ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet04a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBBB_PEA (P56679) Seed trypsin/chymotrypsin inhibitor IVB (PSTI-... 30 1.2
2RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc... 30 1.5
3IBBA_PEA (Q41065) Seed trypsin/chymotrypsin inhibitor IVA precur... 29 2.6

>IBBB_PEA (P56679) Seed trypsin/chymotrypsin inhibitor IVB (PSTI-IVB)|
           [Contains: Seed trypsin/chymotrypsin inhibitor II (PSTI
           II)]
          Length = 72

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -1

Query: 159 TCQLACWLLSRASDNPKKCVCV*TSSMC-KYCH 64
           TC  AC     A  NP KC C  T   C K CH
Sbjct: 30  TCHSACLSCICAYSNPPKCQCFDTQKFCYKACH 62



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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
            protein of testis) (Proliferation potential-related
            protein) (Protein P2P-R)
          Length = 1790

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 98   QTHFFGLSLALDRSQQAS*HVPVSGSTNRDSKLLGTE*QDKIATY*IINYVLDNHKDQQT 277
            Q HF  LS +   ++ +  H  V GS+N+D     T  +DK   Y   +Y     +D++ 
Sbjct: 1438 QGHFKTLSQSSKETRTSEKHESVRGSSNKDF----TPGRDKKVDYDSRDYSSSKRRDERG 1493

Query: 278  WRDRETDQPP 307
               R  D PP
Sbjct: 1494 ELARRKDSPP 1503



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>IBBA_PEA (Q41065) Seed trypsin/chymotrypsin inhibitor IVA precursor (PSTI|
           IVA) (TI12-36) [Contains: Seed trypsin/chymotrypsin
           inhibitor I (PSTI I)] (Fragment)
          Length = 96

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -1

Query: 159 TCQLACWLLSRASDNPKKCVCV*TSSMC-KYCH 64
           TC  AC     A  NP KC C  T   C K CH
Sbjct: 54  TCHSACDSCICAYSNPPKCQCFDTHKFCYKACH 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,253,004
Number of Sequences: 219361
Number of extensions: 680011
Number of successful extensions: 1287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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