>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1279

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 22/54 (40%), Positives = 39/54 (72%)
 Frame = -2

Query: 319  EMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 158
            EMR+RL   NP + + ++   LEA+GRG W+  +  +E L+E+Y+++ED++EG+
Sbjct: 1222 EMRERLATLNPQAIKNIVGRMLEAHGRGMWKADQSMIEELQEIYADLEDRLEGM 1275

>BCHH_RHOS4 (Q9RFD5) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1193

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = -2

Query: 316  MRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 158
            MR+RL + NP +  ++ +  LEA+ R YW+   + L  L+    E+ED++EGI
Sbjct: 1138 MRRRLAELNPEASVRMAERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190

>BCHH_RHOCA (P26162) Magnesium-chelatase subunit H (EC 6.6.1.1)|
            (Mg-protoporphyrin IX chelatase subunit H)
          Length = 1194

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -2

Query: 319  EMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGI 158
            EMR+RL   N  +  ++ Q  LEA+ R YW+     L  L+    E+ED++EG+
Sbjct: 1138 EMRERLASLNSAASSRMAQRLLEASDRNYWQPDPATLAALQAAADELEDRMEGV 1191

>Y1441_METJA (Q58836) Hypothetical protein MJ1441|
          Length = 1226

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -2

Query: 319  EMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIE 164
            E RK   + N  +  ++ +  LEA  RG W+T+E N+E L+  Y E+E  IE
Sbjct: 1143 ENRKFFKEHNIYALEEIARRLLEAYQRGLWKTTEGNIEELKRAYLEIEGDIE 1194

>Y908_METJA (Q58318) Hypothetical protein MJ0908|
          Length = 1232

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -2

Query: 319  EMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIE 164
            +M +   + NP +   + +  LEA  RG W+  E+  E+LR+ Y E+E  IE
Sbjct: 1178 DMEEFFKENNPYALLNITERLLEAIERGMWKADEEMKEKLRKKYLEIEGMIE 1229

>PQQF_KLEPN (P27508) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)|
           (Pyrroloquinoline quinone biosynthesis protein F)
          Length = 761

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = +2

Query: 164 FDLVFNLRVKLPEP-------FQVIL*--CLPVAS------AICF*EGLKQLPERIGISV 298
           FD  + L ++LPEP        Q IL    LPVAS      +I     + QLPER+G S 
Sbjct: 490 FDGSWQLTLQLPEPGRRPEAILQAILRQLALPVASLTPSPESIAIRHLMAQLPERLGTSG 549

Query: 299 HQ 304
           HQ
Sbjct: 550 HQ 551

>AN32C_HUMAN (O43423) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member C (Tumorigenic protein pp32r1)
          Length = 234

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 304 LMDTNPNSFRKLLQ-TFLEANGRGYWETSEDNLERLRELYSEVEDKIEGID 155
           L D   N F+ LLQ T+L++    YW+  E         YS++ED +EG+D
Sbjct: 124 LNDYGENVFKLLLQLTYLDSC---YWDHKEAP-------YSDIEDHVEGLD 164

>SYFB_PSYAR (Q4FQ66) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 801

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
 Frame = +2

Query: 95  QKNSFLVKCWNWLISEMSSPVNSFD---LVFNLRVKLPEPFQVI 217
           + ++FLV   N+++ E+  P+++FD   +V ++ V+L +P + I
Sbjct: 250 RSHNFLVDVTNYVLMELGQPLHAFDADTIVGDIVVRLAQPEETI 293

>Y338_MYCGE (P47580) Hypothetical lipoprotein MG338 precursor|
          Length = 1271

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
 Frame = -3

Query: 210 WKGSGSFTRRLKTRSKELTGELISL---------INQFQHLTKKEFF 97
           +K + SFT    T +KEL GE             I  +Q+LT KE F
Sbjct: 795 FKNTNSFTNNFDTSNKELKGEFSDFNDLVKQALYIRSWQNLTSKERF 841

>SYG_PYRFU (Q8U0G2) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 568

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 319 EMRKRLMDTNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEG 161
           E+ ++L   +    RKL++  L ANG+   E  E  LE+   +  EVE+KI+G
Sbjct: 379 EINEKLKSMSQEELRKLVEE-LNANGKVIIEGHE--LEKEDLIIKEVEEKIQG 428

>QUEA_BACLD (Q65GP8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 342

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -2

Query: 280 FRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGIDR*THFTDQPVPALDQKGI 101
           F ++L++  E     Y +   D+ ER + +YS+ +          HFT++ + AL +KG+
Sbjct: 138 FYEVLESLGEMPLPPYIKEQLDDRERYQTVYSKKQGSAAAPTAGLHFTEEILDALREKGV 197

Query: 100 FL 95
            +
Sbjct: 198 HI 199

>RIPA_XENLA (Q9W704) RPA-interacting protein A (RPA-interacting protein alpha)|
           (XRIPalpha)
          Length = 226

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -3

Query: 180 LKTRSKELTGELISLINQFQHLTKKEFFCL---VELKLV*FVIYISCNMQYRPLTKRVVR 10
           L+   +EL  E  ++I +F+++ + E  CL   VEL     ++   CN  Y  +T   + 
Sbjct: 101 LEEIKQELLLEEKAMIEEFENILQFEEQCLDSVVELSTGDQIVCPVCNRNYLTVTSCFIV 160

Query: 9   CEC 1
           C+C
Sbjct: 161 CQC 163

>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48)
          Length = 1692

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = -2

Query: 295 TNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGIDR*THFTD------ 134
           T P+ F KL+          Y   SE+  + LRE+ +++EDK E +D+   F D      
Sbjct: 352 TGPDIFAKLVPMAAHEASSLY---SEEKAKLLREMLAKIEDKNEVLDQ---FMDSMQLDP 405

Query: 133 QPVPALDQKGIFLPR*VETC 74
           + V  LD      P+ +E C
Sbjct: 406 ETVDNLDAYNHIPPQLMEKC 425

>NFI_ARCFU (O30108) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)|
           (Deoxyribonuclease V) (DNase V)
          Length = 221

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 46  VTTYINYKLYKFQLNEAKKFLFGQVLELVD------Q*NEFTGQFLRSC 174
           + TYI  KL K  +   KK LFG+++E+ D        +E  G  L+SC
Sbjct: 116 LATYIALKLRKPTVGITKKRLFGEMVEVEDGLWRLLDGSETIGYALKSC 164

>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14)
          Length = 1636

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = -2

Query: 295 TNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGIDR*THFTD------ 134
           T P+ F KL+          Y   SE+  + LRE+ +++EDK E +D+   F D      
Sbjct: 352 TGPDIFAKLVPMAAHEASSLY---SEEKAKLLREMMAKIEDKNEVLDQ---FMDSMQLDP 405

Query: 133 QPVPALDQKGIFLPR*VETC 74
           + V  LD      P+ +E C
Sbjct: 406 ETVDNLDAYSHIPPQLMEKC 425

>FOXJ1_RAT (Q63247) Forkhead box protein J1 (Hepatocyte nuclear factor 3|
           forkhead homolog 4) (HFH-4)
          Length = 421

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 277 RKLLQTFLEANGRGYWETSEDNLERLRE 194
           ++LLQ F EA G G W T E  L   R+
Sbjct: 248 QQLLQEFEEATGEGGWGTGEGRLGHKRK 275

>LEU2_RHIRA (P17279) 3-isopropylmalate dehydratase (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 644

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 289 PNSFRKLLQ---TFL-EANGRGYWETSEDNLERLRELYSEVEDKIEGI 158
           P + RK+ +   TF+ EA+ R   ET E N+E     Y  +ED  +GI
Sbjct: 113 PTTTRKIFKNITTFIKEADSRTQCETLEQNIEAFGLTYFGMEDSRQGI 160

>ATM_CRYNE (Q5KFE0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2967

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 266 KQLPERIGISVHQPLPHL 319
           +++PE+I I++H+ LPHL
Sbjct: 311 RRIPEQIAIAIHRILPHL 328

>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14) (Fragment)
          Length = 1499

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 295 TNPNSFRKLLQTFLEANGRGYWETSEDNLERLRELYSEVEDKIEGIDR 152
           T P+ F KL+          Y   SE+  + LRE+ +++EDK E +D+
Sbjct: 177 TGPDIFAKLVPMAAHEASSLY---SEEKAKLLREMLAKIEDKNEVLDQ 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,917,582
Number of Sequences: 219361
Number of extensions: 753484
Number of successful extensions: 2418
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)