ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet06d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S27A4_MACFA (Q4R3Y4) Long-chain fatty acid transport protein 4 (... 29 3.3
2S27A4_HUMAN (Q6P1M0) Long-chain fatty acid transport protein 4 (... 29 3.3
3EDNRB_PIG (P35463) Endothelin B receptor precursor (ET-B) (Endot... 28 5.6
4S27A4_PONPY (Q5RDY4) Long-chain fatty acid transport protein 4 (... 28 5.6
5CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (E... 28 5.6
6YJES_ECOLI (P39288) Putative electron transport protein yjeS 27 9.6
7UCRI_CHRVI (O31214) Ubiquinol-cytochrome c reductase iron-sulfur... 27 9.6

>S27A4_MACFA (Q4R3Y4) Long-chain fatty acid transport protein 4 (EC 6.2.1.-)|
           (Fatty acid transport protein 4) (FATP-4) (Solute
           carrier family 27 member 4)
          Length = 643

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 299 HLDPFRASAPLRLKTCQERRFSRKIF 222
           HLDP    AP  L +C ++ F+ K+F
Sbjct: 217 HLDPLLEDAPKHLPSCPDKGFTDKLF 242



to top

>S27A4_HUMAN (Q6P1M0) Long-chain fatty acid transport protein 4 (EC 6.2.1.-)|
           (Fatty acid transport protein 4) (FATP-4) (Solute
           carrier family 27 member 4)
          Length = 643

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 299 HLDPFRASAPLRLKTCQERRFSRKIF 222
           HLDP    AP  L +C ++ F+ K+F
Sbjct: 217 HLDPLLKDAPKHLPSCPDKGFTDKLF 242



to top

>EDNRB_PIG (P35463) Endothelin B receptor precursor (ET-B) (Endothelin|
           receptor Non-selective type)
          Length = 443

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 84  PKKMEFTGTASG*PARLLTPPPFE 155
           P +M   G  +G PAR LTPPP E
Sbjct: 69  PPQMPKGGRMAGPPARTLTPPPCE 92



to top

>S27A4_PONPY (Q5RDY4) Long-chain fatty acid transport protein 4 (EC 6.2.1.-)|
           (Fatty acid transport protein 4) (FATP-4) (Solute
           carrier family 27 member 4)
          Length = 643

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 299 HLDPFRASAPLRLKTCQERRFSRKIF 222
           HLDP    AP  L  C ++ F+ K+F
Sbjct: 217 HLDPLLKDAPKHLPICPDKGFTDKLF 242



to top

>CAHC_SPIOL (P16016) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)|
           (Carbonate dehydratase)
          Length = 319

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 178 KVEPLTA--HSKGGGVSNLAGYPEAVPVNSIFFGHLQKTSRSSQHLMALYQGN 26
           KVE +    HS  GG+  L  +P+A P  + F     K    ++H +    GN
Sbjct: 201 KVENIVVIGHSACGGIKGLMSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGN 253



to top

>YJES_ECOLI (P39288) Putative electron transport protein yjeS|
          Length = 379

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
 Frame = +3

Query: 54  CDDLLVFCRWPKKMEFTGTASG*PARLLTPPP----FEWAVRGSTLNTYSSNTPKIIDLR 221
           CDD  + C W +  + T      P + L  P     F W+       T  S   +I  LR
Sbjct: 246 CDDCQLICPWNRYSQLTTEEDFSPRKPLHAPELIELFAWSEEKFLKVTEGSAIRRIGHLR 305

Query: 222 ---------EDLPRKPPFLTCFQSQRG*GPKRVQMKTWMKCHQIHR 332
                     + P     LT  +S++G  P   +   W    QI R
Sbjct: 306 WLRNIAVALGNAPWDETILTALESRKGEHPLLDEHIAWAIAQQIER 351



to top

>UCRI_CHRVI (O31214) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC|
           1.10.2.2) (Rieske iron-sulfur protein) (RISP)
          Length = 207

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 156 WAVRGST--LNTYSSNTPKIIDLREDLPRKPPF 248
           W V  S+  L   SSN PK++D   ++P++P +
Sbjct: 83  WVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDY 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,787,215
Number of Sequences: 219361
Number of extensions: 1042069
Number of successful extensions: 2099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2099
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top