ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet04h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown ... 66 4e-08
2ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predic... 66 4e-08
3emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4,... 66 4e-08
4gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno... 66 4e-08
5gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 66 4e-08
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 66 4e-08
8dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
9dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 4e-08
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 66 4e-08
11ref|XM_468578.1| Oryza sativa (japonica cultivar-group), predic... 58 1e-05
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 1e-05
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
14gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 58 1e-05
15dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
16dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
17gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 2.3
18gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, compl... 40 2.3
19emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chr... 40 2.3
20gb|AC097067.3| Homo sapiens BAC clone RP11-558N14 from 4, comple... 40 2.3
21gb|AC130709.3| Homo sapiens BAC clone RP11-361B14 from 2, comple... 40 2.3
22gb|AC016943.7|AC016943 Homo sapiens 3 BAC RP11-380G10 (Roswell P... 40 2.3
23emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chr... 40 2.3
24gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 2.3
25gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 2.3
26ref|XM_630708.1| Dictyostelium discoideum hypothetical protein (... 38 9.1
27ref|XM_517204.1| PREDICTED: Pan troglodytes similar to mitochond... 38 9.1
28gb|BC014356.1| Homo sapiens mitochondrial ribosomal protein L1, ... 38 9.1
29ref|NM_020236.2| Homo sapiens mitochondrial ribosomal protein L1... 38 9.1
30gb|BC017765.1| Homo sapiens mitochondrial ribosomal protein L1, ... 38 9.1
31emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chr... 38 9.1
32emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chr... 38 9.1
33gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 38 9.1
34emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chr... 38 9.1
35gb|AF523663.1| Gavia immer clone TUMWGi7.1.95 microsatellite seq... 38 9.1
36emb|CR606749.1| full-length cDNA clone CS0DI049YI04 of Placenta ... 38 9.1
37gb|AC008885.5| Homo sapiens chromosome 5 clone CTD-2218K11, comp... 38 9.1
38gb|AC108174.1| Homo sapiens chromosome 5 clone RP11-78C3, comple... 38 9.1
39gb|DQ374433.1| Branchiostoma belcheri Sry-like protein C (soxc) ... 38 9.1
40emb|CR457191.1| Homo sapiens full open reading frame cDNA clone ... 38 9.1
41gb|AF212225.1|AF212225 Homo sapiens BM022 mRNA, complete cds 38 9.1
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
43gb|AC112225.4| Homo sapiens BAC clone RP13-488H8 from 4, complet... 38 9.1
44gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complet... 38 9.1
45gb|AC010982.5| Homo sapiens BAC clone RP11-475I16 from 2, comple... 38 9.1
46gb|AC147918.2| Xenopus tropicalis clone CH216-8N16, complete seq... 38 9.1
47dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.1
48dbj|AK024791.1| Homo sapiens cDNA: FLJ21138 fis, clone CAS07525 38 9.1
49emb|AL669843.4| Human DNA sequence from clone XXbac-33F23 on chr... 38 9.1
50gb|BC032595.1| Homo sapiens mitochondrial ribosomal protein L1, ... 38 9.1
51gb|BC015109.1| Homo sapiens mitochondrial ribosomal protein L1, ... 38 9.1
52emb|AL929562.12| Mouse DNA sequence from clone RP23-77H16 on chr... 38 9.1
53gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, comple... 38 9.1
54dbj|AB049474.1| Homo sapiens MRPL1 mRNA for mitochondrial riboso... 38 9.1 
>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0040D23.1), mRNA
          Length = 1494

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 1021 tgaacagctcgaggcagtgctcctggtcaaggttcctgctccagaactt 973
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>ref|XM_473641.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 1012 tgaagagctctaggcagtgctcctggtccaggttcctgctccagaactt 964
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>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23,
              complete sequence
          Length = 149892

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                               
Query: 135    tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
              |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 114224 tgaagagctctaggcagtgctcctggtccaggttcctgctccagaactt 114176
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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 135   tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
             |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 88035 tgaacagctcgaggcagtgctcctggtcaaggttcctgctccagaactt 87987
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 135   tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
             |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 12681 tgaacagctcgaggcagtgctcctggtcaaggttcctgctccagaactt 12633
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 135      tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
                |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 29311178 tgaagagctctaggcagtgctcctggtccaggttcctgctccagaactt 29311130
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 135      tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
                |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 20372533 tgaacagctcgaggcagtgctcctggtcaaggttcctgctccagaactt 20372485
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>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full
            insert sequence
          Length = 1361

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 1087 tgaagagctctaggcagtgctcctggtccaggttcctgctccagaactt 1039
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>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full
            insert sequence
          Length = 1361

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 1087 tgaagagctctaggcagtgctcctggtccaggttcctgctccagaactt 1039
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 135      tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
                |||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 20383805 tgaacagctcgaggcagtgctcctggtcaaggttcctgctccagaactt 20383757
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>ref|XM_468578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 135 tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
           |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 727 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 679
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 135     tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
               |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 1215396 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 1215444
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                
Query: 135     tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
               |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 1215394 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 1215442
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>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
             complete sequence
          Length = 146241

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 135   tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
             |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 20298 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 20346
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>dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B12, full
            insert sequence
          Length = 1268

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 1031 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 983
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>dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full
            insert sequence
          Length = 1285

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 135  tgaaaagctccaggcagtggtcctggtcgaggttcctgctccagaactt 183
            |||| ||||||| |||||| || ||||||||||| ||||||||||||||
Sbjct: 1034 tgaagagctccaagcagtgttcttggtcgaggtttctgctccagaactt 986
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     gatcctcacccaacccaagc 76
              ||||||||||||||||||||
Sbjct: 211791 gatcctcacccaacccaagc 211772
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>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence
          Length = 194221

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gatcctcacccaacccaagc 76
              ||||||||||||||||||||
Sbjct: 182448 gatcctcacccaacccaagc 182467
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>emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chromosome 11 Contains a
            novel gene, complete sequence
          Length = 149879

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  gctccaggcagtggtcctgg 160
            ||||||||||||||||||||
Sbjct: 4154 gctccaggcagtggtcctgg 4173
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>gb|AC097067.3| Homo sapiens BAC clone RP11-558N14 from 4, complete sequence
          Length = 136500

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     aataattcaagtaacccgcaccac 32
             ||||||||||||||||| ||||||
Sbjct: 72210 aataattcaagtaaccctcaccac 72187
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>gb|AC130709.3| Homo sapiens BAC clone RP11-361B14 from 2, complete sequence
          Length = 17309

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    catttttaaataattcaagt 20
            ||||||||||||||||||||
Sbjct: 3771 catttttaaataattcaagt 3752
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>gb|AC016943.7|AC016943 Homo sapiens 3 BAC RP11-380G10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175992

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     atttttaaataattcaagta 21
             ||||||||||||||||||||
Sbjct: 48105 atttttaaataattcaagta 48086
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>emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chromosome 4, complete
              sequence
          Length = 199694

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 158    tggtcgaggttcctgctccagaacttat 185
              ||||||| | ||||||||||||||||||
Sbjct: 176793 tggtcgatgatcctgctccagaacttat 176820
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tttttaaataattcaagtaa 22
              ||||||||||||||||||||
Sbjct: 510216 tttttaaataattcaagtaa 510235
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       atttttaaataattcaagta 21
               ||||||||||||||||||||
Sbjct: 1849596 atttttaaataattcaagta 1849615
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>ref|XM_630708.1| Dictyostelium discoideum hypothetical protein (DDB0188837), partial
            mRNA
          Length = 2394

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    catttttaaataattcaag 19
            |||||||||||||||||||
Sbjct: 1190 catttttaaataattcaag 1208
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>ref|XM_517204.1| PREDICTED: Pan troglodytes similar to mitochondrial ribosomal
           protein L1 (LOC461228), mRNA
          Length = 1169

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 726 catttttaaataattcaag 708
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>gb|BC014356.1| Homo sapiens mitochondrial ribosomal protein L1, mRNA (cDNA clone
           MGC:24210 IMAGE:3686618), complete cds
          Length = 1204

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 740 catttttaaataattcaag 722
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>ref|NM_020236.2| Homo sapiens mitochondrial ribosomal protein L1 (MRPL1), nuclear
           gene encoding mitochondrial protein, mRNA
          Length = 1284

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 820 catttttaaataattcaag 802
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>gb|BC017765.1| Homo sapiens mitochondrial ribosomal protein L1, mRNA (cDNA clone
           IMAGE:4284885), containing frame-shift errors
          Length = 993

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 737 catttttaaataattcaag 719
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>emb|AL591375.8| Human DNA sequence from clone RP11-124K13 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 84016

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    ttattttttggccgtggat 59
             |||||||||||||||||||
Sbjct: 82545 ttattttttggccgtggat 82527
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>emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chromosome 6 Contains
           part of a novel gene, complete sequence
          Length = 77888

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  ttattttttggccgtggat 59
           |||||||||||||||||||
Sbjct: 529 ttattttttggccgtggat 511
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 158     tggtcgaggttcctgctccagaa 180
               |||||| ||||||||||||||||
Sbjct: 2467798 tggtcgtggttcctgctccagaa 2467776
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>emb|AL591426.17| Mouse DNA sequence from clone RP23-345E8 on chromosome 11 Contains a
             novel gene, the Arht1 gene for ras homolog gene family
             member T1, the 5' end of the Rhbdl4 gene for rhomboid
             veinlet-like 4 (Drosophila), complete sequence
          Length = 153420

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 137   aaaagctccaggcagtggt 155
             |||||||||||||||||||
Sbjct: 51027 aaaagctccaggcagtggt 51045
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>gb|AF523663.1| Gavia immer clone TUMWGi7.1.95 microsatellite sequence
          Length = 563

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 6   ttaaataattcaagtaacc 24
           |||||||||||||||||||
Sbjct: 502 ttaaataattcaagtaacc 520
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>emb|CR606749.1| full-length cDNA clone CS0DI049YI04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 898

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 578 catttttaaataattcaag 560
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>gb|AC008885.5| Homo sapiens chromosome 5 clone CTD-2218K11, complete sequence
          Length = 127790

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     atttttaaataattcaagt 20
             |||||||||||||||||||
Sbjct: 69844 atttttaaataattcaagt 69862
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>gb|AC108174.1| Homo sapiens chromosome 5 clone RP11-78C3, complete sequence
          Length = 162435

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 2   atttttaaataattcaagt 20
           |||||||||||||||||||
Sbjct: 943 atttttaaataattcaagt 925
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>gb|DQ374433.1| Branchiostoma belcheri Sry-like protein C (soxc) gene, complete cds
          Length = 2422

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 96  cacgaggcaagcttgtgca 114
           |||||||||||||||||||
Sbjct: 4   cacgaggcaagcttgtgca 22
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>emb|CR457191.1| Homo sapiens full open reading frame cDNA clone RZPDo834D1212D for
           gene MRPL1, mitochondrial ribosomal protein L1; complete
           cds, incl. stopcodon
          Length = 912

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 652 catttttaaataattcaag 634
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>gb|AF212225.1|AF212225 Homo sapiens BM022 mRNA, complete cds
          Length = 1282

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 820 catttttaaataattcaag 802
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 58       atcctcacccaacccaagc 76
                |||||||||||||||||||
Sbjct: 11735107 atcctcacccaacccaagc 11735089
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>gb|AC112225.4| Homo sapiens BAC clone RP13-488H8 from 4, complete sequence
          Length = 110961

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     catttttaaataattcaag 19
             |||||||||||||||||||
Sbjct: 76963 catttttaaataattcaag 76945
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>gb|AC017079.5| Homo sapiens BAC clone RP11-462M9 from 2, complete sequence
          Length = 176075

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 144    ccaggcagtggtcctggtc 162
              |||||||||||||||||||
Sbjct: 150957 ccaggcagtggtcctggtc 150939
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>gb|AC010982.5| Homo sapiens BAC clone RP11-475I16 from 2, complete sequence
          Length = 217107

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    tgaaaagctccaggcagtg 153
              |||||||||||||||||||
Sbjct: 157653 tgaaaagctccaggcagtg 157635
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>gb|AC147918.2| Xenopus tropicalis clone CH216-8N16, complete sequence
          Length = 210128

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      ttaaataattcaagtaacc 24
              |||||||||||||||||||
Sbjct: 129440 ttaaataattcaagtaacc 129422
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     atcctcacccaacccaagc 76
              |||||||||||||||||||
Sbjct: 169741 atcctcacccaacccaagc 169723
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>dbj|AK024791.1| Homo sapiens cDNA: FLJ21138 fis, clone CAS07525
          Length = 974

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 519 catttttaaataattcaag 501
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>emb|AL669843.4| Human DNA sequence from clone XXbac-33F23 on chromosome 6, complete
             sequence
          Length = 183384

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 135   tgaaaagctccaggcagtg 153
             |||||||||||||||||||
Sbjct: 55595 tgaaaagctccaggcagtg 55577
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>gb|BC032595.1| Homo sapiens mitochondrial ribosomal protein L1, mRNA (cDNA clone
           MGC:45037 IMAGE:5527878), complete cds
          Length = 1178

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 727 catttttaaataattcaag 709
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>gb|BC015109.1| Homo sapiens mitochondrial ribosomal protein L1, mRNA (cDNA clone
           MGC:22872 IMAGE:4044993), complete cds
          Length = 1194

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 729 catttttaaataattcaag 711
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>emb|AL929562.12| Mouse DNA sequence from clone RP23-77H16 on chromosome 2, complete
             sequence
          Length = 104128

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 137   aaaagctccaggcagtggt 155
             |||||||||||||||||||
Sbjct: 83870 aaaagctccaggcagtggt 83888
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>gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, complete sequence
          Length = 171533

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 143    tccaggcagtggtcctggt 161
              |||||||||||||||||||
Sbjct: 133707 tccaggcagtggtcctggt 133689
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>dbj|AB049474.1| Homo sapiens MRPL1 mRNA for mitochondrial ribosomal protein L1
           (L1mt), complete cds
          Length = 1139

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   catttttaaataattcaag 19
           |||||||||||||||||||
Sbjct: 690 catttttaaataattcaag 672


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,275,629
Number of Sequences: 3902068
Number of extensions: 2275629
Number of successful extensions: 145382
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145010
Number of HSP's gapped (non-prelim): 372
length of query: 185
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 163
effective length of database: 17,147,199,772
effective search space: 2794993562836
effective search space used: 2794993562836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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