ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet06b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197038.1| Oryza sativa (japonica cultivar-group) putative... 66 4e-08
2gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 gen... 66 4e-08
3gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 66 4e-08
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 4e-08
6dbj|AK174708.1| Ciona intestinalis cDNA, clone:cign066g10, full ... 44 0.16
7emb|AL138920.11| Human DNA sequence from clone RP11-148B2 on chr... 42 0.64
8emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in ... 42 0.64
9gb|AC005875.2|AC005875 citb_188_b_12, complete sequence 42 0.64
10gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 42 0.64
11gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, co... 42 0.64
12gb|AY962590.1| Candida orthopsilosis strain MCO456 mitochondrion... 40 2.5
13gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, comp... 40 2.5
14gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, com... 40 2.5
15emb|AL591076.5| Human DNA sequence from clone RP11-96I12 on chro... 40 2.5
16emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 2.5
17emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 i... 40 2.5
18gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, comple... 40 2.5
19dbj|AK015097.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 2.5
20gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, r... 40 2.5
21gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome 2R, r... 40 2.5
22gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26... 40 2.5
23emb|AL928875.4| Zebrafish DNA sequence from clone CH211-114C12, ... 40 2.5

>ref|NM_197038.1| Oryza sativa (japonica cultivar-group) putative nodulin
            (OSJNBa0012L23.36), mRNA
          Length = 1458

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 153  agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201
            |||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 1425 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 1377



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>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete
             sequence
          Length = 153182

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 153   agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201
             |||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 12224 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 12176



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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
             sequence
          Length = 178692

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 153   agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201
             |||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 17527 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17575



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 153      agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201
                |||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 17657104 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17657056



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 153      agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201
                |||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct: 17666144 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17666096



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>dbj|AK174708.1| Ciona intestinalis cDNA, clone:cign066g10, full insert sequence
          Length = 936

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 acacttatattgacttgtctca 36
          ||||||||||||||||||||||
Sbjct: 5  acacttatattgacttgtctca 26



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>emb|AL138920.11| Human DNA sequence from clone RP11-148B2 on chromosome 10 Contains the
             RAB18 gene for RAB18, member RAS oncogene family and a CpG
             island, complete sequence
          Length = 168217

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    caccaggactgcatgtactta 96
             |||||||||||||||||||||
Sbjct: 11367 caccaggactgcatgtactta 11387



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>emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in linkage group 18,
             complete sequence
          Length = 251217

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     taaataaaacacttatattga 27
             |||||||||||||||||||||
Sbjct: 23794 taaataaaacacttatattga 23814



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>gb|AC005875.2|AC005875 citb_188_b_12, complete sequence
          Length = 131535

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     caccaggactgcatgtactta 96
              |||||||||||||||||||||
Sbjct: 112875 caccaggactgcatgtactta 112895



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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    ttcacaatcacaggggcatgt 63
             |||||||||||||||||||||
Sbjct: 33209 ttcacaatcacaggggcatgt 33189



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>gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, complete sequence
          Length = 181434

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 43   ttcacaatcacaggggcatgt 63
            |||||||||||||||||||||
Sbjct: 2164 ttcacaatcacaggggcatgt 2184



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>gb|AY962590.1| Candida orthopsilosis strain MCO456 mitochondrion, complete genome
          Length = 22528

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   catgtacttatttaatttaa 106
            ||||||||||||||||||||
Sbjct: 3116 catgtacttatttaatttaa 3135



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>gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, complete sequence
          Length = 218429

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     tttaatttaaaagcttggtgacaa 120
              ||||||||||| ||||||||||||
Sbjct: 187709 tttaatttaaaggcttggtgacaa 187732



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>gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, complete sequence
          Length = 133179

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    tttaatttaaaagcttggtgacaa 120
             ||||||||||| ||||||||||||
Sbjct: 28424 tttaatttaaaggcttggtgacaa 28447



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>emb|AL591076.5| Human DNA sequence from clone RP11-96I12 on chromosome 6 Contains the
             GPR6 gene for G protein-coupled receptor 6. Contains a CpG
             island, complete sequence
          Length = 93427

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cacacccattcacaatcaca 54
             ||||||||||||||||||||
Sbjct: 26696 cacacccattcacaatcaca 26715



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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aatttaaaagcttggtgaca 119
             ||||||||||||||||||||
Sbjct: 37015 aatttaaaagcttggtgaca 36996



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>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13,
             complete sequence
          Length = 171465

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    atgtacttatttaatttaaa 107
             ||||||||||||||||||||
Sbjct: 53652 atgtacttatttaatttaaa 53671



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>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     cttatttaatttaaaagctt 112
              ||||||||||||||||||||
Sbjct: 130505 cttatttaatttaaaagctt 130524



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>dbj|AK015097.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930405G09 product:unclassifiable, full
           insert sequence
          Length = 1060

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 97  tttaatttaaaagcttggtgacaa 120
           ||||||||||| ||||||||||||
Sbjct: 148 tttaatttaaaggcttggtgacaa 125



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>gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR14L19, complete sequence
          Length = 192763

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    taaaacacttatattgactt 30
             ||||||||||||||||||||
Sbjct: 22029 taaaacacttatattgactt 22048



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>gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome 2R, region 48C2-48C5, P1 clone
             DS03299, complete sequence
          Length = 72986

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    taaaacacttatattgactt 30
             ||||||||||||||||||||
Sbjct: 48632 taaaacacttatattgactt 48651



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>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete
              sequence
          Length = 268836

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     taaaacacttatattgactt 30
              ||||||||||||||||||||
Sbjct: 177373 taaaacacttatattgactt 177392



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>emb|AL928875.4| Zebrafish DNA sequence from clone CH211-114C12, complete sequence
          Length = 158038

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tgtacttatttaatttaaaa 108
              ||||||||||||||||||||
Sbjct: 106903 tgtacttatttaatttaaaa 106922


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,488,528
Number of Sequences: 3902068
Number of extensions: 2488528
Number of successful extensions: 179440
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179288
Number of HSP's gapped (non-prelim): 152
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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