| Clone Name | rbaet02g11 |
|---|---|
| Clone Library Name | barley_pub |
>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1| Length = 355 Score = 102 bits (255), Expect = 3e-22 Identities = 52/79 (65%), Positives = 59/79 (74%) Frame = -2 Query: 420 PQFMGMAMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADADLEVD 241 P M DREARV RYREK+KMR+FEKTIRYASRKAYAE RPRIKGRFAK+ D D E + Sbjct: 277 PAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEAN 336 Query: 240 QYFSAAALSDSSCGVVPTF 184 Q FS D+ G+VP+F Sbjct: 337 QAFSTMITFDTGYGIVPSF 355
>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2| Length = 347 Score = 100 bits (249), Expect = 1e-21 Identities = 46/72 (63%), Positives = 60/72 (83%) Frame = -2 Query: 399 MDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADADLEVDQYFSAAA 220 M+REARV RYREK+K R+F+KTIRYASRKAYAE RPRIKGRFAKR + + E ++ FS + Sbjct: 276 MEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSL 335 Query: 219 LSDSSCGVVPTF 184 +S++ G+VP+F Sbjct: 336 MSETGYGIVPSF 347
>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5| Length = 355 Score = 93.2 bits (230), Expect = 2e-19 Identities = 50/76 (65%), Positives = 60/76 (78%), Gaps = 3/76 (3%) Frame = -2 Query: 402 AMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA---DLEVDQYF 232 +MDREARV RYREKRK R+FEKTIRYASRKAYAE+RPRIKGRFAKR + D+ + + Sbjct: 282 SMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVY 341 Query: 231 SAAALSDSSCGVVPTF 184 ++AA + GVVPTF Sbjct: 342 ASAA--HAQYGVVPTF 355
>CONS_ARATH (Q39057) Zinc finger protein CONSTANS| Length = 373 Score = 88.6 bits (218), Expect = 5e-18 Identities = 46/72 (63%), Positives = 57/72 (79%) Frame = -2 Query: 399 MDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADADLEVDQYFSAAA 220 MDREARV RYREKRK R+FEKTIRYASRKAYAE RPR+ GRFAKR + + E +Q F+ Sbjct: 304 MDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAE-EQGFNTML 361 Query: 219 LSDSSCGVVPTF 184 + ++ G+VP+F Sbjct: 362 MYNTGYGIVPSF 373
>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4| Length = 362 Score = 86.7 bits (213), Expect = 2e-17 Identities = 47/71 (66%), Positives = 51/71 (71%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADADLEVDQYFSAAAL 217 +REARV RYREKRK R+FEKTIRYASRKAYAE RPRIKGRFAKR D + D Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESNDVVGHGGIF 353 Query: 216 SDSSCGVVPTF 184 S G+VPTF Sbjct: 354 --SGFGLVPTF 362
>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3| Length = 294 Score = 82.4 bits (202), Expect = 4e-16 Identities = 40/47 (85%), Positives = 43/47 (91%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 +REARV RYREKRK R+FEKTIRYASRKAYAE RPRIKGRFAKR D+ Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274
>COL14_ARATH (O22800) Zinc finger protein CONSTANS-LIKE 14| Length = 402 Score = 63.9 bits (154), Expect = 1e-10 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = -2 Query: 405 MAMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRAD 259 MA +R+ + RY+EK+K RR++KTIRY +RKA AETR R+KGRF K D Sbjct: 353 MAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401
>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16| Length = 417 Score = 62.4 bits (150), Expect = 4e-10 Identities = 31/44 (70%), Positives = 33/44 (75%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 262 REARV RYREKR+ R F K IRY RK AE RPR+KGRF KRA Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404
>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15| Length = 433 Score = 61.6 bits (148), Expect = 7e-10 Identities = 28/50 (56%), Positives = 39/50 (78%) Frame = -2 Query: 405 MAMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 +A +R + RY+EKRK RR++KTIRY SRKA A+TR R++GRF K ++A Sbjct: 381 LAQNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASEA 430
>COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13| Length = 332 Score = 61.6 bits (148), Expect = 7e-10 Identities = 28/48 (58%), Positives = 38/48 (79%) Frame = -2 Query: 402 AMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRAD 259 +++R + + RY+EK+K RR+EK IRY SRK AE+R RI+GRFAK AD Sbjct: 284 SLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAAD 331
>COL8_ARATH (Q9M9B3) Putative zinc finger protein CONSTANS-LIKE 8| Length = 313 Score = 61.2 bits (147), Expect = 9e-10 Identities = 29/45 (64%), Positives = 35/45 (77%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 262 +REARV RYR+KRK R FEK IRY RK A+ RPR+KGRF +R+ Sbjct: 264 EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 308
>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6| Length = 406 Score = 61.2 bits (147), Expect = 9e-10 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 262 REARV RYREKR+ R F K IRY RK AE RPR+KGRF KR+ Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 400
>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7| Length = 392 Score = 60.8 bits (146), Expect = 1e-09 Identities = 30/44 (68%), Positives = 33/44 (75%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKR 265 +REARV RY+EKR+ R F K IRY RK AE RPRIKGRF KR Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
>COL9_ARATH (Q9SSE5) Zinc finger protein CONSTANS-LIKE 9| Length = 372 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/49 (53%), Positives = 36/49 (73%) Frame = -2 Query: 402 AMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 ++ R V RY+EK+K R+F+K +RYASRKA A+ R R+KGRF K +A Sbjct: 312 SVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA 360
>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73| (Pseudo-response regulator 73) (OsPRR73) Length = 767 Score = 55.5 bits (132), Expect = 5e-08 Identities = 24/52 (46%), Positives = 38/52 (73%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADADLEVDQ 238 REA ++++R+KRK+R F K +RY SRK AE RPRI+G+F +++ + + Q Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQ 763
>COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10| Length = 373 Score = 54.7 bits (130), Expect = 9e-08 Identities = 25/49 (51%), Positives = 33/49 (67%) Frame = -2 Query: 402 AMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 A R V RY+EK+K R+F+K +RY SRK A+ R R+KGRF K +A Sbjct: 313 ATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA 361
>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12| Length = 337 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/40 (62%), Positives = 30/40 (75%) Frame = -2 Query: 375 RYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 RY+EK+ R F K IRYASRKA A+TR R+KGRF K D+ Sbjct: 286 RYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDS 325
>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95| (Pseudo-response regulator 95) (OsPRR95) Length = 623 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/43 (55%), Positives = 33/43 (76%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKR 265 REA ++++R KRK R FEK +RY SRK AE RPR+KG+F ++ Sbjct: 574 REAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616
>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5| (Pseudo-response regulator 5) Length = 558 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/49 (48%), Positives = 35/49 (71%) Frame = -2 Query: 402 AMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 ++ REA + ++R KRK R +EK +RY SRK AE RPRIKG+F ++ + Sbjct: 506 SLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/47 (51%), Positives = 34/47 (72%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADAD 253 REA + ++R KRK R F+K +RY SRK AE RPR+KG+F + ++D Sbjct: 417 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463
>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7| (Pseudo-response regulator 7) Length = 727 Score = 52.4 bits (124), Expect = 4e-07 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADA 256 REA + ++R+KRK R F K +RY SRK AE RPR++G+F ++ A Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAA 714
>COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11| Length = 330 Score = 52.0 bits (123), Expect = 6e-07 Identities = 24/45 (53%), Positives = 31/45 (68%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRAD 259 R+ RY++K+ R F K IRYASRKA A+TR R+KGRF K + Sbjct: 276 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSGE 320
>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37| (Pseudo-response regulator 37) (OsPRR37) Length = 742 Score = 52.0 bits (123), Expect = 6e-07 Identities = 24/47 (51%), Positives = 33/47 (70%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRADAD 253 R A V ++R+KRK R F K +RY SRK AE RPR++G+F ++A D Sbjct: 682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQD 728
>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3| (Pseudo-response regulator 3) Length = 495 Score = 52.0 bits (123), Expect = 6e-07 Identities = 24/45 (53%), Positives = 32/45 (71%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRAD 259 REA + ++R KRK R FEK +RY SRK AE RP +KG+F ++ D Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKRD 486
>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1| (Pseudo-response regulator 1) (OsPRR1) Length = 518 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/45 (48%), Positives = 34/45 (75%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRAD 259 R A + ++R KRK R F+K +RY +RK AETRPR++G+F ++A+ Sbjct: 443 RAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQAN 487
>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1| (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) Length = 618 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKR 265 RE + ++R KR R F+K IRY +RK AE RPR+KG+F ++ Sbjct: 533 REEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRK 575
>GAT27_ARATH (Q8GXL7) GATA transcription factor 27 (ZIM-like 1 protein)| Length = 297 Score = 42.0 bits (97), Expect = 6e-04 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRF--AKRADAD 253 R A + R+REKRK R F+KTIRY RK A R KG+F AK ++ D Sbjct: 143 RLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDD 191
>GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 protein)| Length = 302 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRF 274 R A + R+REKRK R F+K IRY RK A R KG+F Sbjct: 147 RLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQF 186
>GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)| Length = 309 Score = 35.0 bits (79), Expect = 0.072 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Frame = -2 Query: 393 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRF--------AKRADADLEVDQ 238 R + R+R+KR R FEK +RY R+ A R KG+F A + D + Q Sbjct: 146 RAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQ 205 Query: 237 YFSAAALSDSSCGV 196 + +S + CG+ Sbjct: 206 DDAHPEISCTHCGI 219
>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGR 277 DR+ R H Y E+R+ RR + Y SR+ + +R R +G+ Sbjct: 54 DRQPRSHSY-ERRRRRRSSSSSSYGSRRKRSRSRSRGRGK 92
>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1| Length = 334 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -2 Query: 396 DREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGR 277 DR+ R H Y E+R+ RR + Y SR+ + +R R +G+ Sbjct: 54 DRQLRSHSY-ERRRRRRSSSSSSYGSRRKRSRSRSRGRGK 92
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 351 RRFEKTIRYASRKAYAETRP-RIKGRFAKRADADLEVDQYFSAAALSDSS 205 R +K I++A +K RP +I R R+ + D Y SAA+ +DSS Sbjct: 119 RTVKKQIQFADQKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSS 168
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -2 Query: 351 RRFEKTIRYASRKAYAETRP-RIKGRFAKRADADLEVDQYFSAAALSDSS 205 R +K I++A +K RP +I R R+ + D Y SAA+ +DSS Sbjct: 117 RTVKKQIQFADQKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSS 166
>SYK_CHLTE (Q8KCM7) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 511 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/61 (22%), Positives = 26/61 (42%) Frame = -2 Query: 342 EKTIRYASRKAYAETRPRIKGRFAKRADADLEVDQYFSAAALSDSSCGVVPTF*GGSVER 163 ++ +RY R P ++G F KR + YF++ + ++ GG+ R Sbjct: 171 DRELRYRQRYVDLIVNPEVRGTFIKRTKIVALMRNYFASNGWLEVETPILQPIYGGAAAR 230 Query: 162 P 160 P Sbjct: 231 P 231
>PURA1_PHOLL (Q7N8D4) Adenylosuccinate synthetase 1 (EC 6.3.4.4) (IMP--aspartate| ligase 1) (AdSS 1) (AMPSase 1) Length = 419 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -1 Query: 181 GRLGGETMSVPPSMVDRSTPACWLALLNLPNILNFTGGIKASPVNTKYSIMERCQIDL 8 G L G +P S+ ++ C AL++LP ++ IK +++ I RC I L Sbjct: 45 GNLRGSFSQLPASLNKKNLYICQGALISLPILVKEIDFIKKEDIDSHIFIDPRCHIVL 102
>YR186_MIMIV (Q5URB4) Putative transposase R186| Length = 482 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -2 Query: 411 MGMAMDREARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 262 M +DR + R+KRK R+ ++ +R + K Y + R RIK K A Sbjct: 298 MWRKIDRINFLLHNRKKRKKRKNDRRLRKSLAKYYRKIRQRIKDLHTKTA 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,480,797 Number of Sequences: 219361 Number of extensions: 777197 Number of successful extensions: 2286 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2284 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)