, chromosome 21 clone:RP11-44J6, complete
            sequence
          Length = 160762

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcaattttctcagtttctca 331
            ||||||||||||||||||||
Sbjct: 6661 tcaattttctcagtttctca 6642
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>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c,
             complete sequence
          Length = 48081

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tatctgtcaattttctcagt 325
             ||||||||||||||||||||
Sbjct: 11997 tatctgtcaattttctcagt 12016
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>emb|AL121578.1|HSXKSRPXR Homo sapiens chromosome X sequence from 12 cosmids, map Xp21.1 region
             DXS709-SRPX, complete sequence
          Length = 337101

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   gaaatctctgtctgccccat 142
             ||||||||||||||||||||
Sbjct: 85770 gaaatctctgtctgccccat 85789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,681,755
Number of Sequences: 3902068
Number of extensions: 4681755
Number of successful extensions: 102431
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102249
Number of HSP's gapped (non-prelim): 182
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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