ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet02e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472744.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
2emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
3emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 50 0.005
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
5dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
6dbj|AK119220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
7dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
8dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
9dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
10dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
11dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
12dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
13gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete se... 44 0.28
14gb|AC092803.2| Homo sapiens chromosome 1 clone RP11-61J19, compl... 40 4.4
15gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 40 4.4
16gb|AC151414.2| Mus musculus BAC clone RP23-44E14 from 7, complet... 40 4.4 
>ref|XM_472744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1209 tcacttccactggttggcgacgatgtcggcgag 1177
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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
              complete sequence
          Length = 138969

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 301    tcacttccattggttggcgacaatgtcggcgag 333
              ||||||||| ||||||||||| |||||||||||
Sbjct: 122129 tcacttccactggttggcgacgatgtcggcgag 122097
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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
            complete sequence
          Length = 176383

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 7810 tcacttccactggttggcgacgatgtcggcgag 7778
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 301      tcacttccattggttggcgacaatgtcggcgag 333
                ||||||||| ||||||||||| |||||||||||
Sbjct: 22913354 tcacttccactggttggcgacgatgtcggcgag 22913322
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>dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D11, full
            insert sequence
          Length = 1468

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1245 tcacttccactggttggcgacgatgtcggcgag 1213
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>dbj|AK119220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H03, full
            insert sequence
          Length = 1366

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1245 tcacttccactggttggcgacgatgtcggcgag 1213
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>dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G03, full
            insert sequence
          Length = 1540

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1250 tcacttccactggttggcgacgatgtcggcgag 1218
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>dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F06, full
            insert sequence
          Length = 1538

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1250 tcacttccactggttggcgacgatgtcggcgag 1218
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>dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E09, full
            insert sequence
          Length = 1566

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1250 tcacttccactggttggcgacgatgtcggcgag 1218
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>dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B10, full
            insert sequence
          Length = 1473

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1250 tcacttccactggttggcgacgatgtcggcgag 1218
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>dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H17, full
            insert sequence
          Length = 1571

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 301  tcacttccattggttggcgacaatgtcggcgag 333
            ||||||||| ||||||||||| |||||||||||
Sbjct: 1246 tcacttccactggttggcgacgatgtcggcgag 1214
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>dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O22, full
           insert sequence
          Length = 778

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 301 tcacttccattggttggcgacaatgtcggcgag 333
           ||||||||| ||||||||||| |||||||||||
Sbjct: 465 tcacttccactggttggcgacgatgtcggcgag 433
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>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence
          Length = 164963

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 198   aatactttgaattctcattaca 219
             ||||||||||||||||||||||
Sbjct: 69908 aatactttgaattctcattaca 69929
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>gb|AC092803.2| Homo sapiens chromosome 1 clone RP11-61J19, complete sequence
          Length = 188345

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    agtcacttgacagggcaatg 284
              ||||||||||||||||||||
Sbjct: 137319 agtcacttgacagggcaatg 137338
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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 199   atactttgaattctcattacaaag 222
             |||||||||||||||||| |||||
Sbjct: 22226 atactttgaattctcatttcaaag 22203
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>gb|AC151414.2| Mus musculus BAC clone RP23-44E14 from 7, complete sequence
          Length = 190050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agatgcccagggttgagact 96
             ||||||||||||||||||||
Sbjct: 78651 agatgcccagggttgagact 78670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,739,822
Number of Sequences: 3902068
Number of extensions: 1739822
Number of successful extensions: 31891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31858
Number of HSP's gapped (non-prelim): 33
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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