ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet04a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 624 e-176
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 624 e-176
3dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 624 e-176
4dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clon... 624 e-176
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 624 e-176
6gb|AF467730.1| Oryza sativa putative dormancy-asociated protein ... 605 e-170
7dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
8gb|AY103814.1| Zea mays PCO099562 mRNA sequence 54 3e-04
9gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete seq... 52 0.001
10emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on ... 46 0.069
11gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome... 42 1.1
12gb|AC112262.3| Mus musculus BAC clone RP23-363E22 from 7, comple... 42 1.1
13emb|BX284672.11| Zebrafish DNA sequence from clone DKEY-88N24 in... 42 1.1
14emb|CR392330.9| Zebrafish DNA sequence from clone CH211-282J17 i... 42 1.1
15gb|AC109220.16| Mus musculus chromosome 7, clone RP23-84B11, com... 42 1.1
16gb|AY733101.1| Lepidium draba subsp. draba clone Ledr11 microsat... 40 4.3
17gb|AC107795.17| Mus musculus chromosome 1, clone RP23-433P9, com... 40 4.3
18gb|AC032027.7| Homo sapiens chromosome 8, clone RP11-342K10, com... 40 4.3
19gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, co... 40 4.3
20gb|AC157800.9| Mus musculus chromosome 1, clone RP24-286C21, com... 40 4.3
21emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in ... 40 4.3
22gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosom... 40 4.3
23gb|AC132032.1| Homo sapiens 3 BAC RP11-4H14 (Roswell Park Cancer... 40 4.3
24gb|AC174221.4| Mus musculus BAC clone RP24-237K1 from chromosome... 40 4.3
25emb|BX323074.14| Zebrafish DNA sequence from clone RP71-26B20, c... 40 4.3
26gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 4.3
27gb|AC009423.5|AC009423 Homo sapiens chromosome , clone RP11-45A1... 40 4.3
28emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, ... 40 4.3
29emb|BX649314.6| Zebrafish DNA sequence from clone DKEYP-111A3 in... 40 4.3
30gb|AC007978.15|AC007978 Mus musculus BAC MGS3-335O7 (Genome Sys... 40 4.3
31emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on ch... 40 4.3
32gb|AC023881.6| Homo sapiens BAC clone RP11-108C2 from 2, complet... 40 4.3
33gb|AC148974.5| Mus musculus BAC clone RP24-165K23 from chromosom... 40 4.3
34emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, ... 40 4.3
35gb|AC132318.4| Mus musculus BAC clone RP24-249F24 from 3, comple... 40 4.3
36emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 ... 40 4.3
37gb|AC133585.11| Mus musculus chromosome 14, clone RP24-456G16, c... 40 4.3
38gb|AC134249.4| Mus musculus BAC clone RP23-359K17 from 12, compl... 40 4.3
39gb|U95455.1|HIVU95455 HIV-1 clone 8 isolate BV from Milan, envel... 40 4.3
40gb|U95452.1|HIVU95452 HIV-1 clone 3 isolate BV from Milan, envel... 40 4.3 
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score =  624 bits (315), Expect = e-176
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                         
Query: 6     aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54371 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 54430

                                                                         
Query: 66    ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54431 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 54490

                                                                         
Query: 126   cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54491 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 54550

                                                                         
Query: 186   acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54551 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 54610

                                                                         
Query: 246   acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 54611 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctc 54670

                                
Query: 306   cgatcaatgggattattta 324
             |||||||||||||||||||
Sbjct: 54671 cgatcaatgggattattta 54689
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  624 bits (315), Expect = e-176
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                            
Query: 6        aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26252722 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 26252781

                                                                            
Query: 66       ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26252782 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 26252841

                                                                            
Query: 126      cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26252842 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 26252901

                                                                            
Query: 186      acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26252902 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 26252961

                                                                            
Query: 246      acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 26252962 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctc 26253021

                                   
Query: 306      cgatcaatgggattattta 324
                |||||||||||||||||||
Sbjct: 26253022 cgatcaatgggattattta 26253040
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>dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E08, full
           insert sequence
          Length = 782

 Score =  624 bits (315), Expect = e-176
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 718

                                                                       
Query: 66  ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 658

                                                                       
Query: 126 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 598

                                                                       
Query: 186 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 538

                                                                       
Query: 246 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 537 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctc 478

                              
Query: 306 cgatcaatgggattattta 324
           |||||||||||||||||||
Sbjct: 477 cgatcaatgggattattta 459
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>dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H08, full
           insert sequence
          Length = 801

 Score =  624 bits (315), Expect = e-176
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 718

                                                                       
Query: 66  ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 658

                                                                       
Query: 126 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 598

                                                                       
Query: 186 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 538

                                                                       
Query: 246 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 537 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctc 478

                              
Query: 306 cgatcaatgggattattta 324
           |||||||||||||||||||
Sbjct: 477 cgatcaatgggattattta 459
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  624 bits (315), Expect = e-176
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                            
Query: 6        aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26566980 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 26567039

                                                                            
Query: 66       ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26567040 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 26567099

                                                                            
Query: 126      cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26567100 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 26567159

                                                                            
Query: 186      acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26567160 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 26567219

                                                                            
Query: 246      acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 26567220 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctc 26567279

                                   
Query: 306      cgatcaatgggattattta 324
                |||||||||||||||||||
Sbjct: 26567280 cgatcaatgggattattta 26567298
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>gb|AF467730.1| Oryza sativa putative dormancy-asociated protein mRNA, complete cds
          Length = 787

 Score =  605 bits (305), Expect = e-170
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 706 aagctggtattggtattatcacatcaaaggtaattaaacgctgaaagtagggaaacacac 647

                                                                       
Query: 66  ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggcagtatttacacatggaagatgtttacacacaaacacacttctttgggttgtcgctag 587

                                                                       
Query: 126 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cccttgataggagccagcaggctagctgacacgtaccggtctctggtagtactaacagag 527

                                                                       
Query: 186 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acagcaagctactaggaacagagtaacaagataagatagcaacatactagataattaatt 467

                                                                       
Query: 246 acgtattagataaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctc 305
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 466 acgtattagataaccacaaggaccagcaaacatggcgtgacagagagatcgaccagcctc 407

                            
Query: 306 cgatcaatgggattatt 322
           |||||||||||||||||
Sbjct: 406 cgatcaatgggattatt 390
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>dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A09, full
           insert sequence
          Length = 859

 Score =  127 bits (64), Expect = 2e-26
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                       
Query: 257 aaccacaaggaccagcaaacgtggcgtgacagagagaccgaccagcctccgatcaatggg 316
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   aaccacaaggaccagcaaacgtggcgtgacagagagatcgaccagcctccgatcaatggg 60

                   
Query: 317 attattta 324
           ||||||||
Sbjct: 61  attattta 68
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>gb|AY103814.1| Zea mays PCO099562 mRNA sequence
          Length = 1044

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 251 ttagataaccacaaggaccagcaaacgtggc 281
           |||||||||||||||||||||||||| ||||
Sbjct: 682 ttagataaccacaaggaccagcaaacatggc 652
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>gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete sequence
          Length = 129695

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 251   ttagataaccacaaggaccagcaaac 276
             ||||||||||||||||||||||||||
Sbjct: 14037 ttagataaccacaaggaccagcaaac 14012
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>emb|Z94055.1|HS24M15 Human DNA sequence from clone RP1-24M15 on chromosome 1q24-25 Contains
              part of the TNR gene fortenascin R (restrictin, janusin),
              complete sequence
          Length = 134539

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 84     aagatgtttacacacaaacacac 106
              |||||||||||||||||||||||
Sbjct: 119927 aagatgtttacacacaaacacac 119949
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>gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome 7, complete sequence
          Length = 183537

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     agatgtttacacacaaacaca 105
              |||||||||||||||||||||
Sbjct: 159047 agatgtttacacacaaacaca 159067
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>gb|AC112262.3| Mus musculus BAC clone RP23-363E22 from 7, complete sequence
          Length = 150399

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 85   agatgtttacacacaaacaca 105
            |||||||||||||||||||||
Sbjct: 6270 agatgtttacacacaaacaca 6290
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>emb|BX284672.11| Zebrafish DNA sequence from clone DKEY-88N24 in linkage group 20
             Contains give genes for novel proteins with Lectin C-type
             domains, the gene for a novel protein similar to
             vertebrate NDRG (N-myc downregulated gene family) member 2
             (NDGR2), two novel genes and two CpG islands, complete
             sequence
          Length = 149982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    tttacacacaaacacacttct 110
             |||||||||||||||||||||
Sbjct: 96564 tttacacacaaacacacttct 96584
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>emb|CR392330.9| Zebrafish DNA sequence from clone CH211-282J17 in linkage group 20
             Contains eight genes for novel lectin C-type domain
             containing protein, complete sequence
          Length = 136773

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    tttacacacaaacacacttct 110
             |||||||||||||||||||||
Sbjct: 91483 tttacacacaaacacacttct 91463



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ttacacacaaacacacttct 110
             ||||||||||||||||||||
Sbjct: 75606 ttacacacaaacacacttct 75587
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>gb|AC109220.16| Mus musculus chromosome 7, clone RP23-84B11, complete sequence
          Length = 212018

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   aacagagtaacaagataagat 222
             |||||||||||||||||||||
Sbjct: 77432 aacagagtaacaagataagat 77412
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>gb|AY733101.1| Lepidium draba subsp. draba clone Ledr11 microsatellite sequence
          Length = 240

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  acacacaaacacacttcttt 112
           ||||||||||||||||||||
Sbjct: 74  acacacaaacacacttcttt 55
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>gb|AC107795.17| Mus musculus chromosome 1, clone RP23-433P9, complete sequence
          Length = 216501

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     acacacaaacacacttcttt 112
              ||||||||||||||||||||
Sbjct: 143191 acacacaaacacacttcttt 143172
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>gb|AC032027.7| Homo sapiens chromosome 8, clone RP11-342K10, complete sequence
          Length = 179063

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     acacacaaacacacttcttt 112
              ||||||||||||||||||||
Sbjct: 161462 acacacaaacacacttcttt 161443
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>gb|AC115768.9| Mus musculus chromosome 19, clone RP23-107E10, complete sequence
          Length = 212161

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   ataaccacaaggaccagcaa 274
             ||||||||||||||||||||
Sbjct: 25274 ataaccacaaggaccagcaa 25255
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>gb|AC157800.9| Mus musculus chromosome 1, clone RP24-286C21, complete sequence
          Length = 164708

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     acacacaaacacacttcttt 112
              ||||||||||||||||||||
Sbjct: 123889 acacacaaacacacttcttt 123908
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>emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in linkage group 8,
             complete sequence
          Length = 114516

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    tttacacacaaacacacttc 109
             ||||||||||||||||||||
Sbjct: 28592 tttacacacaaacacacttc 28573
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>gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosome 6, complete sequence
          Length = 200529

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     atgtttacacacaaacacac 106
              ||||||||||||||||||||
Sbjct: 152355 atgtttacacacaaacacac 152374
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>gb|AC132032.1| Homo sapiens 3 BAC RP11-4H14 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 106938

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   atgtttacacacaaacacac 106
            ||||||||||||||||||||
Sbjct: 6558 atgtttacacacaaacacac 6577
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>gb|AC174221.4| Mus musculus BAC clone RP24-237K1 from chromosome y, complete sequence
          Length = 171789

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atgtttacacacaaacacac 106
             ||||||||||||||||||||
Sbjct: 83620 atgtttacacacaaacacac 83639
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>emb|BX323074.14| Zebrafish DNA sequence from clone RP71-26B20, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     agatgtttacacacaaacac 104
              ||||||||||||||||||||
Sbjct: 146697 agatgtttacacacaaacac 146678
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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    acacacaaacacacttcttt 112
             ||||||||||||||||||||
Sbjct: 88491 acacacaaacacacttcttt 88472
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>gb|AC009423.5|AC009423 Homo sapiens chromosome , clone RP11-45A19, complete sequence
          Length = 74998

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 93   acacacaaacacacttcttt 112
            ||||||||||||||||||||
Sbjct: 8749 acacacaaacacacttcttt 8730
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>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence
          Length = 164682

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    cacacaaacacacttctttg 113
             ||||||||||||||||||||
Sbjct: 20755 cacacaaacacacttctttg 20774
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>emb|BX649314.6| Zebrafish DNA sequence from clone DKEYP-111A3 in linkage group 23,
              complete sequence
          Length = 170403

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tttacacacaaacacacttc 109
              ||||||||||||||||||||
Sbjct: 105160 tttacacacaaacacacttc 105179
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>gb|AC007978.15|AC007978 Mus musculus  BAC MGS3-335O7 (Genome Systems Mouse BAC Library)
             complete sequence
          Length = 183936

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atgtttacacacaaacacac 106
             ||||||||||||||||||||
Sbjct: 53465 atgtttacacacaaacacac 53484
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>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
              sequence
          Length = 180092

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     atggaagatgtttacacaca 99
              ||||||||||||||||||||
Sbjct: 169770 atggaagatgtttacacaca 169789
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>gb|AC023881.6| Homo sapiens BAC clone RP11-108C2 from 2, complete sequence
          Length = 185802

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     atgtttacacacaaacacac 106
              ||||||||||||||||||||
Sbjct: 131633 atgtttacacacaaacacac 131614
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>gb|AC148974.5| Mus musculus BAC clone RP24-165K23 from chromosome y, complete sequence
          Length = 200783

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    atgtttacacacaaacacac 106
             ||||||||||||||||||||
Sbjct: 17461 atgtttacacacaaacacac 17442
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>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence
          Length = 176196

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tttacacacaaacacacttc 109
             ||||||||||||||||||||
Sbjct: 87251 tttacacacaaacacacttc 87270



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    tttacacacaaacacacttc 109
             ||||||||||||||||||||
Sbjct: 32834 tttacacacaaacacacttc 32853
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>gb|AC132318.4| Mus musculus BAC clone RP24-249F24 from 3, complete sequence
          Length = 167159

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ttacacatggaagatgttta 93
             ||||||||||||||||||||
Sbjct: 49064 ttacacatggaagatgttta 49083
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>emb|BX511212.10| Zebrafish DNA sequence from clone CH211-127A14 in linkage group 19,
             complete sequence
          Length = 178832

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atgtttacacacaaacacac 106
             ||||||||||||||||||||
Sbjct: 94625 atgtttacacacaaacacac 94644
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>gb|AC133585.11| Mus musculus chromosome 14, clone RP24-456G16, complete sequence
          Length = 174807

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    cacaaacacacttctttggg 115
             ||||||||||||||||||||
Sbjct: 68958 cacaaacacacttctttggg 68977
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>gb|AC134249.4| Mus musculus BAC clone RP23-359K17 from 12, complete sequence
          Length = 190423

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 83     gaagatgtttacacacaaacacac 106
              ||||||||||||||||| ||||||
Sbjct: 107554 gaagatgtttacacacacacacac 107531
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>gb|U95455.1|HIVU95455 HIV-1 clone 8 isolate BV from Milan, envelope glycoprotein, V1-V5
           region (env) gene, partial cds
          Length = 1211

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   agctggtattggtattatca 26
           ||||||||||||||||||||
Sbjct: 207 agctggtattggtattatca 188
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>gb|U95452.1|HIVU95452 HIV-1 clone 3 isolate BV from Milan, envelope glycoprotein, V1-V5
           region (env) gene, partial cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   agctggtattggtattatca 26
           ||||||||||||||||||||
Sbjct: 208 agctggtattggtattatca 189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,779,795
Number of Sequences: 3902068
Number of extensions: 2779795
Number of successful extensions: 133568
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133403
Number of HSP's gapped (non-prelim): 165
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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