| Clone Name | rbaet04a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on chromosome 10 Contains the gene for a novel OTU-like cysteine protease domain containing protein (LOC220213) and a CpG island, complete sequence Length = 182917 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agtactaataatggtctggga 78 ||||||||||||||||||||| Sbjct: 108417 agtactaataatggtctggga 108437
>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence Length = 102117 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 aaacatgaaataaacaagcta 130 ||||||||||||||||||||| Sbjct: 69334 aaacatgaaataaacaagcta 69354
>emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158473 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 atcaaacataattaaacatgaaata 121 ||||||||||||||||||| ||||| Sbjct: 30359 atcaaacataattaaacattaaata 30383
>emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-280K24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190519 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 attaaacatgaaataaacaag 127 ||||||||||||||||||||| Sbjct: 34838 attaaacatgaaataaacaag 34818
>emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1124A8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155619 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 atcaaacataattaaacatgaaata 121 ||||||||||||||||||| ||||| Sbjct: 43632 atcaaacataattaaacattaaata 43656
>gb|U53344.3| Caenorhabditis elegans cosmid T07H6, complete sequence Length = 32196 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 caataagcaacacgaatcaaacat 105 |||||||||||||||| ||||||| Sbjct: 16178 caataagcaacacgaagcaaacat 16155
>gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, complete sequence Length = 162384 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ttaaacatgaaataaacaag 127 |||||||||||||||||||| Sbjct: 32348 ttaaacatgaaataaacaag 32367
>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5' end of the BMP6 gene for bone morphogenetic protein 6 and a CpG island, complete sequence Length = 152786 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ataattaaacatgaaataaa 123 |||||||||||||||||||| Sbjct: 15126 ataattaaacatgaaataaa 15107
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aaacataattaaacatgaaataaa 123 |||||||||||||| ||||||||| Sbjct: 1182150 aaacataattaaacctgaaataaa 1182127
>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1, complete sequence Length = 213398 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 attaaacatgaaataaacaa 126 |||||||||||||||||||| Sbjct: 126506 attaaacatgaaataaacaa 126487
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 caaaataagtactaataatg 70 |||||||||||||||||||| Sbjct: 2262962 caaaataagtactaataatg 2262981
>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence Length = 165004 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 acaaaataagtactaataat 69 |||||||||||||||||||| Sbjct: 92000 acaaaataagtactaataat 92019
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 aatcacaaaataagtactaataat 69 ||||||||||| |||||||||||| Sbjct: 254835 aatcacaaaattagtactaataat 254812
>ref|NM_076652.3| Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, complete cds Length = 1934 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 caataagcaacacgaatcaaacat 105 |||||||||||||||| ||||||| Sbjct: 1176 caataagcaacacgaagcaaacat 1199
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 attacaatcacaaaataagt 60 |||||||||||||||||||| Sbjct: 19894847 attacaatcacaaaataagt 19894866
>gb|AC025574.19| Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 60153 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cacaaaataagtactaataa 68 |||||||||||||||||||| Sbjct: 22362 cacaaaataagtactaataa 22343
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 attacaatcacaaaataagt 60 |||||||||||||||||||| Sbjct: 59497 attacaatcacaaaataagt 59516
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 attacaatcacaaaataagt 60 |||||||||||||||||||| Sbjct: 135006 attacaatcacaaaataagt 135025
>emb|AJ298970.1|ACA298970 Apistogramma caetei mitochondrial partial D-loop, site GC #3 Length = 365 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caaccatatccatggtggtc 190 |||||||||||||||||||| Sbjct: 74 caaccatatccatggtggtc 93
>emb|AJ298969.1|ACA298969 Apistogramma caetei mitochondrial partial D-loop, site GC #2 Length = 365 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caaccatatccatggtggtc 190 |||||||||||||||||||| Sbjct: 74 caaccatatccatggtggtc 93
>emb|AJ298968.1|ACA298968 Apistogramma caetei mitochondrial partial D-loop, site GC #1 Length = 365 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caaccatatccatggtggtc 190 |||||||||||||||||||| Sbjct: 74 caaccatatccatggtggtc 93 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,523,027 Number of Sequences: 3902068 Number of extensions: 3523027 Number of successful extensions: 53119 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53046 Number of HSP's gapped (non-prelim): 73 length of query: 234 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 212 effective length of database: 17,147,199,772 effective search space: 3635206351664 effective search space used: 3635206351664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)