| Clone Name | rbaet03b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transporter 6 (Pht1-6) gene, complete cds Length = 2876 Score = 420 bits (212), Expect = e-115 Identities = 237/243 (97%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 9 actactaataattaaatcgaccataaactctaattaattaatta--acatggagaactct 66 |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2731 actaataataattaactcgaccataaactctaattaattaattataacatggagaactct 2672 Query: 67 gacacatgacaatagtagtattgttgttgtactcgactcctgagttgaacgtcccaacca 126 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2671 gacacatgacaatagtagtattgttgttgtactc-actcctgagttgaacgtcccaacca 2613 Query: 127 agaaaaagaaaacacccatacatccatccaaacctgcagagtataccaccggtagcatat 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2612 agaaaaagaaaacacccatacatccatccaaacctgcagagtataccaccggtagcatat 2553 Query: 187 gctagtatatctgacgtacggcgacgtctcacacgggcaccgtcctggcgtgcgtcgccg 246 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552 actagtatatctgacgtacggcgacgtctcacacgggcaccgtcctggcgtgcgtcgccg 2493 Query: 247 gcg 249 ||| Sbjct: 2492 gcg 2490
>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete sequence Length = 173254 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 128 gaaaaagaaaacacccatacat 149 |||||||||||||||||||||| Sbjct: 100423 gaaaaagaaaacacccatacat 100444
>gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A24, complete sequence Length = 158050 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aagaaaaagaaaacacccata 146 ||||||||||||||||||||| Sbjct: 129907 aagaaaaagaaaacacccata 129927
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 aagaaaaagaaaacacccata 146 ||||||||||||||||||||| Sbjct: 1180216 aagaaaaagaaaacacccata 1180196
>gb|AC102413.8| Mus musculus chromosome 3, clone RP24-462F18, complete sequence Length = 181851 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 attaacatggagaactctgac 69 ||||||||||||||||||||| Sbjct: 94622 attaacatggagaactctgac 94642
>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21, complete sequence Length = 168569 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 ccatacatccatccaaacctg 162 ||||||||||||||||||||| Sbjct: 10221 ccatacatccatccaaacctg 10201
>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21, complete sequence Length = 179432 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 ccatacatccatccaaacctg 162 ||||||||||||||||||||| Sbjct: 46583 ccatacatccatccaaacctg 46563
>emb|AL671992.5| Mouse DNA sequence from clone RP23-338G1 on chromosome X, complete sequence Length = 213940 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 tcccaaccaagaaaaagaaaa 138 ||||||||||||||||||||| Sbjct: 46158 tcccaaccaagaaaaagaaaa 46138
>gb|AC157939.15| Mus musculus chromosome 3, clone RP23-51P17, complete sequence Length = 240367 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 attaacatggagaactctgac 69 ||||||||||||||||||||| Sbjct: 28307 attaacatggagaactctgac 28287
>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete sequence Length = 150897 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 tcccaaccaagaaaaagaaaa 138 ||||||||||||||||||||| Sbjct: 31050 tcccaaccaagaaaaagaaaa 31070
>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3, complete sequence Length = 59444 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaaagaaaacacccataca 148 |||||||||||||||||||| Sbjct: 51280 aaaaagaaaacacccataca 51261
>gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosome 7, complete sequence Length = 204287 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 taattaattaattaacatgg 58 |||||||||||||||||||| Sbjct: 16774 taattaattaattaacatgg 16793
>gb|AC146073.2| Pan troglodytes BAC clone RP43-15A16 from 7, complete sequence Length = 138338 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tggagaactctgacacatga 75 |||||||||||||||||||| Sbjct: 22370 tggagaactctgacacatga 22389
>ref|XM_757903.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0871) partial mRNA Length = 1989 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cccaaccaagaaaaagaaaa 138 |||||||||||||||||||| Sbjct: 1256 cccaaccaagaaaaagaaaa 1275
>ref|XM_757913.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0881) partial mRNA Length = 1707 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cccaaccaagaaaaagaaaa 138 |||||||||||||||||||| Sbjct: 980 cccaaccaagaaaaagaaaa 999
>ref|XM_757916.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0884) partial mRNA Length = 1989 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cccaaccaagaaaaagaaaa 138 |||||||||||||||||||| Sbjct: 1256 cccaaccaagaaaaagaaaa 1275
>ref|XM_758552.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0010) partial mRNA Length = 1437 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cccaaccaagaaaaagaaaa 138 |||||||||||||||||||| Sbjct: 710 cccaaccaagaaaaagaaaa 729
>emb|AL033521.2|HS444C7 Human DNA sequence from clone RP3-444C7 on chromosome 6p22.3-23 Contains the 5' end of a novel gene (FLJ20342), complete sequence Length = 128270 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 taattaattaattaacatggagaa 62 ||||||||||||||| |||||||| Sbjct: 100871 taattaattaattaagatggagaa 100894
>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the 3' end of the Col23a1 gene for procollagen (type XXIII, alpha 1), the 5' end of a novel gene and a CpG island, complete sequence Length = 155917 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aactctaattaattaattaa 53 |||||||||||||||||||| Sbjct: 44905 aactctaattaattaattaa 44924
>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a general transcription factor II A, 1 (Gtf2a1) pseudogene, the 3' end of the Pkd1l1 gene for polycystic kidney disease 1 like 1 and a heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, complete sequence Length = 235198 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaaagaaaacacccataca 148 |||||||||||||||||||| Sbjct: 106194 aaaaagaaaacacccataca 106175
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3, complete sequence Length = 197042 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 aaaaagaaaacacccataca 148 |||||||||||||||||||| Sbjct: 23219 aaaaagaaaacacccataca 23238
>emb|BX629355.3|CNS09SBR Tetraodon nigroviridis Length = 128373 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 accaagaaaaagaaaacacc 142 |||||||||||||||||||| Sbjct: 86695 accaagaaaaagaaaacacc 86714
>gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, complete sequence Length = 169089 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 caaccaagaaaaagaaaaca 140 |||||||||||||||||||| Sbjct: 30789 caaccaagaaaaagaaaaca 30770
>gb|AF190297.1|AF190297 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) gene, complete cds Length = 11604 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aaactctaattaattaatta 52 |||||||||||||||||||| Sbjct: 1892 aaactctaattaattaatta 1873
>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete sequence Length = 162793 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 tggagaactctgacacatga 75 |||||||||||||||||||| Sbjct: 38858 tggagaactctgacacatga 38877
>gb|AC090493.4| Genomic sequence for Mus musculus, clone RP23-201D19,, complete sequence Length = 208651 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ctaattaattaattaacatg 57 |||||||||||||||||||| Sbjct: 104540 ctaattaattaattaacatg 104559
>gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete sequence Length = 110619 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aaactctaattaattaatta 52 |||||||||||||||||||| Sbjct: 67878 aaactctaattaattaatta 67897
>gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20 Length = 81877 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 aaccaagaaaaagaaaacac 141 |||||||||||||||||||| Sbjct: 23602 aaccaagaaaaagaaaacac 23583
>gb|AC135893.2| Homo sapiens 3 BAC RP11-643E20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165735 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctctaattaattaattaaca 55 |||||||||||||||||||| Sbjct: 53691 ctctaattaattaattaaca 53672
>emb|BX005304.8| Mouse DNA sequence from clone RP23-328P5 on chromosome 2, complete sequence Length = 200574 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aactctaattaattaattaa 53 |||||||||||||||||||| Sbjct: 22241 aactctaattaattaattaa 22260
>dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342a, complete sequence Length = 57652 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 aaccaagaaaaagaaaacac 141 |||||||||||||||||||| Sbjct: 14458 aaccaagaaaaagaaaacac 14439
>emb|AL670953.5| Mouse DNA sequence from clone RP23-233H9 on chromosome X, complete sequence Length = 209986 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 aaactctaattaattaattaacat 56 |||| ||||||||||||||||||| Sbjct: 54109 aaacactaattaattaattaacat 54132
>emb|AL589650.20| Mouse DNA sequence from clone RP23-81H23 on chromosome 15, complete sequence Length = 197660 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ctaattaattaattaacatg 57 |||||||||||||||||||| Sbjct: 13460 ctaattaattaattaacatg 13479
>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete sequence Length = 197852 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ataaactctaattaattaat 50 |||||||||||||||||||| Sbjct: 130693 ataaactctaattaattaat 130712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,371,706 Number of Sequences: 3902068 Number of extensions: 3371706 Number of successful extensions: 165135 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165012 Number of HSP's gapped (non-prelim): 121 length of query: 249 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 227 effective length of database: 17,147,199,772 effective search space: 3892414348244 effective search space used: 3892414348244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)