>MDM2_BRARE (O42354) Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding|
           protein Mdm2) (Double minute 2 protein)
          Length = 445

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 266 TCIHPLEVCVLADARGCLYPSTYVRTCHFSNYYCCFGCATKKKTR 132
           TC+ P  +C      GC+    + RT H      C+ CA K K R
Sbjct: 387 TCLEPCVICQSRPKNGCI---VHGRTGHL---MACYTCAKKLKNR 425

>RINI_MOUSE (Q91VI7) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor|
           1)
          Length = 456

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 221 GCLYPSTYVRTCHFSNYYCCFGCATKKKTRTS*RCELQKHSVILSVPTVYSLC 63
           GC   S +++TC  +   C + C+   K+R+    ELQ  S  L    V  LC
Sbjct: 307 GCQLESLWIKTCSLTAASCPYFCSVLTKSRS--LLELQMSSNPLGDEGVQELC 357

>ETFA_PONPY (Q5RC31) Electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 333

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 251 LEVCVLADARGCLYPSTYVRTCHFSNYYCCFGCATKKK 138
           LEV  ++D      P T+VRT +  N  C   C  K K
Sbjct: 127 LEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVK 164

>ETFA_MACFA (Q8HXY0) Electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 333

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 251 LEVCVLADARGCLYPSTYVRTCHFSNYYCCFGCATKKK 138
           LEV  ++D      P T+VRT +  N  C   C  K K
Sbjct: 127 LEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVK 164

>ETFA_HUMAN (P13804) Electron transfer flavoprotein alpha-subunit,|
           mitochondrial precursor (Alpha-ETF)
          Length = 333

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 251 LEVCVLADARGCLYPSTYVRTCHFSNYYCCFGCATKKK 138
           LEV  ++D      P T+VRT +  N  C   C  K K
Sbjct: 127 LEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVK 164

>RBS_CHLMO (P17537) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 168

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 281 QLQEWTCIHPLEVCVLADARGCLYPSTYVRTCHFSN--YYCCFGCATKKKTRTS*RCELQ 108
           +L  + C  P +V     A    +P+ Y+R   F N     C G   ++    +  C L+
Sbjct: 105 KLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRPRNAAEYCPLE 164

Query: 107 KHSV 96
           K SV
Sbjct: 165 KRSV 168

>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 3462

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 76   CIAFVFELCVYMDRKLGENLP 14
            C +FVF+   Y+ +KL ENLP
Sbjct: 1232 CRSFVFQTKFYLSKKLFENLP 1252

>RECF_RHIME (P56903) DNA replication and repair protein recF|
          Length = 374

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 182 NGTYVRTY*GTNTHVHQLAHTPPMDGCMSTPAA 280
           NGT  RT      H+  L  TP MDG  + P+A
Sbjct: 106 NGTAARTVDELTDHLRVLWLTPAMDGLFTGPSA 138

>YAJB_SCHPO (Q09910) Hypothetical protein C30D11.11 in chromosome I|
          Length = 442

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 124 QLVRVFFLVAHPKQQ**LLKWHVRTYVLGYKHPRASA 234
           ++VR+FFL++  K     + WH  + +  YKH R +A
Sbjct: 243 RIVRIFFLLSAMKCLGCSVIWHTFSSLSNYKHMRCAA 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,898,432
Number of Sequences: 219361
Number of extensions: 1006031
Number of successful extensions: 2581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2578
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)