ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet04a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on ch... 42 0.76
2gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, comple... 42 0.76
3emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial... 42 0.76
4emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-2... 42 0.76
5emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1... 42 0.76
6gb|U53344.3| Caenorhabditis elegans cosmid T07H6, complete sequence 40 3.0
7gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, comp... 40 3.0
8emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chrom... 40 3.0
9emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome 40 3.0
10emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 ... 40 3.0
11dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 3.0
12gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complet... 40 3.0
13gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome 40 3.0
14ref|NM_076652.3| Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, ... 40 3.0
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
16gb|AC025574.19| Homo sapiens 12 BAC RP11-348M3 (Roswell Park Can... 40 3.0
17dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
18dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
19emb|AJ298970.1|ACA298970 Apistogramma caetei mitochondrial parti... 40 3.0
20emb|AJ298969.1|ACA298969 Apistogramma caetei mitochondrial parti... 40 3.0
21emb|AJ298968.1|ACA298968 Apistogramma caetei mitochondrial parti... 40 3.0

>emb|AL512603.26| Human DNA sequence from clone RP11-426A21 on chromosome 10 Contains the
              gene for a novel OTU-like cysteine protease domain
              containing protein (LOC220213) and a CpG island, complete
              sequence
          Length = 182917

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     agtactaataatggtctggga 78
              |||||||||||||||||||||
Sbjct: 108417 agtactaataatggtctggga 108437



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>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence
          Length = 102117

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   aaacatgaaataaacaagcta 130
             |||||||||||||||||||||
Sbjct: 69334 aaacatgaaataaacaagcta 69354



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>emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of
             library CalTech-D from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 158473

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 97    atcaaacataattaaacatgaaata 121
             ||||||||||||||||||| |||||
Sbjct: 30359 atcaaacataattaaacattaaata 30383



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>emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-280K24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190519

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   attaaacatgaaataaacaag 127
             |||||||||||||||||||||
Sbjct: 34838 attaaacatgaaataaacaag 34818



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>emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1124A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155619

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 97    atcaaacataattaaacatgaaata 121
             ||||||||||||||||||| |||||
Sbjct: 43632 atcaaacataattaaacattaaata 43656



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>gb|U53344.3| Caenorhabditis elegans cosmid T07H6, complete sequence
          Length = 32196

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    caataagcaacacgaatcaaacat 105
             |||||||||||||||| |||||||
Sbjct: 16178 caataagcaacacgaagcaaacat 16155



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>gb|AC034236.5| Homo sapiens chromosome 5 clone CTD-2287O16, complete sequence
          Length = 162384

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   ttaaacatgaaataaacaag 127
             ||||||||||||||||||||
Sbjct: 32348 ttaaacatgaaataaacaag 32367



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>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5'
             end of the BMP6 gene for bone morphogenetic protein 6 and
             a CpG island, complete sequence
          Length = 152786

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   ataattaaacatgaaataaa 123
             ||||||||||||||||||||
Sbjct: 15126 ataattaaacatgaaataaa 15107



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>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 100     aaacataattaaacatgaaataaa 123
               |||||||||||||| |||||||||
Sbjct: 1182150 aaacataattaaacctgaaataaa 1182127



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>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1,
              complete sequence
          Length = 213398

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    attaaacatgaaataaacaa 126
              ||||||||||||||||||||
Sbjct: 126506 attaaacatgaaataaacaa 126487



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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 51      caaaataagtactaataatg 70
               ||||||||||||||||||||
Sbjct: 2262962 caaaataagtactaataatg 2262981



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>gb|AC023110.8| Homo sapiens BAC clone RP11-204H9 from 4, complete sequence
          Length = 165004

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    acaaaataagtactaataat 69
             ||||||||||||||||||||
Sbjct: 92000 acaaaataagtactaataat 92019



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>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 46     aatcacaaaataagtactaataat 69
              ||||||||||| ||||||||||||
Sbjct: 254835 aatcacaaaattagtactaataat 254812



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>ref|NM_076652.3| Caenorhabditis elegans T07H6.5 (T07H6.5) mRNA, complete cds
          Length = 1934

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 82   caataagcaacacgaatcaaacat 105
            |||||||||||||||| |||||||
Sbjct: 1176 caataagcaacacgaagcaaacat 1199



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 41       attacaatcacaaaataagt 60
                ||||||||||||||||||||
Sbjct: 19894847 attacaatcacaaaataagt 19894866



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>gb|AC025574.19| Homo sapiens 12 BAC RP11-348M3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 60153

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cacaaaataagtactaataa 68
             ||||||||||||||||||||
Sbjct: 22362 cacaaaataagtactaataa 22343



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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    attacaatcacaaaataagt 60
             ||||||||||||||||||||
Sbjct: 59497 attacaatcacaaaataagt 59516



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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     attacaatcacaaaataagt 60
              ||||||||||||||||||||
Sbjct: 135006 attacaatcacaaaataagt 135025



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>emb|AJ298970.1|ACA298970 Apistogramma caetei mitochondrial partial D-loop, site GC #3
          Length = 365

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 caaccatatccatggtggtc 190
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93



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>emb|AJ298969.1|ACA298969 Apistogramma caetei mitochondrial partial D-loop, site GC #2
          Length = 365

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 caaccatatccatggtggtc 190
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93



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>emb|AJ298968.1|ACA298968 Apistogramma caetei mitochondrial partial D-loop, site GC #1
          Length = 365

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 caaccatatccatggtggtc 190
           ||||||||||||||||||||
Sbjct: 74  caaccatatccatggtggtc 93


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,523,027
Number of Sequences: 3902068
Number of extensions: 3523027
Number of successful extensions: 53119
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53046
Number of HSP's gapped (non-prelim): 73
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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