ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet02d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 154 8e-38
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 104 9e-23
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 101 1e-21
4DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme... 34 0.20
5DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 32 1.0
6DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme... 31 1.7
7DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme... 30 2.3
8SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 6.6
9BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 28 8.6

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  154 bits (390), Expect = 8e-38
 Identities = 77/86 (89%), Positives = 81/86 (94%), Gaps = 2/86 (2%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKE 279
           DAEAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVESGHPLVKE
Sbjct: 310 DAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKE 367

Query: 278 GKLANLLAWRAEEDSLEE--GAVLCE 207
           GKLANLLAWRAEE+SLEE  GA+LCE
Sbjct: 368 GKLANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  104 bits (260), Expect = 9e-23
 Identities = 52/78 (66%), Positives = 62/78 (79%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKE 279
           +A+AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ +  P VKE
Sbjct: 317 NADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKE 375

Query: 278 GKLANLLAWRAEEDSLEE 225
           GKL NLL W   ED+LEE
Sbjct: 376 GKLGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score =  101 bits (251), Expect = 1e-21
 Identities = 51/80 (63%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
 Frame = -1

Query: 455 AEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKE 279
           AE YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES   P+ K+
Sbjct: 318 AEVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKD 375

Query: 278 GKLANLLAWRAEEDSLEEGA 219
            KLANLL W  E D++EE A
Sbjct: 376 YKLANLLCWEEEADAMEEKA 395



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>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303
           D + Y C+    Q L   G ++YQ F      A   GSPRS   C++ E+ E
Sbjct: 305 DVKGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 303
           D + Y C     Q L   G ++YQ F          GSPRS   C++ E+ E
Sbjct: 305 DVKGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352



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>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309
           D + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 307 DVKGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 362

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 458 DAEAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 309
           D + Y C     + L  GG ++Y  FT+      S GSPRS   C   EN
Sbjct: 307 DVKGYACGERSYEGLNKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 356 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 216
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = +3

Query: 204 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 368
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 369 FI--RGKALVDEDAPAGELLLHDVV 437
            +     A+ +   PAG  L H  V
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,466,006
Number of Sequences: 219361
Number of extensions: 1024958
Number of successful extensions: 3034
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3030
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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