ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet02f12 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 210 bits (535), Expect = 1e-54 Identities = 101/101 (100%), Positives = 101/101 (100%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG Sbjct: 364 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 423 Query: 248 SFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 126 SFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 424 SFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 163 bits (412), Expect = 2e-40 Identities = 76/101 (75%), Positives = 89/101 (88%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNSR+GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G Sbjct: 374 VNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRG 433 Query: 248 SFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 126 +FYGKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 434 TFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 159 bits (402), Expect = 3e-39 Identities = 74/99 (74%), Positives = 87/99 (87%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS+DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G Sbjct: 372 VNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRG 431 Query: 248 SFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 132 +F+GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 432 TFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 157 bits (397), Expect = 1e-38 Identities = 76/103 (73%), Positives = 87/103 (84%), Gaps = 2/103 (1%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G Sbjct: 374 VNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRG 433 Query: 248 SFYGKGAQQ--GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 126 +FYG A Q G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 434 TFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 115 bits (288), Expect = 4e-26 Identities = 53/65 (81%), Positives = 61/65 (93%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG Sbjct: 361 VNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTG 420 Query: 248 SFYGK 234 +FYGK Sbjct: 421 AFYGK 425
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 112 bits (279), Expect = 5e-25 Identities = 52/64 (81%), Positives = 60/64 (93%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG Sbjct: 374 VNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTG 433 Query: 248 SFYG 237 +FYG Sbjct: 434 TFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 110 bits (275), Expect = 1e-24 Identities = 51/64 (79%), Positives = 60/64 (93%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNSR+GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTG Sbjct: 364 VNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTG 423 Query: 248 SFYG 237 SFYG Sbjct: 424 SFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 108 bits (269), Expect = 7e-24 Identities = 49/63 (77%), Positives = 60/63 (95%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTG Sbjct: 370 VNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTG 429 Query: 248 SFY 240 SF+ Sbjct: 430 SFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 104 bits (260), Expect = 8e-23 Identities = 48/62 (77%), Positives = 59/62 (95%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G Sbjct: 374 VNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRG 433 Query: 248 SF 243 +F Sbjct: 434 TF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 103 bits (256), Expect = 2e-22 Identities = 49/62 (79%), Positives = 57/62 (91%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 +NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 378 LNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 437 Query: 248 SF 243 +F Sbjct: 438 NF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 102 bits (254), Expect = 4e-22 Identities = 48/60 (80%), Positives = 56/60 (93%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 +NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 373 LNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 102 bits (254), Expect = 4e-22 Identities = 48/63 (76%), Positives = 56/63 (88%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 +NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ G Sbjct: 378 LNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNG 437 Query: 248 SFY 240 SF+ Sbjct: 438 SFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 100 bits (248), Expect = 2e-21 Identities = 44/63 (69%), Positives = 61/63 (96%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+G Sbjct: 376 VNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSG 435 Query: 248 SFY 240 SF+ Sbjct: 436 SFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 96.7 bits (239), Expect = 2e-20 Identities = 44/63 (69%), Positives = 58/63 (92%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 249 VNS++GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+G Sbjct: 378 VNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSG 437 Query: 248 SFY 240 SF+ Sbjct: 438 SFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 65.1 bits (157), Expect = 7e-11 Identities = 29/39 (74%), Positives = 36/39 (92%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 312 VNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 371 VNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 45.8 bits (107), Expect = 4e-05 Identities = 25/49 (51%), Positives = 32/49 (65%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 282 VN+R V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 347 VNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -2 Query: 428 VNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 300 VNS +GP F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 247 VNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 23) (DHHC-23) Length = 409 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = +1 Query: 199 PSGTGKVPCCAPLP*KEPVFIASWLASPRAAWLM*VSASCT-RLTLSCSWTSMCPYSSSF 375 P G+ K+P +P KE L P AW + C R+ C W + C S+ Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSCVGESNH 301 Query: 376 STVI 387 I Sbjct: 302 QAFI 305
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -2 Query: 419 RDGPVTFEQPKMTVEK 372 R+GP TFEQP MT+EK Sbjct: 17 REGPPTFEQPAMTIEK 32
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 30.0 bits (66), Expect = 2.4 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = +3 Query: 129 GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRVLVSITQSCLAHV 302 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ Q+C+ Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69 Query: 303 GVSKLHTLDIVLL 341 S T+ VLL Sbjct: 70 -ASIFETVGSVLL 81
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 2.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 304 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 408 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = -1 Query: 252 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 145 +FL R RS R AR R K Q LRPNG E+RR Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 347 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 180 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 347 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 180 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 347 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 180 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 347 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 180 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier| family 20 member 1) Length = 685 Score = 28.9 bits (63), Expect = 5.4 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = +3 Query: 111 KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRVLVSITQ 284 +V G++ ++ P W++VLG ++ F G + + SF GT++ +V++ Q Sbjct: 9 EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65 Query: 285 SCLAHVGVSKLHTLDIVLL 341 +C+ S T+ VLL Sbjct: 66 ACIL---ASIFETVGSVLL 81
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +2 Query: 143 CRRRSLPLGRSSWHFGRCNLP 205 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>BGS4_SCHPO (O74475) 1,3-beta-glucan synthase component bgs4 (EC 2.4.1.34)| (1,3-beta-D-glucan-UDP glucosyltransferase) Length = 1955 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = -2 Query: 347 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYD 168 V + N + Q AD Y ++ L A+ D+M YG+G P G T+ Y Sbjct: 28 VYDDQNAYQRQPADAYSNEEFLDQADYDSM-----YGEG--YNGYDYPTGVTESYGDEYT 80 Query: 167 PTARSDDGSCLYT 129 P + G Y+ Sbjct: 81 PVDTASSGINQYS 93
>TTUC1_AGRVI (Q44471) Probable tartrate dehydrogenase/decarboxylase ttuC (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 364 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 276 C*PGRDEDWFLLR*RSTARYFARAGRLHRPKCQEL 172 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC5_AGRVI (O34295) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 276 C*PGRDEDWFLLR*RSTARYFARAGRLHRPKCQEL 172 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC3_AGRVI (O34296) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 276 C*PGRDEDWFLLR*RSTARYFARAGRLHRPKCQEL 172 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)| (Polydeoxyribonucleotide synthase [ATP] 3) Length = 922 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -2 Query: 302 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNAKNY 171 Y+++ A+ D D + G+FYG+G++ G + + GC D ++ + Sbjct: 593 YLNEGAMADT-ADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKW 636 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,482,855 Number of Sequences: 219361 Number of extensions: 1127352 Number of successful extensions: 2883 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2882 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
