ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet01h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OXAA_MYCCT (P43042) Membrane protein oxaA 28 4.2
2DSL1_YEAST (P53847) Protein transport protein DSL1 (Dependent on... 28 7.2
3PRLR_COLLI (Q90374) Prolactin receptor precursor (PRL-R) 27 9.4
4PRLR_MELGA (Q91094) Prolactin receptor precursor (PRL-R) (TPRLR) 27 9.4

>OXAA_MYCCT (P43042) Membrane protein oxaA|
          Length = 388

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 89  VISMFFLWVAVISMATGVCCYY 24
           V+ MF   + ++S+ATGVC Y+
Sbjct: 325 VVMMFVFIIIIVSVATGVCIYW 346



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>DSL1_YEAST (P53847) Protein transport protein DSL1 (Dependent on SLY1-20|
           protein 1)
          Length = 754

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   NSPNLIVAAHSSSHGNHC 62
           N  N++V + SSSHG HC
Sbjct: 228 NEKNILVFSKSSSHGQHC 245



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>PRLR_COLLI (Q90374) Prolactin receptor precursor (PRL-R)|
          Length = 830

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 YPTYSPSQRKKTIVQVRAGPAPHGTWT 296
           Y  +S +  KK IVQ+   P  HG+W+
Sbjct: 395 YKMFSLNPGKKYIVQIHCKPDHHGSWS 421



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>PRLR_MELGA (Q91094) Prolactin receptor precursor (PRL-R) (TPRLR)|
          Length = 831

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 216 YPTYSPSQRKKTIVQVRAGPAPHGTWT 296
           Y  +S +  KK IVQ+   P  HG+W+
Sbjct: 394 YKMFSLNPGKKYIVQIHCKPDHHGSWS 420


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,209,795
Number of Sequences: 219361
Number of extensions: 788931
Number of successful extensions: 1626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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