ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet01h08 |
|---|---|
| Clone Library Name | barley_pub |
>MTR_NEUCR (P38680) N amino acid transport system protein (Methyltryptophan| resistance protein) Length = 470 Score = 36.6 bits (83), Expect = 0.034 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = -1 Query: 453 MVSTLLAILMPFFNDILGFLGAIGFWPLTVYFPVEMYIR-QRGIQRYTTRWVALQTLSFL 277 +++ ++A +PFF+D+L A+ + YFP MY + R + + L L+ L Sbjct: 372 LIAWVIAEAIPFFSDLLAICSALFISGFSFYFPALMYFKITRNDAKSQGKKYFLDALNML 431 Query: 276 CFLVSL 259 CF++ + Sbjct: 432 CFVIGM 437
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/81 (22%), Positives = 40/81 (49%) Frame = -1 Query: 261 LAAAVASIEGVTESLKNYVPFKTKS*GWEFSHLVE*LVANNACFCSCVMMRNHRRLGASV 82 + A++ ++ + + L NY+ + GW F L + ++++N +C C+ R+ AS Sbjct: 162 IVQAISLLDDLDKELNNYIMRCREWYGWHFPELGK-IISDNLTYCKCLQKVGDRKNYAS- 219 Query: 81 GGLSRVTPGCAAQKLKEGRDL 19 LS + P ++K ++ Sbjct: 220 AKLSELLPEEVEAEVKAAAEI 240
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = -1 Query: 477 LTWRTAFVMVSTLLAILMPFFNDILGFLGAIGFWPLTVYFPVEMYIRQ---RGIQRYT-T 310 L+ RTA V V+ +LA+L+P + ++ +G++ L + P + + GI T T Sbjct: 375 LSARTAMVCVTCVLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGISPLTIT 434 Query: 309 RWVALQTLSFLCFLV 265 + + L F+ F+V Sbjct: 435 KDALISILGFVGFVV 449
>YMV2_CAEEL (P34504) Hypothetical protein K04H4.2 precursor| Length = 967 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -3 Query: 127 FMCDDEKPSSAGCVGG----GFIPCYAGLCCSETQGRERFID 14 F+C D ++ GCV G G+ C GLCC+ T + +D Sbjct: 487 FVCPDGTQAAGGCVNGQCGTGY-TCSNGLCCAGTSTTVKCLD 527
>NOP5_RAT (Q9QZ86) Nucleolar protein NOP5 (Nucleolar protein 5)| (Nopp140-associated protein) Length = 534 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/59 (23%), Positives = 31/59 (52%) Frame = -1 Query: 261 LAAAVASIEGVTESLKNYVPFKTKS*GWEFSHLVE*LVANNACFCSCVMMRNHRRLGAS 85 + A++ ++ + + L NY+ + GW F L + ++++N +C C+ R+ AS Sbjct: 162 IVQAISLLDDLDKELNNYIMRCREWYGWHFPELGK-IISDNLTYCKCLQKVGDRKNYAS 219
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 28.9 bits (63), Expect = 7.2 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Frame = -1 Query: 468 RTAFVMVSTLLAILMPFFNDILGFLGAIGFWPLTVYFPVEMYI---RQRGIQRYT-TRWV 301 RTA V V+ +LAIL+P + ++ +G++ L + P + + GI T T+ Sbjct: 378 RTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALIIPPLLEVVTYYGEGISPLTVTKDA 437 Query: 300 ALQTLSFLCFLV 265 + L F+ F+V Sbjct: 438 LISILGFVGFVV 449
>NLGN1_HUMAN (Q8N2Q7) Neuroligin-1 precursor| Length = 840 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = +2 Query: 89 APSRRWFLIITHEQKQALLA-----TNYSTRCENSHPHDLVL 199 +P R +TH Q++ +++ T+ CE+ HPH++VL Sbjct: 730 SPQRTTTNDLTHAQEEEIMSLQMKHTDLDHECESIHPHEVVL 771
>ARLY_NOCFA (Q5YYD2) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 473 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = -3 Query: 448 EHAARHPHALLQRHPRLPGRHRVLAAHRLLPRGDVHPAAGDTE 320 E AA HP A++ L VL AH LL HP D E Sbjct: 150 EQAAAHPDAVMPGKTHLQAAQPVLLAHHLL--AHAHPLLRDIE 190
>ATL1B_ARATH (Q9LM69) RING-H2 finger protein ATL1B| Length = 197 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +2 Query: 218 SDSVTPSMDATAAA--SDTRKQRKLSVCSATHLVVYLCIPRCRMY--ISTGK*TVSGQNP 385 S++ +P++D + AA SD +C+ ++ + + RC ++ G TVSG Sbjct: 12 SNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQT 71 Query: 386 MAPRKPRMSLKKGMR 430 +P+ P + KG++ Sbjct: 72 QSPQPPVAAANKGLK 86
>GATE_METTH (O26803) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)| (Glu-ADT subunit E) Length = 619 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 166 MRKLP-SSRLGLERDVVLERLRDALDGRHRRGERHQEAEEAERLQR 300 +R LP SSR+ LE D+ L R+ D L RR +E+ ER+ R Sbjct: 411 LRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMR 456
>BTUB_PHOLL (Q7MYE3) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 619 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -1 Query: 396 LGAIGFWPLTVYFPVEMYIRQR 331 LG + FW LTV +PV Y+ R Sbjct: 566 LGGVSFWDLTVSYPVTSYLTIR 587
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 28.5 bits (62), Expect = 9.4 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Frame = +1 Query: 148 DQLFHKMRKLPSSRLGLERDV-----VLERLRDALDGRHRRGERHQEAEEAERLQ 297 D+ K +KL SR+GLER + RL++ L+ R+GE Q ++E + ++ Sbjct: 364 DEEVKKRQKLEPSRVGLERQLEEKAEECHRLQELLE--RRKGEVQQSSKELQNMK 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,292,121 Number of Sequences: 219361 Number of extensions: 1294389 Number of successful extensions: 4106 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4105 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
