| Clone Name | rbaet04d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9 (hsp16.9-17LC3) mRNA, partial cds Length = 440 Score = 69.9 bits (35), Expect = 4e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Plus Query: 104 gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 157 |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353 Query: 158 ttcaaactcgtggc 171 |||||||| ||||| Sbjct: 354 ttcaaacttgtggc 367 Score = 56.0 bits (28), Expect = 6e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 219 ggacggacggacggatcaggcgcaggtgtatcccgg 254 |||||||||| ||||||||||||||||||| ||||| Sbjct: 390 ggacggacgggcggatcaggcgcaggtgtagcccgg 425
>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210923 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 acggacggacggacggatcagg 238 |||||||||||||||||||||| Sbjct: 171016 acggacggacggacggatcagg 170995
>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229681 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 acggacggacggacggatcagg 238 |||||||||||||||||||||| Sbjct: 70676 acggacggacggacggatcagg 70655
>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence Length = 422 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 acggacggacggacggatcag 237 ||||||||||||||||||||| Sbjct: 113 acggacggacggacggatcag 93
>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482), partial mRNA Length = 1770 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 acaaatcttacaagatttca 59 |||||||||||||||||||| Sbjct: 339 acaaatcttacaagatttca 358
>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2, complete sequence Length = 175342 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggaacggacggacggacgga 233 |||||||||||||||||||| Sbjct: 123816 ggaacggacggacggacgga 123797
>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8, complete sequence Length = 137166 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gaacggacggacggacggat 234 |||||||||||||||||||| Sbjct: 63584 gaacggacggacggacggat 63603
>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21, complete sequence Length = 153142 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggaacggacggacggacgga 233 |||||||||||||||||||| Sbjct: 66734 ggaacggacggacggacgga 66715
>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206191 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 17 caccttccatagccactggatatacaaa 44 |||||||||||||||||| |||||||| Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650
>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162273 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 17 caccttccatagccactggatatacaaa 44 |||||||||||||||||| |||||||| Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacggacggacggacggatc 235 |||||||||||||||||||| Sbjct: 33695616 aacggacggacggacggatc 33695597
>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20, complete sequence Length = 174999 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ggaacggacggacggacgga 233 |||||||||||||||||||| Sbjct: 123472 ggaacggacggacggacgga 123453
>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20 Length = 74452 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 gaacggacggacggacggat 234 |||||||||||||||||||| Sbjct: 73734 gaacggacggacggacggat 73753
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacggacggacggacggatc 235 |||||||||||||||||||| Sbjct: 64023 aacggacggacggacggatc 64004
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 aacggacggacggacggatc 235 |||||||||||||||||||| Sbjct: 26483 aacggacggacggacggatc 26464
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence Length = 148678 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggaacggacggacggacgga 233 |||||||||||||||||||| Sbjct: 124799 ggaacggacggacggacgga 124818 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,752,171 Number of Sequences: 3902068 Number of extensions: 1752171 Number of successful extensions: 46621 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46529 Number of HSP's gapped (non-prelim): 92 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)