>LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 468

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 230 LFVGTSTAGRLIDVRPCSNLGE*KLVNG 313
           +F+G+ T GR+ D+R  + + E + VNG
Sbjct: 344 VFIGSCTNGRIEDLRAAAKIAEGRTVNG 371

>TEGU_SHV21 (Q01056) Probable large tegument protein|
          Length = 2469

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 276  GLTSMSRPAVEVPTKSYEQKLDRQYYGPISPLEIYS 169
            G T   +  +E P  S    L++QY  P   LE++S
Sbjct: 1947 GTTEPFKTMIEAPKSSLSTNLNKQYVSPPHELEVFS 1982

>QUEA_PELLD (Q3B5E2) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 341

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 315 APLTNFHSPRLLHGLTSMSRPAVEVPTKSYEQKLDRQY 202
           A LTNFH+PR    + + +    ++  ++Y + LD++Y
Sbjct: 292 ALLTNFHAPRSTVLMLTAAFAGPDLLRRAYREALDKEY 329

>HNF3A_RAT (P23512) Hepatocyte nuclear factor 3-alpha (HNF-3A) (Forkhead box|
           protein A1)
          Length = 466

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 315 APLTNFHSPRLLHGLTSMSRPAVEVPTKSYEQKLDRQYYGPISPLEI 175
           AP  +F+ P  ++ L S S    ++  K+YEQ L    YG   P  +
Sbjct: 385 APHYSFNHPFSINNLMSSSEQQHKLDFKAYEQALQYSPYGATLPASL 431


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,124,325
Number of Sequences: 219361
Number of extensions: 685834
Number of successful extensions: 1691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)