ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet06d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016823.1| Zea mays clone Contig656 mRNA sequence Length = 1443 Score = 137 bits (69), Expect = 2e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 145 gtctggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcg 204 |||||||| || ||||||||||||||||| ||||| || || || ||||| ||||||||| Sbjct: 1072 gtctggaacaggtcttggaggtcgattatgtcagcaaggacgccggcggcagtggtgtcg 1013 Query: 205 tttccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatc 264 || || |||| ||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 1012 ttgccagctcttgcgccctggatcaccagaggggagctctgataacatctgctgtatatc 953 Query: 265 tccaccacattgtcact 281 || |||||||||||||| Sbjct: 952 tcgaccacattgtcact 936
>dbj|AK071434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098E10, full insert sequence Length = 1397 Score = 115 bits (58), Expect = 8e-23 Identities = 115/134 (85%) Strand = Plus / Minus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1229 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1170 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1169 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1110 Query: 268 accacattgtcact 281 |||||||||||||| Sbjct: 1109 accacattgtcact 1096
>dbj|AK062006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D12, full insert sequence Length = 1396 Score = 115 bits (58), Expect = 8e-23 Identities = 115/134 (85%) Strand = Plus / Minus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1203 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1144 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1143 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1084 Query: 268 accacattgtcact 281 |||||||||||||| Sbjct: 1083 accacattgtcact 1070
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Minus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 59724 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 59665 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 59664 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 59605 Query: 268 acc 270 ||| Sbjct: 59604 acc 59602
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1215905 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1215964 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1215965 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1216024 Query: 268 acc 270 ||| Sbjct: 1216025 acc 1216027
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1330891 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1330950 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1330951 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1331010 Query: 268 acc 270 ||| Sbjct: 1331011 acc 1331013
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1328612 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1328671 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1328672 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1328731 Query: 268 acc 270 ||| Sbjct: 1328732 acc 1328734
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Plus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 1215905 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 1215964 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 1215965 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 1216024 Query: 268 acc 270 ||| Sbjct: 1216025 acc 1216027
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 93.7 bits (47), Expect = 3e-16 Identities = 104/123 (84%) Strand = Plus / Minus Query: 148 tggaaaagatcttggaggtcgattatatcagcgagaactcctgcggcggtggtgtcgttt 207 ||||| ||||| ||||| || | ||| ||||| |||||||| || || ||||| || || Sbjct: 76877 tggaagagatcctggagatcaagtatgtcagcaagaactccagctgcagtggtatcattg 76818 Query: 208 ccggctcctgcaccctggatcaccagcggggagctctcgtagcatctgctgtatatctcc 267 || ||||| || ||||| |||||||| |||| |||||||||||||||||||||||||||| Sbjct: 76817 ccagctccagcgccctgaatcaccagaggggcgctctcgtagcatctgctgtatatctcc 76758 Query: 268 acc 270 ||| Sbjct: 76757 acc 76755
>gb|AY352822.1| Tropidolaemus wagleri isolate B311 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial Length = 645 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cagcagccaaacagaaccaa 30 |||||||||||||||||||| Sbjct: 588 cagcagccaaacagaaccaa 607
>gb|AY437341.1| Drosophila straubae isolate st6.1 mitochondrial assembly regulatory factor (Marf) gene, partial cds; nuclear gene for mitochondrial product Length = 546 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 caaatcaacagcagccaaacagaa 26 |||| ||||||||||||||||||| Sbjct: 360 caaagcaacagcagccaaacagaa 337
>gb|AY223625.1| Tropidolaemus wagleri specimen-voucher CLP 141 NADH dehydrogenase subunit 4 gene, partial cds; mitochondrial gene for mitochondrial product Length = 693 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cagcagccaaacagaaccaa 30 |||||||||||||||||||| Sbjct: 594 cagcagccaaacagaaccaa 613
>emb|BX537277.15| Zebrafish DNA sequence from clone DKEY-45D16 in linkage group 2, complete sequence Length = 263014 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aatcacgctcttgtctggaa 152 |||||||||||||||||||| Sbjct: 87301 aatcacgctcttgtctggaa 87282
>gb|AC064802.4| Homo sapiens chromosome 8, clone RP11-267L5, complete sequence Length = 181079 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atcaacagcagccaaacaga 25 |||||||||||||||||||| Sbjct: 165224 atcaacagcagccaaacaga 165243
>emb|AL954184.14| Zebrafish DNA sequence from clone CH211-259A21 in linkage group 14, complete sequence Length = 165277 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 cagccaaacagaaccaaaaatgtt 37 |||||||||||||| ||||||||| Sbjct: 78982 cagccaaacagaacaaaaaatgtt 78959
>dbj|AP005623.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1311A1, complete sequence Length = 187346 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 atcaacagcagccaaacaga 25 |||||||||||||||||||| Sbjct: 130798 atcaacagcagccaaacaga 130779
>gb|U41896.1|TWU41896 Tropidolaemus wagleri NADH dehydrogenase subunit 4 (ND4) gene, 3' region, mitochondrial gene encoding mitochondrial protein, partial cds Length = 694 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cagcagccaaacagaaccaa 30 |||||||||||||||||||| Sbjct: 595 cagcagccaaacagaaccaa 614
>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete sequence Length = 91481 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agcagccaaacagaaccaaa 31 |||||||||||||||||||| Sbjct: 80531 agcagccaaacagaaccaaa 80550 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,594,736 Number of Sequences: 3902068 Number of extensions: 2594736 Number of successful extensions: 46976 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46867 Number of HSP's gapped (non-prelim): 109 length of query: 281 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 259 effective length of database: 17,147,199,772 effective search space: 4441124740948 effective search space used: 4441124740948 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
