ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet06d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TUSD_PASMU (Q9CL89) Sulfurtransferase tusD homolog (EC 2.8.1.-) 30 2.1
2SPHS_SYNP7 (P39664) Sensor protein sphS (EC 2.7.13.3) 28 4.7
3NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p... 28 6.2

>TUSD_PASMU (Q9CL89) Sulfurtransferase tusD homolog (EC 2.8.1.-)|
          Length = 126

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 192 WLRPASDEYFQRHHEQRRAPDRHVP 118
           +L PASDE+  +H  QR A D HVP
Sbjct: 50  FLYPASDEFNLQHAWQRLAQDYHVP 74



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>SPHS_SYNP7 (P39664) Sensor protein sphS (EC 2.7.13.3)|
          Length = 413

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 150 RGGVESIRPKQAVASSPAEGAGAADNRQLPDA 245
           RG    +RP  A +SSP  G G A  RQ+ +A
Sbjct: 341 RGDPSRVRPAAASSSSPGSGLGLAIARQVVEA 372



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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 252  PRQRQGAAGCRR-HRRLPRGCWLRPASDEYFQRHHEQRRAPDRHVPKRVGAARSYVDLS 79
            P +R+   GC R H   PR     PA+  +  RH  +R A     P     +RS  DLS
Sbjct: 1207 PPRRRARCGCPRPHPHRPRASHRAPAAAPHHHRH--RRAAGGWDFPPPAPTSRSLEDLS 1263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,128,502
Number of Sequences: 219361
Number of extensions: 478860
Number of successful extensions: 1749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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