ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet06d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMSR2_CAEEL (Q9TYV2) Sphingomyelin synthase-related 2 28 7.5
2CYB_TRYBB (P00164) Cytochrome b 27 9.8
3CYB_LEITA (P14548) Cytochrome b 27 9.8

>SMSR2_CAEEL (Q9TYV2) Sphingomyelin synthase-related 2|
          Length = 381

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 276 LLVILIFPVMLMITRCFTWIVIRRV 202
           ++++LI  +++M T    WIVIRRV
Sbjct: 161 MMILLISALLVMFTHQHRWIVIRRV 185



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>CYB_TRYBB (P00164) Cytochrome b|
          Length = 363

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 276 LLVILIFPVMLMITRCFTWIVIRRVEL 196
           L+VIL+F + L I  C  W V  R  L
Sbjct: 288 LMVILLFSLFLFILNCILWFVYCRSSL 314



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>CYB_LEITA (P14548) Cytochrome b|
          Length = 371

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 276 LLVILIFPVMLMITRCFTWIVIRRVEL 196
           L+VIL+F + L I  C  W V  R  L
Sbjct: 296 LMVILLFSLFLFILNCILWFVYCRSSL 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,476,702
Number of Sequences: 219361
Number of extensions: 727296
Number of successful extensions: 1467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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