ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet07a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009445.1| Triticum aestivum clone wlmk8.pk0008.e8:fis, full insert mRNA sequence Length = 2162 Score = 668 bits (337), Expect = 0.0 Identities = 411/434 (94%), Gaps = 10/434 (2%) Strand = Plus / Minus Query: 2 gactcccaaaacccagttgctattgatgtttataaggtgtgctcaatactctttcgacaa 61 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 2134 gactcccaaaacccagttgctattgatgcttataaggtgtgctccatactctttcgacaa 2075 Query: 62 gttaatacagcacacaaacgcttctgacaaaaaccgacacaaccgacaaccgtgaatacc 121 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 2074 gttaatacagcacagaaacgcatctgacaaaaaccgacacaaccgacaaccgtgaaaacc 2015 Query: 122 ctatctttcaaggttctttttacctcacacagatatatcaatataaatttggttcaagct 181 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2014 ctatctttcaaggttctttttacctcacacagatatatcaatataattttggttcaagct 1955 Query: 182 atataggaggcaaaacccaactctcccgacaacacatgcggctctggacgtcctctccct 241 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1954 atataggaggcaaaacccgactctcccgacaacacatgcggctctggacgtcctct---- 1899 Query: 242 cagggtgaggcagaacccaaatgatccgaccggttgaccttgaagactgaccgttgacca 301 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1898 ---ggtgaggcagaacccaaatgatccgaccggttgaccttgaagactgaccattgacca 1842 Query: 302 agctgcaccactgacgatgcaagcccaaggactgaccctgcttagactgacttgacgact 361 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1841 agctgcaccaccgacgatgcaa-cccaaggactgaccctgcttagactgacttgacgact 1783 Query: 362 tcttgagaccagaccgacaggacccaacaatgactcaaacgacaaacacctcccccaaat 421 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1782 gcttgagaccagaccgacaggacccaacaatgactcaaacgacaa--gacttccccaaat 1725 Query: 422 ctgactagtcccaa 435 |||||||||||||| Sbjct: 1724 ctgactagtcccaa 1711
>gb|AY103821.1| Zea mays PCO084551 mRNA sequence Length = 2318 Score = 85.7 bits (43), Expect = 1e-13 Identities = 105/124 (84%), Gaps = 5/124 (4%) Strand = Plus / Minus Query: 257 cccaaatgatccgaccggttgaccttgaagactgaccgttgaccaagctgcaccactgac 316 |||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||| Sbjct: 1932 cccaaatgatccaaccggctgaccttcaagactgaccaccgaccaagctgcaccactggt 1873 Query: 317 gatgcaagcccaaggactgaccctgctta----gactgacttgacgacttcttgagacca 372 ||||| |||||||||||||||||||| | ||||||| |||| ||| | |||||||| Sbjct: 1872 aatgca-gcccaaggactgaccctgctgactgggactgacatgacaactccctgagacca 1814 Query: 373 gacc 376 |||| Sbjct: 1813 gacc 1810 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/34 (94%), Gaps = 2/34 (5%) Strand = Plus / Minus Query: 183 tataggaggcaaaacccaactctcccgacaacac 216 ||||||||||||||||||| ||||||||||||| Sbjct: 2019 tataggaggcaaaacccaa--ctcccgacaacac 1988 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 120 ccctatctttcaaggttctttttacc 145 ||||||||||||||||||||| |||| Sbjct: 2077 ccctatctttcaaggttctttctacc 2052
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Plus Query: 9 aaaacccagttgctatt-gatgtttataaggtgtgctcaatactctttcgacaagttaat 67 ||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||| Sbjct: 68791 aaaacccagttgctatttgatgtttataagttgtgc-caatactcttctgacatgttaat 68849 Query: 68 acagcaca 75 |||||||| Sbjct: 68850 acagcaca 68857 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/104 (83%), Gaps = 2/104 (1%) Strand = Plus / Plus Query: 346 gactgacttgacgacttcttgagaccagaccgacaggacccaacaatgactcaaacgaca 405 ||||||| | |||||| | ||||||||||||| ||||||||||| | ||||| ||||||| Sbjct: 69134 gactgacattacgactgcctgagaccagaccgccaggacccaaccaagactccaacgaca 69193 Query: 406 aacacctcccccaaatctgactagtcccaaagcagtagctaagg 449 | ||||||||| ||||||||| ||||| ||||||||||| Sbjct: 69194 a--gactcccccaactctgactagccccaagcaagtagctaagg 69235 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 276 tgaccttgaagactgaccgttgaccaagctgcaccact---gacgatgcaagcccaagga 332 ||||||| |||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct: 69070 tgaccttcaagactgaccactgaccaagctgcaccactggcgatgatgcaagcccaagga 69129 Query: 333 ctg 335 ||| Sbjct: 69130 ctg 69132 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/132 (83%), Gaps = 14/132 (10%) Strand = Plus / Plus Query: 119 accctatctttcaaggttctttttacctcaca-cagatatatcaatataaatttggttca 177 |||||||||||||||||||||||||||||| | ||||| || ||||||| || |||| Sbjct: 68894 accctatctttcaaggttctttttacctcaaaacagatg-at-aatataa--ttcattca 68949 Query: 178 agctatataggaggcaaaacccaa---------ctctcccgacaacacatgcggctctgg 228 |||||||||||||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 68950 tgctatataggaggcaaaagccaactggtaactctctcccgacaacacctgcggctctgg 69009 Query: 229 acgtcctctccc 240 ||| |||||||| Sbjct: 69010 acgccctctccc 69021
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Plus Query: 9 aaaacccagttgctatt-gatgtttataaggtgtgctcaatactctttcgacaagttaat 67 ||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||| Sbjct: 3191074 aaaacccagttgctatttgatgtttataagttgtgc-caatactcttctgacatgttaat 3191132 Query: 68 acagcaca 75 |||||||| Sbjct: 3191133 acagcaca 3191140 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/104 (83%), Gaps = 2/104 (1%) Strand = Plus / Plus Query: 346 gactgacttgacgacttcttgagaccagaccgacaggacccaacaatgactcaaacgaca 405 ||||||| | |||||| | ||||||||||||| ||||||||||| | ||||| ||||||| Sbjct: 3191417 gactgacattacgactgcctgagaccagaccgccaggacccaaccaagactccaacgaca 3191476 Query: 406 aacacctcccccaaatctgactagtcccaaagcagtagctaagg 449 | ||||||||| ||||||||| ||||| ||||||||||| Sbjct: 3191477 a--gactcccccaactctgactagccccaagcaagtagctaagg 3191518 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 276 tgaccttgaagactgaccgttgaccaagctgcaccact---gacgatgcaagcccaagga 332 ||||||| |||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct: 3191353 tgaccttcaagactgaccactgaccaagctgcaccactggcgatgatgcaagcccaagga 3191412 Query: 333 ctg 335 ||| Sbjct: 3191413 ctg 3191415 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/132 (83%), Gaps = 14/132 (10%) Strand = Plus / Plus Query: 119 accctatctttcaaggttctttttacctcaca-cagatatatcaatataaatttggttca 177 |||||||||||||||||||||||||||||| | ||||| || ||||||| || |||| Sbjct: 3191177 accctatctttcaaggttctttttacctcaaaacagatg-at-aatataa--ttcattca 3191232 Query: 178 agctatataggaggcaaaacccaa---------ctctcccgacaacacatgcggctctgg 228 |||||||||||||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 3191233 tgctatataggaggcaaaagccaactggtaactctctcccgacaacacctgcggctctgg 3191292 Query: 229 acgtcctctccc 240 ||| |||||||| Sbjct: 3191293 acgccctctccc 3191304
>dbj|AK120498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O08, full insert sequence Length = 687 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 9 aaaacccagttgctatt-gatgtttataaggtgtgctcaatactctttcgacaagttaat 67 ||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||| Sbjct: 299 aaaacccagttgctatttgatgtttataagttgtgc-caatactcttctgacatgttaat 241 Query: 68 acagcaca 75 |||||||| Sbjct: 240 acagcaca 233 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/132 (83%), Gaps = 14/132 (10%) Strand = Plus / Minus Query: 119 accctatctttcaaggttctttttacctcaca-cagatatatcaatataaatttggttca 177 |||||||||||||||||||||||||||||| | ||||| || ||||||| || |||| Sbjct: 196 accctatctttcaaggttctttttacctcaaaacagatg-at-aatataa--ttcattca 141 Query: 178 agctatataggaggcaaaacccaa---------ctctcccgacaacacatgcggctctgg 228 |||||||||||||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 140 tgctatataggaggcaaaagccaactggtaactctctcccgacaacacctgcggctctgg 81 Query: 229 acgtcctctccc 240 ||| |||||||| Sbjct: 80 acgccctctccc 69
>dbj|AK100133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010D07, full insert sequence Length = 2275 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 9 aaaacccagttgctatt-gatgtttataaggtgtgctcaatactctttcgacaagttaat 67 ||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||| Sbjct: 2213 aaaacccagttgctatttgatgtttataagttgtgc-caatactcttctgacatgttaat 2155 Query: 68 acagcaca 75 |||||||| Sbjct: 2154 acagcaca 2147 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/132 (83%), Gaps = 14/132 (10%) Strand = Plus / Minus Query: 119 accctatctttcaaggttctttttacctcaca-cagatatatcaatataaatttggttca 177 |||||||||||||||||||||||||||||| | ||||| || ||||||| || |||| Sbjct: 2110 accctatctttcaaggttctttttacctcaaaacagatg-at-aatataa--ttcattca 2055 Query: 178 agctatataggaggcaaaacccaa---------ctctcccgacaacacatgcggctctgg 228 |||||||||||||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 2054 tgctatataggaggcaaaagccaactggtaactctctcccgacaacacctgcggctctgg 1995 Query: 229 acgtcctctccc 240 ||| |||||||| Sbjct: 1994 acgccctctccc 1983 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 276 tgaccttgaagactgaccgttgaccaagctgcaccact---gacgatgcaagcccaagga 332 ||||||| |||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct: 1934 tgaccttcaagactgaccactgaccaagctgcaccactggcgatgatgcaagcccaagga 1875 Query: 333 ctg 335 ||| Sbjct: 1874 ctg 1872 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/104 (83%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 346 gactgacttgacgacttcttgagaccagaccgacaggacccaacaatgactcaaacgaca 405 ||||||| | |||||| | ||||||||||||| ||||||||||| | ||||| ||||||| Sbjct: 1870 gactgacattacgactgcctgagaccagaccgccaggacccaaccaagactccaacgaca 1811 Query: 406 aacacctcccccaaatctgactagtcccaaagcagtagctaagg 449 | ||||||||| ||||||||| ||||| ||||||||||| Sbjct: 1810 a--gactcccccaactctgactagccccaagcaagtagctaagg 1769
>dbj|AB024311.1| Oryza sativa (japonica cultivar-group) mRNA for importin alpha 1b, complete cds Length = 2632 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/68 (91%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 9 aaaacccagttgctatt-gatgtttataaggtgtgctcaatactctttcgacaagttaat 67 ||||||||||||||||| |||||||||||| ||||| |||||||||| |||| |||||| Sbjct: 2225 aaaacccagttgctatttgatgtttataagttgtgc-caatactcttctgacatgttaat 2167 Query: 68 acagcaca 75 |||||||| Sbjct: 2166 acagcaca 2159 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/132 (83%), Gaps = 14/132 (10%) Strand = Plus / Minus Query: 119 accctatctttcaaggttctttttacctcaca-cagatatatcaatataaatttggttca 177 |||||||||||||||||||||||||||||| | ||||| || ||||||| || |||| Sbjct: 2122 accctatctttcaaggttctttttacctcaaaacagatg-at-aatataa--ttcattca 2067 Query: 178 agctatataggaggcaaaacccaa---------ctctcccgacaacacatgcggctctgg 228 |||||||||||||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 2066 tgctatataggaggcaaaagccaactggtaactctctcccgacaacacctgcggctctgg 2007 Query: 229 acgtcctctccc 240 ||| |||||||| Sbjct: 2006 acgccctctccc 1995 Score = 65.9 bits (33), Expect = 1e-07 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 276 tgaccttgaagactgaccgttgaccaagctgcaccact---gacgatgcaagcccaagga 332 ||||||| |||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct: 1946 tgaccttcaagactgaccactgaccaagctgcaccactggcgatgatgcaagcccaagga 1887 Query: 333 ctg 335 ||| Sbjct: 1886 ctg 1884 Score = 65.9 bits (33), Expect = 1e-07 Identities = 87/104 (83%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 346 gactgacttgacgacttcttgagaccagaccgacaggacccaacaatgactcaaacgaca 405 ||||||| | |||||| | ||||||||||||| ||||||||||| | ||||| ||||||| Sbjct: 1882 gactgacattacgactgcctgagaccagaccgccaggacccaaccaagactccaacgaca 1823 Query: 406 aacacctcccccaaatctgactagtcccaaagcagtagctaagg 449 | ||||||||| ||||||||| ||||| ||||||||||| Sbjct: 1822 a--gactcccccaactctgactagccccaagcaagtagctaagg 1781
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 cacacagatatatcaatataaa 168 |||||||||||||||||||||| Sbjct: 42735 cacacagatatatcaatataaa 42714
>gb|AC009223.2| Homo sapiens BAC clone RP11-24K2 from 2, complete sequence Length = 182144 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 tttacctcacacagatatatc 160 ||||||||||||||||||||| Sbjct: 43235 tttacctcacacagatatatc 43215
>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence Length = 179548 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 tctccctcagggtgaggcaga 255 ||||||||||||||||||||| Sbjct: 73271 tctccctcagggtgaggcaga 73291
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tttttacctcacacagatat 157 |||||||||||||||||||| Sbjct: 49511 tttttacctcacacagatat 49530
>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence Length = 122694 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tattgatgtttataaggtgt 41 |||||||||||||||||||| Sbjct: 38498 tattgatgtttataaggtgt 38479
>emb|AL109742.12|HSJ542O18 Human DNA sequence from clone RP4-542O18 on chromosome 1p32.3-34.1 Contains GSSs, complete sequence Length = 101453 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ccaaggactgaccctgctta 345 |||||||||||||||||||| Sbjct: 74481 ccaaggactgaccctgctta 74462
>emb|AL512647.14| Mouse DNA sequence from clone RP23-47A2 on chromosome 13 Contains part of a novel gene (6620401C13Rik), complete sequence Length = 199848 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gacaaacacctcccccaaat 421 |||||||||||||||||||| Sbjct: 139469 gacaaacacctcccccaaat 139488
>gb|AC072031.18| Homo sapiens 3 BAC RP11-392N12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96901 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 cagttgctattgatgtttat 34 |||||||||||||||||||| Sbjct: 56831 cagttgctattgatgtttat 56812
>emb|AL592062.11| Zebrafish DNA sequence from clone XX-6CSE, complete sequence Length = 106778 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 atatatcaatataaatttgg 173 |||||||||||||||||||| Sbjct: 5943 atatatcaatataaatttgg 5962 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,460,232 Number of Sequences: 3902068 Number of extensions: 3460232 Number of successful extensions: 64285 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64189 Number of HSP's gapped (non-prelim): 76 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
