ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet02g06 |
|---|---|
| Clone Library Name | barley_pub |
>C74A1_ORYSA (Q7Y0C8) Cytochrome P450 74A1, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase 1) (Hydroperoxide dehydrase 1) Length = 512 Score = 67.4 bits (163), Expect = 8e-12 Identities = 32/41 (78%), Positives = 39/41 (95%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKATF 215 VL+ARLL+ E+FLRYDSF+V+VG+S LGSSVT+TSLKKATF Sbjct: 472 VLVARLLLVELFLRYDSFDVEVGTSTLGSSVTVTSLKKATF 512
>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 518 Score = 60.5 bits (145), Expect = 1e-09 Identities = 28/41 (68%), Positives = 36/41 (87%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKATF 215 VL+ARL V EIF RYDSF+++VG+SPLGSSV +SL+KA+F Sbjct: 478 VLVARLFVIEIFRRYDSFDIEVGTSPLGSSVNFSSLRKASF 518
>CP74_LINUS (P48417) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 536 Score = 57.8 bits (138), Expect = 7e-09 Identities = 25/41 (60%), Positives = 36/41 (87%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKATF 215 V+ ARL V E+F RYDSF+++VG+S LG+S+T+TSLK++TF Sbjct: 496 VMAARLFVVELFKRYDSFDIEVGTSSLGASITLTSLKRSTF 536
>C74A2_PARAR (Q40778) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase)| (Rubber particle protein) (RPP) Length = 473 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/40 (60%), Positives = 33/40 (82%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKAT 218 VLI RL V E+F RYDSF +++G SPLG++VT+T LK+A+ Sbjct: 433 VLITRLFVIELFRRYDSFEIELGESPLGAAVTLTFLKRAS 472
>C74A3_ORYSA (Q6Z6L1) Cytochrome P450 74A3 (EC 4.2.1.92) (Allene oxide synthase| 3) (Hydroperoxide dehydrase 3) Length = 500 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKAT 218 V + RL+VAE+F RYD+F V +P+ VT TSL +A+ Sbjct: 459 VAVGRLMVAELFRRYDTFAADVVEAPVEPVVTFTSLTRAS 498
>C74A4_ORYSA (Q6Z6K9) Cytochrome P450 74A4 (EC 4.2.1.92) (Allene oxide synthase| 4) (Hydroperoxide dehydrase 4) Length = 510 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/39 (48%), Positives = 24/39 (61%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKA 221 V + RL+VA +F RYD+F V PL VT TSL +A Sbjct: 461 VAVGRLMVAGLFRRYDTFAADVEELPLEPVVTFTSLTRA 499
>C74A2_ORYSA (Q7XYS3) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase| 2) (Hydroperoxide dehydrase 2) Length = 478 Score = 36.2 bits (82), Expect = 0.021 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = -2 Query: 337 VLIARLLVAEIFLRYDSFNVQVGSSPLGSSVTITSLKKAT 218 VL+ RLL+ E+FLRYD+F + G V IT + KA+ Sbjct: 436 VLVGRLLLVELFLRYDTFTAEA-----GKKVVITGVTKAS 470
>RBLL_ARCFU (O28685) Ribulose bisphosphate carboxylase-like protein| (RuBisCO-like protein) Length = 437 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = +2 Query: 2 GTNIIVHQGPWEKRPPGKEIFVTQILQHSMQVYHMHSVILVP 127 G +I+V+ P+ K P +E ++ QH YH+ +P Sbjct: 322 GADIVVYPAPYGKAPMMEEKYIEVAKQHRYPFYHIKPCFPMP 363
>HAS1_NEUCR (Q7S2N9) ATP-dependent RNA helicase has-1 (EC 3.6.1.-)| Length = 578 Score = 28.1 bits (61), Expect = 5.7 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = -2 Query: 151 FFSSALLDRY-----QYYTMHVIDLHGVLEDLCNKN-FFSWRPFFPGTLVNYDVCA 2 FFSS +Y QY + V+DLHG + N FF + GTL+ DV A Sbjct: 359 FFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAA 414
>FUT3_HUMAN (P21217) Galactoside 3(4)-L-fucosyltransferase (EC 2.4.1.65) (Blood| group Lewis alpha-4-fucosyltransferase) (Lewis FT) (Fucosyltransferase 3) (FUCT-III) Length = 361 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = -2 Query: 334 LIARLLVAEIFLRY--DSFNVQVGS--SPLGSSVTITSLKKATF*VLFWPWP 191 L+ +LLVA F Y S + GS +P GSS T+ + T +L W WP Sbjct: 20 LLFQLLVAVCFFSYLRVSRDDATGSPRAPSGSSRQDTTPTRPTLLILLWTWP 71
>ELMD1_PONPY (Q5NVD7) ELMO domain-containing protein 1| Length = 326 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 154 KYTWRCLWLLRRSATARKELRR 219 K+ WRCL + R T R EL+R Sbjct: 18 KFLWRCLKFVMRKLTGRCELQR 39
>DNAE2_MYCBO (Q7TWL9) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1091 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 19 SPRSLGKTASRKRNFCYTNPPTLHASLSHA*C-NTGTDREEQMKKIKY 159 SP+SL A +R+ + P ++ASL+HA C N GT+ + ++Y Sbjct: 825 SPQSL--VADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRY 870
>ELMD1_HUMAN (Q8N336) ELMO domain-containing protein 1| Length = 334 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 154 KYTWRCLWLLRRSATARKELRR 219 K+ WRCL + R T R EL+R Sbjct: 18 KFLWRCLKFVMRKLTGRCELQR 39
>DNAE2_MYCTU (O50399) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1098 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 19 SPRSLGKTASRKRNFCYTNPPTLHASLSHA*C-NTGTDREEQMKKIKY 159 SP+SL A +R+ + P ++ASL+HA C N GT+ + ++Y Sbjct: 832 SPQSL--VADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRY 877 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,009,130 Number of Sequences: 219361 Number of extensions: 862464 Number of successful extensions: 2027 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2027 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
