ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet02d08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109334.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B09, full insert sequence Length = 1589 Score = 75.8 bits (38), Expect = 7e-11 Identities = 62/70 (88%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | |||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacatcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_466744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1574 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1339 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1280 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1279 ccggcgccgc 1270 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1460 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1417
>ref|XM_466743.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1136 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1077 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1076 ccggcgccgc 1067 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1257 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1214
>ref|XM_507509.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1586 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1351 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1292 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1291 ccggcgccgc 1282 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1472 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1429
>ref|XM_507508.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1631 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1352 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1293 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1292 ccggcgccgc 1283 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1473 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1430
>ref|XM_507507.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507506.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507505.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507504.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507503.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507502.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507501.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507500.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507499.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507498.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1592 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_507497.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1624 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>ref|XM_506867.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1590 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1358 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1299 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1298 ccggcgccgc 1289 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1479 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1436
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 24393555 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 24393496 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 24393495 ccggcgccgc 24393486 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 24393676 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 24393633
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 21761 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 21702 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 21701 ccggcgccgc 21692 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 21882 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 21839
>dbj|AK105020.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A05, full insert sequence Length = 1329 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1094 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1035 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1034 ccggcgccgc 1025 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1215 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1172
>dbj|AK119668.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H04, full insert sequence Length = 1631 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1352 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1293 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1292 ccggcgccgc 1283 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1473 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1430
>dbj|AK106124.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F02, full insert sequence Length = 1586 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1351 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1292 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1291 ccggcgccgc 1282 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1472 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1429
>dbj|AK106204.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F12, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104569.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G04, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104563.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D08, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104662.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E08, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104643.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G04, full insert sequence Length = 975 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 740 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 681 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 680 ccggcgccgc 671 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 861 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 818
>dbj|AK104632.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C05, full insert sequence Length = 1624 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104607.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B08, full insert sequence Length = 1016 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 757 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 698 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 697 ccggcgccgc 688 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 878 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 835
>dbj|AK104455.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A09, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104383.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C11, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H06, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E07, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK104284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A03, full insert sequence Length = 1574 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1339 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1280 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1279 ccggcgccgc 1270 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1460 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1417
>dbj|AK103939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G07, full insert sequence Length = 1589 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1354 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1295 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1294 ccggcgccgc 1285 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1475 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1432
>dbj|AK064829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F09, full insert sequence Length = 1591 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1359 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1300 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1299 ccggcgccgc 1290 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1480 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1437
>dbj|AK061687.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B02, full insert sequence Length = 1323 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1088 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1029 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1028 ccggcgccgc 1019 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1209 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1166
>dbj|AK060972.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D12, full insert sequence Length = 1371 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 1136 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 1077 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 1076 ccggcgccgc 1067 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 1257 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 1214
>dbj|AK059998.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G05, full insert sequence Length = 1043 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 ||||||| ||||| | ||||||| |||||||||||||||||||||| ||||||| || Sbjct: 766 ctcactcgtgcagggtggcgtacgtcacgtagctggagtagtccttgaccaccctgtccg 707 Query: 291 ccggcgccgc 300 |||||||||| Sbjct: 706 ccggcgccgc 697 Score = 42.1 bits (21), Expect = 1.00 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 146 tcacgtgcacaccaaacgcatacaagaatacaaagagcaaatacc 190 ||||| ||||| |||||| | |||||||||| ||||||||||||| Sbjct: 887 tcacgagcacaacaaacgaacacaagaatac-aagagcaaatacc 844
>gb|AY107303.1| Zea mays PCO142509 mRNA sequence Length = 946 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Minus Query: 231 ctcactcatgcagaggggcgtacaccacgtagctggagtagtccttggccaccctcgccc 290 |||| |||||||||| |||||| ||||||||||||||| |||||| || |||| ||| Sbjct: 699 ctcagtcatgcagagtagcgtacgtcacgtagctggagtaatccttgaccttcctctccc 640 Query: 291 ccggcgccgc 300 | |||||||| Sbjct: 639 ctggcgccgc 630
>emb|AL009051.1|HS747L4 Human DNA sequence from clone RP4-747L4 on chromosome 1q23-24 Contains a novel gene (LOC375035), the TBX19 gene for T-box 19 and a CpG island, complete sequence Length = 106319 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 acaccacgtagctggagtagt 272 ||||||||||||||||||||| Sbjct: 7484 acaccacgtagctggagtagt 7504
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 ttggccaccctcgcccccggc 295 ||||||||||||||||||||| Sbjct: 4025519 ttggccaccctcgcccccggc 4025499
>ref|XM_785758.1| PREDICTED: Strongylocentrotus purpuratus similar to THAP domain containing 9 (LOC585954), mRNA Length = 2508 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gctgtcacctcactcatgca 242 |||||||||||||||||||| Sbjct: 2123 gctgtcacctcactcatgca 2104
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tggccaccctcgcccccggc 295 |||||||||||||||||||| Sbjct: 1843321 tggccaccctcgcccccggc 1843302
>gb|AY040819.1| Galleria mellonella trypsin-like protein mRNA, complete cds Length = 993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 aagagcaaataccgacgacg 197 |||||||||||||||||||| Sbjct: 699 aagagcaaataccgacgacg 680
>gb|AY593845.1| Foot-and-mouth disease virus SAT 1 isolate sat1bot iso47, complete genome Length = 8175 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tacaagaatacaaagagcaa 185 |||||||||||||||||||| Sbjct: 570 tacaagaatacaaagagcaa 551 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,544,950 Number of Sequences: 3902068 Number of extensions: 2544950 Number of successful extensions: 44716 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44589 Number of HSP's gapped (non-prelim): 127 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
