ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet03b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transpor... 420 e-115
2emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chr... 44 0.21
3gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A2... 42 0.81
4gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 42 0.81
5gb|AC102413.8| Mus musculus chromosome 3, clone RP24-462F18, com... 42 0.81
6emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in... 42 0.81
7emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in... 42 0.81
8emb|AL671992.5| Mouse DNA sequence from clone RP23-338G1 on chro... 42 0.81
9gb|AC157939.15| Mus musculus chromosome 3, clone RP23-51P17, com... 42 0.81
10emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chr... 42 0.81
11emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in ... 40 3.2
12gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosom... 40 3.2
13gb|AC146073.2| Pan troglodytes BAC clone RP43-15A16 from 7, comp... 40 3.2
14ref|XM_757903.1| Theileria parva strain Muguga chromosome 3 hypo... 40 3.2
15ref|XM_757913.1| Theileria parva strain Muguga chromosome 3 hypo... 40 3.2
16ref|XM_757916.1| Theileria parva strain Muguga chromosome 3 hypo... 40 3.2
17ref|XM_758552.1| Theileria parva strain Muguga chromosome 4 hypo... 40 3.2
18emb|AL033521.2|HS444C7 Human DNA sequence from clone RP3-444C7 o... 40 3.2
19emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on ch... 40 3.2
20emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chro... 40 3.2
21emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 3.2
22emb|BX629355.3|CNS09SBR Tetraodon nigroviridis 40 3.2
23gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, comp... 40 3.2
24gb|AF190297.1|AF190297 Arabidopsis thaliana ecotype Columbia tra... 40 3.2
25gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 40 3.2
26gb|AC090493.4| Genomic sequence for Mus musculus, clone RP23-201... 40 3.2
27gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11... 40 3.2
28gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20 40 3.2
29gb|AC135893.2| Homo sapiens 3 BAC RP11-643E20 (Roswell Park Canc... 40 3.2
30emb|BX005304.8| Mouse DNA sequence from clone RP23-328P5 on chro... 40 3.2
31dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.2
32emb|AL670953.5| Mouse DNA sequence from clone RP23-233H9 on chro... 40 3.2
33emb|AL589650.20| Mouse DNA sequence from clone RP23-81H23 on chr... 40 3.2
34emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chro... 40 3.2

>gb|AF543198.1| Hordeum vulgare subsp. vulgare phosphate transporter 6 (Pht1-6) gene,
            complete cds
          Length = 2876

 Score =  420 bits (212), Expect = e-115
 Identities = 237/243 (97%), Gaps = 3/243 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    actactaataattaaatcgaccataaactctaattaattaatta--acatggagaactct 66
            |||| |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 2731 actaataataattaactcgaccataaactctaattaattaattataacatggagaactct 2672

                                                                        
Query: 67   gacacatgacaatagtagtattgttgttgtactcgactcctgagttgaacgtcccaacca 126
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2671 gacacatgacaatagtagtattgttgttgtactc-actcctgagttgaacgtcccaacca 2613

                                                                        
Query: 127  agaaaaagaaaacacccatacatccatccaaacctgcagagtataccaccggtagcatat 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 agaaaaagaaaacacccatacatccatccaaacctgcagagtataccaccggtagcatat 2553

                                                                        
Query: 187  gctagtatatctgacgtacggcgacgtctcacacgggcaccgtcctggcgtgcgtcgccg 246
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 actagtatatctgacgtacggcgacgtctcacacgggcaccgtcctggcgtgcgtcgccg 2493

               
Query: 247  gcg 249
            |||
Sbjct: 2492 gcg 2490



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>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
              sequence
          Length = 173254

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 128    gaaaaagaaaacacccatacat 149
              ||||||||||||||||||||||
Sbjct: 100423 gaaaaagaaaacacccatacat 100444



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>gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A24, complete sequence
          Length = 158050

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    aagaaaaagaaaacacccata 146
              |||||||||||||||||||||
Sbjct: 129907 aagaaaaagaaaacacccata 129927



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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 126     aagaaaaagaaaacacccata 146
               |||||||||||||||||||||
Sbjct: 1180216 aagaaaaagaaaacacccata 1180196



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>gb|AC102413.8| Mus musculus chromosome 3, clone RP24-462F18, complete sequence
          Length = 181851

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    attaacatggagaactctgac 69
             |||||||||||||||||||||
Sbjct: 94622 attaacatggagaactctgac 94642



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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
             complete sequence
          Length = 168569

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   ccatacatccatccaaacctg 162
             |||||||||||||||||||||
Sbjct: 10221 ccatacatccatccaaacctg 10201



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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
             complete sequence
          Length = 179432

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   ccatacatccatccaaacctg 162
             |||||||||||||||||||||
Sbjct: 46583 ccatacatccatccaaacctg 46563



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>emb|AL671992.5| Mouse DNA sequence from clone RP23-338G1 on chromosome X, complete
             sequence
          Length = 213940

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   tcccaaccaagaaaaagaaaa 138
             |||||||||||||||||||||
Sbjct: 46158 tcccaaccaagaaaaagaaaa 46138



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>gb|AC157939.15| Mus musculus chromosome 3, clone RP23-51P17, complete sequence
          Length = 240367

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    attaacatggagaactctgac 69
             |||||||||||||||||||||
Sbjct: 28307 attaacatggagaactctgac 28287



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>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete
             sequence
          Length = 150897

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   tcccaaccaagaaaaagaaaa 138
             |||||||||||||||||||||
Sbjct: 31050 tcccaaccaagaaaaagaaaa 31070



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>emb|BX470177.14| Zebrafish DNA sequence from clone DKEY-31F3 in linkage group 3,
             complete sequence
          Length = 59444

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aaaaagaaaacacccataca 148
             ||||||||||||||||||||
Sbjct: 51280 aaaaagaaaacacccataca 51261



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>gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosome 7, complete sequence
          Length = 204287

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    taattaattaattaacatgg 58
             ||||||||||||||||||||
Sbjct: 16774 taattaattaattaacatgg 16793



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>gb|AC146073.2| Pan troglodytes BAC clone RP43-15A16 from 7, complete sequence
          Length = 138338

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tggagaactctgacacatga 75
             ||||||||||||||||||||
Sbjct: 22370 tggagaactctgacacatga 22389



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>ref|XM_757903.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
            (TP03_0871) partial mRNA
          Length = 1989

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  cccaaccaagaaaaagaaaa 138
            ||||||||||||||||||||
Sbjct: 1256 cccaaccaagaaaaagaaaa 1275



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>ref|XM_757913.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
           (TP03_0881) partial mRNA
          Length = 1707

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 cccaaccaagaaaaagaaaa 138
           ||||||||||||||||||||
Sbjct: 980 cccaaccaagaaaaagaaaa 999



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>ref|XM_757916.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
            (TP03_0884) partial mRNA
          Length = 1989

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  cccaaccaagaaaaagaaaa 138
            ||||||||||||||||||||
Sbjct: 1256 cccaaccaagaaaaagaaaa 1275



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>ref|XM_758552.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0010) partial mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 cccaaccaagaaaaagaaaa 138
           ||||||||||||||||||||
Sbjct: 710 cccaaccaagaaaaagaaaa 729



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>emb|AL033521.2|HS444C7 Human DNA sequence from clone RP3-444C7 on chromosome 6p22.3-23 Contains
              the 5' end of a novel gene (FLJ20342), complete sequence
          Length = 128270

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     taattaattaattaacatggagaa 62
              ||||||||||||||| ||||||||
Sbjct: 100871 taattaattaattaagatggagaa 100894



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>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the
             3' end of the Col23a1 gene for procollagen (type XXIII,
             alpha 1), the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 155917

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aactctaattaattaattaa 53
             ||||||||||||||||||||
Sbjct: 44905 aactctaattaattaattaa 44924



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>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a
              general transcription factor II A, 1 (Gtf2a1) pseudogene,
              the 3' end of the Pkd1l1 gene for polycystic kidney disease
              1 like 1 and a heterogeneous nuclear ribonucleoprotein A3
              (Hnrpa3) pseudogene, complete sequence
          Length = 235198

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    aaaaagaaaacacccataca 148
              ||||||||||||||||||||
Sbjct: 106194 aaaaagaaaacacccataca 106175



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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aaaaagaaaacacccataca 148
             ||||||||||||||||||||
Sbjct: 23219 aaaaagaaaacacccataca 23238



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>emb|BX629355.3|CNS09SBR Tetraodon nigroviridis
          Length = 128373

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   accaagaaaaagaaaacacc 142
             ||||||||||||||||||||
Sbjct: 86695 accaagaaaaagaaaacacc 86714



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>gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, complete sequence
          Length = 169089

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   caaccaagaaaaagaaaaca 140
             ||||||||||||||||||||
Sbjct: 30789 caaccaagaaaaagaaaaca 30770



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>gb|AF190297.1|AF190297 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) gene,
            complete cds
          Length = 11604

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   aaactctaattaattaatta 52
            ||||||||||||||||||||
Sbjct: 1892 aaactctaattaattaatta 1873



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>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
             sequence
          Length = 162793

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tggagaactctgacacatga 75
             ||||||||||||||||||||
Sbjct: 38858 tggagaactctgacacatga 38877



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>gb|AC090493.4| Genomic sequence for Mus musculus, clone RP23-201D19,, complete sequence
          Length = 208651

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ctaattaattaattaacatg 57
              ||||||||||||||||||||
Sbjct: 104540 ctaattaattaattaacatg 104559



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>gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete
             sequence
          Length = 110619

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    aaactctaattaattaatta 52
             ||||||||||||||||||||
Sbjct: 67878 aaactctaattaattaatta 67897



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>gb|AF262041.1|T32B20 Arabidopsis thaliana BAC T32B20
          Length = 81877

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aaccaagaaaaagaaaacac 141
             ||||||||||||||||||||
Sbjct: 23602 aaccaagaaaaagaaaacac 23583



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>gb|AC135893.2| Homo sapiens 3 BAC RP11-643E20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165735

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    ctctaattaattaattaaca 55
             ||||||||||||||||||||
Sbjct: 53691 ctctaattaattaattaaca 53672



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>emb|BX005304.8| Mouse DNA sequence from clone RP23-328P5 on chromosome 2, complete
             sequence
          Length = 200574

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aactctaattaattaattaa 53
             ||||||||||||||||||||
Sbjct: 22241 aactctaattaattaattaa 22260



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>dbj|AP006656.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342a,
             complete sequence
          Length = 57652

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   aaccaagaaaaagaaaacac 141
             ||||||||||||||||||||
Sbjct: 14458 aaccaagaaaaagaaaacac 14439



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>emb|AL670953.5| Mouse DNA sequence from clone RP23-233H9 on chromosome X, complete
             sequence
          Length = 209986

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    aaactctaattaattaattaacat 56
             |||| |||||||||||||||||||
Sbjct: 54109 aaacactaattaattaattaacat 54132



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>emb|AL589650.20| Mouse DNA sequence from clone RP23-81H23 on chromosome 15, complete
             sequence
          Length = 197660

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ctaattaattaattaacatg 57
             ||||||||||||||||||||
Sbjct: 13460 ctaattaattaattaacatg 13479



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>emb|AL606509.6| Mouse DNA sequence from clone RP23-415B9 on chromosome 11, complete
              sequence
          Length = 197852

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     ataaactctaattaattaat 50
              ||||||||||||||||||||
Sbjct: 130693 ataaactctaattaattaat 130712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,371,706
Number of Sequences: 3902068
Number of extensions: 3371706
Number of successful extensions: 165135
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165012
Number of HSP's gapped (non-prelim): 121
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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