| Clone Name | rbaet06b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197038.1| Oryza sativa (japonica cultivar-group) putative nodulin (OSJNBa0012L23.36), mRNA Length = 1458 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 153 agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201 |||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 1425 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 1377
>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete sequence Length = 153182 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 153 agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201 |||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 12224 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 12176
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Plus Query: 153 agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201 |||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17527 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17575
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 153 agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201 |||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17657104 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17657056
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 153 agtgcccatccacgccgggggtagcatcccagtctgttcgtgcaccgtc 201 |||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17666144 agtgcccatccacgccggcggcagcatcccggtctgctcgtgcaccgtc 17666096
>dbj|AK174708.1| Ciona intestinalis cDNA, clone:cign066g10, full insert sequence Length = 936 Score = 44.1 bits (22), Expect = 0.16 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 acacttatattgacttgtctca 36 |||||||||||||||||||||| Sbjct: 5 acacttatattgacttgtctca 26
>emb|AL138920.11| Human DNA sequence from clone RP11-148B2 on chromosome 10 Contains the RAB18 gene for RAB18, member RAS oncogene family and a CpG island, complete sequence Length = 168217 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 caccaggactgcatgtactta 96 ||||||||||||||||||||| Sbjct: 11367 caccaggactgcatgtactta 11387
>emb|BX088593.12| Zebrafish DNA sequence from clone DKEY-6E12 in linkage group 18, complete sequence Length = 251217 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 taaataaaacacttatattga 27 ||||||||||||||||||||| Sbjct: 23794 taaataaaacacttatattga 23814
>gb|AC005875.2|AC005875 citb_188_b_12, complete sequence Length = 131535 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 caccaggactgcatgtactta 96 ||||||||||||||||||||| Sbjct: 112875 caccaggactgcatgtactta 112895
>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence Length = 210342 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttcacaatcacaggggcatgt 63 ||||||||||||||||||||| Sbjct: 33209 ttcacaatcacaggggcatgt 33189
>gb|AC110254.11| Mus musculus chromosome 5, clone RP23-271B12, complete sequence Length = 181434 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttcacaatcacaggggcatgt 63 ||||||||||||||||||||| Sbjct: 2164 ttcacaatcacaggggcatgt 2184
>gb|AY962590.1| Candida orthopsilosis strain MCO456 mitochondrion, complete genome Length = 22528 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 catgtacttatttaatttaa 106 |||||||||||||||||||| Sbjct: 3116 catgtacttatttaatttaa 3135
>gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, complete sequence Length = 218429 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 tttaatttaaaagcttggtgacaa 120 ||||||||||| |||||||||||| Sbjct: 187709 tttaatttaaaggcttggtgacaa 187732
>gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, complete sequence Length = 133179 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 tttaatttaaaagcttggtgacaa 120 ||||||||||| |||||||||||| Sbjct: 28424 tttaatttaaaggcttggtgacaa 28447
>emb|AL591076.5| Human DNA sequence from clone RP11-96I12 on chromosome 6 Contains the GPR6 gene for G protein-coupled receptor 6. Contains a CpG island, complete sequence Length = 93427 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 cacacccattcacaatcaca 54 |||||||||||||||||||| Sbjct: 26696 cacacccattcacaatcaca 26715
>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete sequence Length = 104638 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 aatttaaaagcttggtgaca 119 |||||||||||||||||||| Sbjct: 37015 aatttaaaagcttggtgaca 36996
>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13, complete sequence Length = 171465 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 atgtacttatttaatttaaa 107 |||||||||||||||||||| Sbjct: 53652 atgtacttatttaatttaaa 53671
>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence Length = 168190 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cttatttaatttaaaagctt 112 |||||||||||||||||||| Sbjct: 130505 cttatttaatttaaaagctt 130524
>dbj|AK015097.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930405G09 product:unclassifiable, full insert sequence Length = 1060 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 tttaatttaaaagcttggtgacaa 120 ||||||||||| |||||||||||| Sbjct: 148 tttaatttaaaggcttggtgacaa 125
>gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR14L19, complete sequence Length = 192763 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 taaaacacttatattgactt 30 |||||||||||||||||||| Sbjct: 22029 taaaacacttatattgactt 22048
>gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome 2R, region 48C2-48C5, P1 clone DS03299, complete sequence Length = 72986 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 taaaacacttatattgactt 30 |||||||||||||||||||| Sbjct: 48632 taaaacacttatattgactt 48651
>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete sequence Length = 268836 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 taaaacacttatattgactt 30 |||||||||||||||||||| Sbjct: 177373 taaaacacttatattgactt 177392
>emb|AL928875.4| Zebrafish DNA sequence from clone CH211-114C12, complete sequence Length = 158038 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tgtacttatttaatttaaaa 108 |||||||||||||||||||| Sbjct: 106903 tgtacttatttaatttaaaa 106922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,488,528 Number of Sequences: 3902068 Number of extensions: 2488528 Number of successful extensions: 179440 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 179288 Number of HSP's gapped (non-prelim): 152 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)