ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet03f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY107399.1| Zea mays PCO087601 mRNA sequence Length = 1198 Score = 165 bits (83), Expect = 9e-38 Identities = 140/159 (88%) Strand = Plus / Minus Query: 117 taactcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccg 176 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct: 956 taactcagcaccccattattgcacagttgtaaacgaagacgcctgcacgttccttcaccg 897 Query: 177 acagcacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagta 236 | || ||||||||||| || | | | |||| |||| ||||||||||||||||||| || Sbjct: 896 agagaacctcccagtcagcaccatcttccccaccttcagggcaccaggaatgcagcaata 837 Query: 237 tcacctcgccgcgaggtcctctatggccgccgatgacca 275 | |||||||| ||||||||||||||||| ||||| |||| Sbjct: 836 ttacctcgccacgaggtcctctatggcccccgattacca 798 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tttctgaattacaagtcatt 25 |||||||||||||||||||| Sbjct: 1046 tttctgaattacaagtcatt 1027
>ref|XM_473912.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1368 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 1368 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 1309 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 1308 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 1249 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 1248 ttcaccacggggtactctatggcc 1225
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Plus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 45456 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 45515 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 45516 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 45575 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 45576 ttcaccacggggtactctatggcc 45599
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 73368 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 73309 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 73308 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 73249 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 73248 ttcaccacggggtactctatggcc 73225
>dbj|AK061943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E01, full insert sequence Length = 662 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 412 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 353 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 352 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 293 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 292 ttcaccacggggtactctatggcc 269
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 31495685 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 31495626 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 31495625 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 31495566 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 31495565 ttcaccacggggtactctatggcc 31495542
>dbj|AK065137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A05, full insert sequence Length = 1931 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 1678 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 1619 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 1618 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 1559 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 1558 ttcaccacggggtactctatggcc 1535
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 111 bits (56), Expect = 1e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 121 tcagcaccccattattgcacagttgtaaacaaagacgccggcacgctccttcaccgacag 180 |||||||||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct: 113940 tcagcaccccattattgcgcagttataaacgaatacaccagcacgctccttcaccgagag 113881 Query: 181 cacctcccagtcggcgacgccgttcccatcttcggggcaccaggaatgcagcagtatcac 240 ||| |||||||| || | || ||||||||||| |||||||| |||||||||| ||| || Sbjct: 113880 cacttcccagtcagcaccaccattcccatcttcagggcaccaagaatgcagcaatattac 113821 Query: 241 ctcgccgcgaggtcctctatggcc 264 || || || ||| |||||||||| Sbjct: 113820 ttcaccacggggtactctatggcc 113797
>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence Length = 215308 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 caagtcattcattataagaagt 38 |||||||||||||||||||||| Sbjct: 177630 caagtcattcattataagaagt 177609
>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence Length = 152529 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 caagtcattcattataagaagt 38 |||||||||||||||||||||| Sbjct: 58497 caagtcattcattataagaagt 58476
>gb|AC092244.2| Drosophila melanogaster clone BACR19N22, complete sequence Length = 171000 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagtggcagctaaaatggca 54 |||||||||||||||||||| Sbjct: 166724 aagtggcagctaaaatggca 166705
>emb|AL157392.18| Human DNA sequence from clone RP11-295P9 on chromosome 10 Contains the PRPF18 gene for PRP18 pre-mRNA processing factor 18 homolog (yeast), a ribosomal protein L6 (RPL6)(TAXREB107) pseudogene, two novel genes, the 5' end of a novel gene, the 3' end of the gene for a novel protein (FLJ10210) and two CpG islands, complete sequence Length = 178908 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cattataagaagtggcagct 45 |||||||||||||||||||| Sbjct: 99313 cattataagaagtggcagct 99332
>gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone BACR01K07, complete sequence Length = 175867 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagtggcagctaaaatggca 54 |||||||||||||||||||| Sbjct: 10217 aagtggcagctaaaatggca 10198
>gb|AC068711.9|AC068711 Homo sapiens chromosome 15 clone CTD-2644F13 map 15q21.3, complete sequence Length = 154883 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aagtcattcattataagaag 37 |||||||||||||||||||| Sbjct: 150865 aagtcattcattataagaag 150846
>gb|AC140838.3| Homo sapiens chromosome 16 clone XXfos-84069G6, complete sequence Length = 40546 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcaccaggaatgcagcagt 235 |||||||||||||||||||| Sbjct: 579 ggcaccaggaatgcagcagt 560
>gb|AC137526.1| Homo sapiens chromosome 16 clone LA16c-444G7, complete sequence Length = 28927 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcaccaggaatgcagcagt 235 |||||||||||||||||||| Sbjct: 12525 ggcaccaggaatgcagcagt 12506
>gb|AC009559.8|AC009559 Homo sapiens chromosome 15, clone RP11-215J7, complete sequence Length = 162778 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aagtcattcattataagaag 37 |||||||||||||||||||| Sbjct: 57992 aagtcattcattataagaag 57973
>gb|AC009226.3| Homo sapiens BAC clone RP11-167C7 from 2, complete sequence Length = 138778 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cattattgcacagttgtaaa 149 |||||||||||||||||||| Sbjct: 27802 cattattgcacagttgtaaa 27783
>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete sequence Length = 346734 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagtggcagctaaaatggca 54 |||||||||||||||||||| Sbjct: 211408 aagtggcagctaaaatggca 211389
>gb|AC004716.1|AC004716 Drosophila melanogaster DNA sequence (P1 DS00164 (D269)), complete sequence Length = 86391 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aagtggcagctaaaatggca 54 |||||||||||||||||||| Sbjct: 67540 aagtggcagctaaaatggca 67521 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,999,241 Number of Sequences: 3902068 Number of extensions: 1999241 Number of successful extensions: 37804 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37758 Number of HSP's gapped (non-prelim): 46 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
