ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet06d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome... 105 7e-20
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
3dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 7e-20
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 105 7e-20
5gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome... 54 2e-04
6dbj|AK060077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
7gb|AC159030.2| Pan troglodytes BAC clone CH251-399F13 from chrom... 46 0.056
8emb|AL132796.4|CNS01DTL Human chromosome 14 DNA sequence BAC R-1... 46 0.056
9dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.22
10gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosom... 42 0.87
11gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complet... 42 0.87
12gb|CP000264.1| Jannaschia sp. CCS1, complete genome 42 0.87
13gb|AC007481.6|AC007481 Homo sapiens chromosome 8, clone RP11-50A... 42 0.87
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.87
15gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 3.4
16ref|XM_482075.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
17ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative... 40 3.4
18ref|XM_476383.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
19ref|XM_476382.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
20gb|AF157706.1| Human herpesvirus 6B strain Z29, complete genome 40 3.4
21gb|U92288.1|HHU92288 Human herpesvirus 6 serotype B putative maj... 40 3.4
22gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
23gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete... 40 3.4
24emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.4
25gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 3.4
26gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 3.4
27emb|BX539324.15| Zebrafish DNA sequence from clone DKEY-225G6 in... 40 3.4
28gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 3.4
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
32gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence 40 3.4
33gb|AC105419.2| Homo sapiens BAC clone RP11-502O9 from 2, complet... 40 3.4
34dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.4
35gb|AF274853.3| Homo sapiens chromosome X clone RP5-892C22 map q2... 40 3.4
36gb|AC079246.2| Homo sapiens BAC clone CTD-2002G20 from 2, comple... 40 3.4
37gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 40 3.4
38dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 3.4
39dbj|AB021506.1| Human herpesvirus 6B DNA, complete genome, strai... 40 3.4
40dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
41dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
42dbj|AK108186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
43dbj|AK065027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
44dbj|AK062751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
45gb|AY107059.1| Zea mays PCO097556 mRNA sequence 40 3.4
46emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 ... 40 3.4
47gb|AY910577.1| Homo sapiens ATP-binding cassette, sub-family B (... 40 3.4
48gb|AC155895.2| Medicago truncatula chromosome 2 BAC clone mth2-8... 40 3.4
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
50emb|Z68880.1|CET14G10 Caenorhabditis elegans Cosmid T14G10, comp... 40 3.4
51emb|AL672127.9| Mouse DNA sequence from clone RP23-370O18 on chr... 40 3.4 
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04,
              complete sequence
          Length = 164882

 Score =  105 bits (53), Expect = 7e-20
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                          
Query: 108    ctacacgtttaggtacatgtcgatctggagcacggcgttgttcgtggtggcgttgaaagt 167
              ||||||| | ||||||| ||||||||| || ||||||||||| |||||||||||||| | 
Sbjct: 129199 ctacacgctgaggtacaagtcgatctgcaggacggcgttgttggtggtggcgttgaagga 129140

                                                                          
Query: 168    attcgtccgaagcaggccgtagccagcagccccgcggaaggcgccggtgccgccgacaac 227
               | |||||  || |||||||| || || || |||||||   |||||| ||||||||| ||
Sbjct: 129139 gtgcgtcctgaggaggccgtacccggcggcgccgcggagcacgccggcgccgccgaccac 129080

                                                   
Query: 228    cggcagctccctgacgctgtcgaggatggcgtccctg 264
              |||||||||||| ||   |||||||||||||||||||
Sbjct: 129079 cggcagctccctcacctcgtcgaggatggcgtccctg 129043
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  105 bits (53), Expect = 7e-20
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                           
Query: 108     ctacacgtttaggtacatgtcgatctggagcacggcgttgttcgtggtggcgttgaaagt 167
               ||||||| | ||||||| ||||||||| || ||||||||||| |||||||||||||| | 
Sbjct: 5919315 ctacacgctgaggtacaagtcgatctgcaggacggcgttgttggtggtggcgttgaagga 5919256

                                                                           
Query: 168     attcgtccgaagcaggccgtagccagcagccccgcggaaggcgccggtgccgccgacaac 227
                | |||||  || |||||||| || || || |||||||   |||||| ||||||||| ||
Sbjct: 5919255 gtgcgtcctgaggaggccgtacccggcggcgccgcggagcacgccggcgccgccgaccac 5919196

                                                    
Query: 228     cggcagctccctgacgctgtcgaggatggcgtccctg 264
               |||||||||||| ||   |||||||||||||||||||
Sbjct: 5919195 cggcagctccctcacctcgtcgaggatggcgtccctg 5919159



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 201     gcggaaggcgccggtgccgccgacaaccggcagctccctgacg 243
               |||||||||||||||||||||||  ||||||| ||||| ||||
Sbjct: 3975738 gcggaaggcgccggtgccgccgatcaccggcatctcccggacg 3975696



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 201     gcggaaggcgccggtgccgccgac 224
               |||||| |||||||||||||||||
Sbjct: 3914546 gcggaacgcgccggtgccgccgac 3914569
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>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full
           insert sequence
          Length = 885

 Score =  105 bits (53), Expect = 7e-20
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                       
Query: 108 ctacacgtttaggtacatgtcgatctggagcacggcgttgttcgtggtggcgttgaaagt 167
           ||||||| | ||||||| ||||||||| || ||||||||||| |||||||||||||| | 
Sbjct: 627 ctacacgctgaggtacaagtcgatctgcaggacggcgttgttggtggtggcgttgaagga 568

                                                                       
Query: 168 attcgtccgaagcaggccgtagccagcagccccgcggaaggcgccggtgccgccgacaac 227
            | |||||  || |||||||| || || || |||||||   |||||| ||||||||| ||
Sbjct: 567 gtgcgtcctgaggaggccgtacccggcggcgccgcggagcacgccggcgccgccgaccac 508

                                                
Query: 228 cggcagctccctgacgctgtcgaggatggcgtccctg 264
           |||||||||||| ||   |||||||||||||||||||
Sbjct: 507 cggcagctccctcacctcgtcgaggatggcgtccctg 471
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  105 bits (53), Expect = 7e-20
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                           
Query: 108     ctacacgtttaggtacatgtcgatctggagcacggcgttgttcgtggtggcgttgaaagt 167
               ||||||| | ||||||| ||||||||| || ||||||||||| |||||||||||||| | 
Sbjct: 5985792 ctacacgctgaggtacaagtcgatctgcaggacggcgttgttggtggtggcgttgaagga 5985733

                                                                           
Query: 168     attcgtccgaagcaggccgtagccagcagccccgcggaaggcgccggtgccgccgacaac 227
                | |||||  || |||||||| || || || |||||||   |||||| ||||||||| ||
Sbjct: 5985732 gtgcgtcctgaggaggccgtacccggcggcgccgcggagcacgccggcgccgccgaccac 5985673

                                                    
Query: 228     cggcagctccctgacgctgtcgaggatggcgtccctg 264
               |||||||||||| ||   |||||||||||||||||||
Sbjct: 5985672 cggcagctccctcacctcgtcgaggatggcgtccctg 5985636



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 201     gcggaaggcgccggtgccgccgacaaccggcagctccctgacg 243
               |||||||||||||||||||||||  ||||||| ||||| ||||
Sbjct: 3984432 gcggaaggcgccggtgccgccgatcaccggcatctcccggacg 3984390



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 201     gcggaaggcgccggtgccgccgac 224
               |||||| |||||||||||||||||
Sbjct: 3923240 gcggaacgcgccggtgccgccgac 3923263
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>gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019D06
              map S10616A, complete sequence
          Length = 182486

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 201    gcggaaggcgccggtgccgccgacaaccggcagctccctgacg 243
              |||||||||||||||||||||||  ||||||| ||||| ||||
Sbjct: 103364 gcggaaggcgccggtgccgccgatcaccggcatctcccggacg 103322



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   gcggaaggcgccggtgccgccgac 224
             |||||| |||||||||||||||||
Sbjct: 42172 gcggaacgcgccggtgccgccgac 42195
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>dbj|AK060077.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B12, full
           insert sequence
          Length = 981

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 201 gcggaaggcgccggtgccgccgacaaccggcagctccctgacg 243
           |||||||||||||||||||||||  ||||||| ||||| ||||
Sbjct: 537 gcggaaggcgccggtgccgccgatcaccggcatctcccggacg 495
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>gb|AC159030.2| Pan troglodytes BAC clone CH251-399F13 from chromosome unknown, complete
              sequence
          Length = 176914

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 230    gcagctccctgacgctgtcgagg 252
              |||||||||||||||||||||||
Sbjct: 123553 gcagctccctgacgctgtcgagg 123575
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>emb|AL132796.4|CNS01DTL Human chromosome 14 DNA sequence BAC R-1127D7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161322

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 230    gcagctccctgacgctgtcgagg 252
              |||||||||||||||||||||||
Sbjct: 120694 gcagctccctgacgctgtcgagg 120672
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>dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6
          Length = 37511

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    caacttttatcaaaaagaaaag 36
             ||||||||||||||||||||||
Sbjct: 13002 caacttttatcaaaaagaaaag 13023
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>gb|AC140316.3| Mus musculus BAC clone RP23-419L10 from chromosome 18, complete
             sequence
          Length = 195911

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    caagcatgcatgcaaatgcaaatac 76
             |||||||||||||| ||||||||||
Sbjct: 57287 caagcatgcatgcacatgcaaatac 57311
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>gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complete sequence
          Length = 83023

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    ttatcaaaaagaaaagtacat 41
             |||||||||||||||||||||
Sbjct: 28637 ttatcaaaaagaaaagtacat 28617
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 242     cgctgtcgaggatggcgtccc 262
               |||||||||||||||||||||
Sbjct: 3272220 cgctgtcgaggatggcgtccc 3272200
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>gb|AC007481.6|AC007481 Homo sapiens chromosome 8, clone RP11-50A1, complete sequence
          Length = 137032

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 24     tcaaaaagaaaagtacatata 44
              |||||||||||||||||||||
Sbjct: 113211 tcaaaaagaaaagtacatata 113191
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 240     gacgctgtcgaggatggcgtc 260
               |||||||||||||||||||||
Sbjct: 4777914 gacgctgtcgaggatggcgtc 4777894
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 206     aggcgccggtgccgccgacaaccg 229
               ||||||||||| ||||||||||||
Sbjct: 1194913 aggcgccggtgacgccgacaaccg 1194936
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>ref|XM_482075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 801

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 208 gcgccggtgccgccgacaaccggcagctccct 239
           ||||||||||||||||| ||||  ||||||||
Sbjct: 495 gcgccggtgccgccgaccaccgcgagctccct 464
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>ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OSJNBb0058B20.4), mRNA
          Length = 486

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 202 cggaaggcgccggtgccgccgacaaccggcagctcc 237
           ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 451 cggaacgcgcccgtgccgccgaccaccggccgctcc 416
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>ref|XM_476383.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 821

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 215 tgccgccgacaaccggcagctccctgac 242
           |||||||||| |||| ||||||||||||
Sbjct: 474 tgccgccgaccaccgccagctccctgac 447
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>ref|XM_476382.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 779

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 215 tgccgccgacaaccggcagctccctgac 242
           |||||||||| |||| ||||||||||||
Sbjct: 187 tgccgccgaccaccgccagctccctgac 214
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>gb|AF157706.1| Human herpesvirus 6B strain Z29, complete genome
          Length = 162114

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     aaagaaaagtacatatacgt 47
              ||||||||||||||||||||
Sbjct: 132157 aaagaaaagtacatatacgt 132176
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>gb|U92288.1|HHU92288 Human herpesvirus 6 serotype B putative major immediate-early genes
          Length = 30752

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    aaagaaaagtacatatacgt 47
             ||||||||||||||||||||
Sbjct: 19491 aaagaaaagtacatatacgt 19510
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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0050N08, complete sequence
          Length = 144593

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 202  cggaaggcgccggtgccgccgacaaccggcagctcc 237
            ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 6767 cggaacgcgcccgtgccgccgaccaccggccgctcc 6802
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>gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete sequence
          Length = 177380

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tatcaaaaagaaaagtacat 41
             ||||||||||||||||||||
Sbjct: 52977 tatcaaaaagaaaagtacat 52958
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   acgctgtcgaggatggcgtc 260
             ||||||||||||||||||||
Sbjct: 67096 acgctgtcgaggatggcgtc 67077
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     cgctgtcgaggatggcgtcc 261
               ||||||||||||||||||||
Sbjct: 1853318 cgctgtcgaggatggcgtcc 1853337



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     cgctgtcgaggatggcgtcc 261
               ||||||||||||||||||||
Sbjct: 1817984 cgctgtcgaggatggcgtcc 1818003
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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 202   cggaaggcgccggtgccgccgacaaccggcagctcc 237
             ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 12999 cggaacgcgcccgtgccgccgaccaccggccgctcc 12964
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>emb|BX539324.15| Zebrafish DNA sequence from clone DKEY-225G6 in linkage group 10,
             complete sequence
          Length = 178074

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aaaaagaaaagtacatatac 45
             ||||||||||||||||||||
Sbjct: 82098 aaaaagaaaagtacatatac 82117
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     cggaaggcgccggtgccgcc 221
               ||||||||||||||||||||
Sbjct: 1639270 cggaaggcgccggtgccgcc 1639289
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 202      cggaaggcgccggtgccgccgacaaccggcagctcc 237
                ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 12907851 cggaacgcgcccgtgccgccgaccaccggccgctcc 12907886
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 208      gcgccggtgccgccgacaaccggcagctccct 239
                ||||||||||||||||| ||||  ||||||||
Sbjct: 17606824 gcgccggtgccgccgaccaccgcgagctccct 17606793
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 215    tgccgccgacaaccggcagctccctgac 242
              |||||||||| |||| ||||||||||||
Sbjct: 383824 tgccgccgaccaccgccagctccctgac 383797
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>gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence
          Length = 106143

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   gcagctccctgacgctgtcg 249
             ||||||||||||||||||||
Sbjct: 49878 gcagctccctgacgctgtcg 49859
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>gb|AC105419.2| Homo sapiens BAC clone RP11-502O9 from 2, complete sequence
          Length = 113552

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 15   caacttttatcaaaaagaaaagta 38
            |||||||||||| |||||||||||
Sbjct: 1194 caacttttatcacaaagaaaagta 1217
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     ggaaggcgccggtgccgccg 222
               ||||||||||||||||||||
Sbjct: 5693895 ggaaggcgccggtgccgccg 5693914
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>gb|AF274853.3| Homo sapiens chromosome X clone RP5-892C22 map q28, complete sequence
          Length = 112222

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    caaaaagaaaagtacatata 44
             ||||||||||||||||||||
Sbjct: 99010 caaaaagaaaagtacatata 98991
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>gb|AC079246.2| Homo sapiens BAC clone CTD-2002G20 from 2, complete sequence
          Length = 99940

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    caacttttatcaaaaagaaaagta 38
             |||||||||||| |||||||||||
Sbjct: 99134 caacttttatcacaaagaaaagta 99157
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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   cgccggtgccgccgacaacc 228
             ||||||||||||||||||||
Sbjct: 28562 cgccggtgccgccgacaacc 28543
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     tgccgccgacaaccggcagc 234
               ||||||||||||||||||||
Sbjct: 4301091 tgccgccgacaaccggcagc 4301072
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>dbj|AB021506.1| Human herpesvirus 6B DNA, complete genome, strain: HST
          Length = 161573

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     aaagaaaagtacatatacgt 47
              ||||||||||||||||||||
Sbjct: 131973 aaagaaaagtacatatacgt 131992
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>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1317D11
          Length = 135043

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 215    tgccgccgacaaccggcagctccctgac 242
              |||||||||| |||| ||||||||||||
Sbjct: 108062 tgccgccgaccaccgccagctccctgac 108035
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>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0436B06
          Length = 148947

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 208   gcgccggtgccgccgacaaccggcagctccct 239
             ||||||||||||||||| ||||  ||||||||
Sbjct: 83474 gcgccggtgccgccgaccaccgcgagctccct 83443
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>dbj|AK108186.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B09, full
           insert sequence
          Length = 801

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 208 gcgccggtgccgccgacaaccggcagctccct 239
           ||||||||||||||||| ||||  ||||||||
Sbjct: 495 gcgccggtgccgccgaccaccgcgagctccct 464
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>dbj|AK065027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G12, full
           insert sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 215 tgccgccgacaaccggcagctccctgac 242
           |||||||||| |||| ||||||||||||
Sbjct: 187 tgccgccgaccaccgccagctccctgac 214
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>dbj|AK062751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G03, full
           insert sequence
          Length = 820

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 215 tgccgccgacaaccggcagctccctgac 242
           |||||||||| |||| ||||||||||||
Sbjct: 474 tgccgccgaccaccgccagctccctgac 447
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>gb|AY107059.1| Zea mays PCO097556 mRNA sequence
          Length = 607

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gcggaaggcgccggtgccgc 220
           ||||||||||||||||||||
Sbjct: 211 gcggaaggcgccggtgccgc 230
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>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete
             sequence
          Length = 178731

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    caaaaagaaaagtacatata 44
             ||||||||||||||||||||
Sbjct: 91229 caaaaagaaaagtacatata 91210
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>gb|AY910577.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 1
             (ABCB1) gene, complete cds
          Length = 213010

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tatcaaaaagaaaagtacat 41
             ||||||||||||||||||||
Sbjct: 97871 tatcaaaaagaaaagtacat 97890
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>gb|AC155895.2| Medicago truncatula chromosome 2 BAC clone mth2-82i6, complete sequence
          Length = 131083

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ttttatcaaaaagaaaagta 38
             ||||||||||||||||||||
Sbjct: 66960 ttttatcaaaaagaaaagta 66941
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 202      cggaaggcgccggtgccgccgacaaccggcagctcc 237
                ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 12915191 cggaacgcgcccgtgccgccgaccaccggccgctcc 12915226
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>emb|Z68880.1|CET14G10 Caenorhabditis elegans Cosmid T14G10, complete sequence
          Length = 22920

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   aagcatgcatgcaaatgcaa 72
            ||||||||||||||||||||
Sbjct: 5295 aagcatgcatgcaaatgcaa 5314
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>emb|AL672127.9| Mouse DNA sequence from clone RP23-370O18 on chromosome X, complete
             sequence
          Length = 161908

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ttttatcaaaaagaaaagta 38
             ||||||||||||||||||||
Sbjct: 80021 ttttatcaaaaagaaaagta 80040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,330,405
Number of Sequences: 3902068
Number of extensions: 2330405
Number of successful extensions: 47766
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47198
Number of HSP's gapped (non-prelim): 564
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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