ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet01d02 |
|---|---|
| Clone Library Name | barley_pub |
>TIM22_MOUSE (Q9CQ85) Mitochondrial import inner membrane translocase subunit| Tim22 Length = 194 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 VE RG DWKN++I G TG + + K I GG A + YL Sbjct: 143 VESYRGKSDWKNSVISGCITGGAIGFRAGVKAGAIG----CGGFAAFSAAIDYYL 193
>TIM22_RAT (Q9JKW1) Mitochondrial import inner membrane translocase subunit| Tim22 Length = 192 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 VE RG DWKN++I G TG + + K I GG A + YL Sbjct: 141 VESYRGKSDWKNSVISGCITGGAIGFRAGVKAGAIG----CGGFAAFSAAIDYYL 191
>TIM22_HUMAN (Q9Y584) Mitochondrial import inner membrane translocase subunit| Tim22 (Testis-expressed sequence 4) Length = 194 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 +E RG DWKN++I G TG + + K I GG A + YL Sbjct: 143 IESYRGTSDWKNSVISGCITGGAIGFRAGLKAGAIG----CGGFAAFSAAIDYYL 193
>TIM22_BOVIN (Q5BIN4) Mitochondrial import inner membrane translocase subunit| Tim22 Length = 194 Score = 31.6 bits (70), Expect = 0.48 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 VE RG DWKN++I G TG + + K I GG A + YL Sbjct: 143 VESYRGKSDWKNSVISGCITGGAIGFRAGLKAGVIG----CGGFAAFSAAIDYYL 193
>TIM22_XENTR (Q5M7K0) Mitochondrial import inner membrane translocase subunit| Tim22 Length = 186 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALVSAASNNKGNKI 263 VE RG DWKN++I G TG + + K + Sbjct: 135 VESYRGKSDWKNSVISGCITGGAIGFRAGLKAGAL 169
>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor| (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin sulfate proteoglycan) (3H1 keratan sulfate proteoglycan) Length = 2316 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 125 GWLQSRSSYSVLSDKNIAADMASQLGEVVD-ELDGGRDGTSGDGVLGDLVPF 277 G +S + S+ K ++AD++ + + D +LD G D +SG VPF Sbjct: 555 GTAESLNMVSITEYKEVSADLSEEENLLTDFKLDSGADDSSGSSPASSTVPF 606
>TI17B_HUMAN (O60830) Mitochondrial import inner membrane translocase subunit| Tim17-B Length = 172 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -3 Query: 379 MEYGVERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 ++ G+ R+RG D N++ G TGA+++A S + A+ GG + +E + L Sbjct: 76 IDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLA--MVGSAMMGGILLALIEGVGIL 132
>TI17B_MOUSE (Q9Z0V7) Mitochondrial import inner membrane translocase subunit| Tim17-B Length = 172 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -3 Query: 379 MEYGVERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVEFINYL 203 ++ G+ R+RG D N++ G TGA+++A S + A+ GG + +E + L Sbjct: 76 IDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLA--MVGSAMMGGILLALIEGVGIL 132
>SGT1_YEAST (Q08446) Protein SGT1 (Suppressor of G2 allele of SKP1)| Length = 395 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/108 (23%), Positives = 46/108 (42%) Frame = +3 Query: 60 ERRQQKMEKHWRKQLQLLTHRVDGFSQEVLIQSCPIKTSPRIWPHS*VR*LMNSTAVAMA 239 ++++ KH K ++ + +R D S I I+T+P+ P + +ST+V ++ Sbjct: 140 KKQKDSTNKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKFKIDWYQSSTSVTIS 199 Query: 240 PPVMASWAILFPLLLLAAETRAPVAMPPINAFFQSRSPRTLSTPYSMP 383 LF + L P + +N + RTLS Y +P Sbjct: 200 ---------LFTVNL-------PESKEQVNIYISPNDRRTLSISYQVP 231
>TIM22_XENLA (Q5U4U5) Mitochondrial import inner membrane translocase subunit| Tim22 Length = 184 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 367 VERVRGDRDWKNALIGGIATGALV 296 VE RG DWKN+++ G TG + Sbjct: 133 VESYRGKSDWKNSVMSGCITGGAI 156
>GATA5_HUMAN (Q9BWX5) Transcription factor GATA-5 (GATA-binding factor 5)| Length = 397 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Frame = +2 Query: 224 GGRDGTSGDGVLGDLVPFVVARSRDQGTSCNASYQRIFPVTV----TTDPFH-SILH 379 GGRDG++ G L F R GTS +A+Y V T PF S+LH Sbjct: 109 GGRDGSAYQGALLPREQFAAPLGRPVGTSYSATYPAYVSPDVAQSWTAGPFDGSVLH 165
>ATG17_SCHPO (O42651) Autophagy-related protein 17| Length = 481 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -3 Query: 100 CFLQCFSIFCCRRSHVHVLNNLFYCV 23 C+++ +IF RR H +L+N F C+ Sbjct: 2 CYMRSLAIFQFRRKHTTLLHNQFLCI 27
>ATPE_SYNY3 (P26533) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 135 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Frame = -3 Query: 379 MEYGVERVRGDRDWKN-ALIGGIA 311 +E GV RVR +DW+N A++GG A Sbjct: 43 LEIGVMRVRPGKDWQNIAVMGGFA 66
>TGFA_MACMU (P55244) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) (Fragment) Length = 121 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 332 CVDRRHCNWCPGLCCEQQQ 276 C R+HC WC L C ++ Sbjct: 101 CQVRKHCEWCRALICRHEK 119
>PURA_BDEBA (Q6MN06) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 432 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%) Frame = +2 Query: 89 LEETAPIINTQGGWLQSRSSYSVLSD-----KNIAADMASQLGEVVDELDGG 229 LE+ P+I GW Q + LSD N + SQLG +D + G Sbjct: 366 LEKVEPVIEWIPGWTQDLTKVKTLSDLPRPTTNYIDYLGSQLGTPIDVISVG 417
>TOF1_YEAST (P53840) Topoisomerase 1-associated factor 1| Length = 1238 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +2 Query: 104 PIINTQGGWLQSRSSYSVLSDKNIAADMASQLGEVVDE 217 P+ N++ G+ Q Y+VL+++++ A ASQ + DE Sbjct: 767 PLHNSEVGFYQRYGEYNVLNNESMYAAPASQFKPIPDE 804
>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3| precursor Length = 556 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -3 Query: 295 SAASNNKGNKIAQDAITGGAIATAV 221 +AASNN+ N ++ ++GGAIA V Sbjct: 362 AAASNNRSNSTSKQRLSGGAIAGIV 386
>TGFA_PIG (Q06922) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 160 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 332 CVDRRHCNWCPGLCCEQQQ 276 C R+HC WC L C ++ Sbjct: 124 CQVRKHCEWCRALICRHEK 142
>TGFA_HUMAN (P01135) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 160 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 332 CVDRRHCNWCPGLCCEQQQ 276 C R+HC WC L C ++ Sbjct: 124 CQVRKHCEWCRALICRHEK 142
>PRP33_DAUCA (P06600) Proline-rich 33 kDa extensin-related protein precursor| (Fragment) Length = 211 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +1 Query: 298 PGHQLQCLLSTHFSSHGHHGPFPLHTPCLH 387 P H + H+ +H H P P+H P +H Sbjct: 111 PVHNTPSVTDDHYPAHPIHKPQPIHRPPVH 140
>PROP_PONPY (Q5RBP8) Properdin precursor (Factor P)| Length = 469 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Frame = -2 Query: 377 GVWSGKGPW*P*LEKC-----VDRRHCNW----CPGLCCEQQQREQ 267 G WSG GPW P C RR CN C G C Q Q + Sbjct: 137 GGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESE 182
>PROP_HUMAN (P27918) Properdin precursor (Factor P)| Length = 469 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Frame = -2 Query: 377 GVWSGKGPW*P*LEKC-----VDRRHCNW----CPGLCCEQQQREQ 267 G WSG GPW P C RR CN C G C Q Q + Sbjct: 137 GGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESE 182
>TGFA_RAT (P01134) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 159 Score = 28.1 bits (61), Expect = 5.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 332 CVDRRHCNWCPGLCCEQQQ 276 C R+HC WC L C ++ Sbjct: 123 CQVRKHCEWCRALVCRHEK 141
>Y493_HAEIN (O05023) Hypothetical transposase-like protein HI0493| Length = 118 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +2 Query: 59 RTPATKNGKTLEETAPIINTQGGWLQSRSSYSVLSDKNIAADMASQLGEVVD 214 RT TK K L+ PI+++ GWL Y + +N S+ G +D Sbjct: 23 RTQPTK--KDLKTQNPILHSDQGWLYQMVGYQAILRENSIQQNMSRKGNYLD 72
>TIM22_NEUCR (Q9C1E8) Mitochondrial import inner membrane translocase subunit| tim-22 Length = 194 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 Query: 382 GMEYGVERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATA 224 G+E G+E +R D N + G TGA++ + N G + A G A +A Sbjct: 132 GIECGIEGLRAKNDLGNGVAAGCLTGAIL---AKNGGPQAAAVGCAGFAAFSA 181
>Y423_MYCGE (P47662) Hypothetical protein MG423| Length = 561 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +2 Query: 110 INTQGGWLQSRSSYSVLSDKNIAADMASQLGEVVDEL 220 +NT G++ + VL+DKNIA + +QL +++ +L Sbjct: 151 LNTDNGYIVFIDDFIVLNDKNIAFE--NQLNQIIPKL 185
>TGFA_MOUSE (P48030) Transforming growth factor alpha precursor (TGF-alpha)| (EGF-like TGF) (ETGF) (TGF type 1) Length = 159 Score = 27.7 bits (60), Expect = 7.0 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 332 CVDRRHCNWCPGLCCEQQQ 276 C R+HC WC L C ++ Sbjct: 123 CQLRKHCEWCRALVCRHEK 141
>YLZ5_CAEEL (P34418) Hypothetical protein F42H10.5| Length = 810 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 161 SDKNIAADMASQLGEVVDELDGGRDG--TSGDGVLGDLVPFVVARSRD 298 SDK +A + S L V+ + DGG DG + + GDL + S + Sbjct: 651 SDKKLAMGVDSLLANVMRKNDGGSDGGCETALAIYGDLFQSITGNSSE 698
>POLS_CHIK3 (Q5XXP3) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1248 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/42 (26%), Positives = 18/42 (42%) Frame = +3 Query: 234 MAPPVMASWAILFPLLLLAAETRAPVAMPPINAFFQSRSPRT 359 + P W++ P+L L A T P + PP + P + Sbjct: 253 ITPEGAEEWSLALPVLCLLANTTFPCSQPPCTPCCYEKEPES 294
>EAR2_RAT (O09017) Orphan nuclear receptor EAR-2 (V-erbA-related protein| EAR-2) (Ovalbumin upstream promoter gamma nuclear receptor) (COUPg) Length = 390 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 256 PGRXXXXXXXXQQRPGHQLQCLLSTHFSSHGHHGPF 363 PG ++RPG Q+ C++ SS H+G F Sbjct: 37 PGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVF 72
>EAR2_MOUSE (P43136) Orphan nuclear receptor EAR-2 (V-erbA-related protein| EAR-2) Length = 390 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 256 PGRXXXXXXXXQQRPGHQLQCLLSTHFSSHGHHGPF 363 PG ++RPG Q+ C++ SS H+G F Sbjct: 37 PGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVF 72
>EAR2_HUMAN (P10588) Orphan nuclear receptor EAR-2 (V-erbA-related protein| EAR-2) Length = 404 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 256 PGRXXXXXXXXQQRPGHQLQCLLSTHFSSHGHHGPF 363 PG ++RPG Q+ C++ SS H+G F Sbjct: 36 PGAASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVF 71
>CP52B_CANTR (P30607) Cytochrome P450 52A2 (EC 1.14.14.-) (CYPLIIA2)| (Alkane-inducible P450-ALK2) Length = 522 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = +2 Query: 248 DGVLGDLVPFVVARSRDQGTSCNASYQRIF-----PVTVTTDPFHSIL 376 DG LG VPF + + +GT + +YQR + T P S+L Sbjct: 51 DGYLGFRVPFELMGKKSEGTLIDFTYQRTLELDNPDIPTFTFPIFSVL 98
>YAV3_XANCV (P14729) Hypothetical 65 kDa avirulence protein in avrBs3 region| Length = 591 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 289 QQRPGHQLQCLLSTHFSSHGHH 354 +Q+P H+LQ LL+T + GHH Sbjct: 496 RQQPLHRLQRLLATAIAGDGHH 517 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 289 QQRPGHQLQCLLSTHFSSHGHH 354 +Q+P H+LQ LL+T + GHH Sbjct: 462 RQQPLHRLQRLLATAIAGDGHH 483 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 289 QQRPGHQLQCLLSTHFSSHGHH 354 +Q+P H+LQ LL+T + GHH Sbjct: 428 RQQPLHRLQRLLATAIAGDGHH 449 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 289 QQRPGHQLQCLLSTHFSSHGHH 354 +Q+P H+LQ LL+T + GHH Sbjct: 224 RQQPLHRLQRLLATAIAGDGHH 245 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 289 QQRPGHQLQCLLSTHFSSHGHH 354 +Q+P H+LQ LL+T + GHH Sbjct: 156 RQQPLHRLQRLLATAIAGDGHH 177
>Y1338_SYMTH (Q67PS0) UPF0296 protein STH1338| Length = 95 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 278 VVARSRDQGTSCNASYQRIFPVTVTTDPFHSILHA 382 +++ +R++GT +A+Y R V TD H +L A Sbjct: 34 IISEARERGTLIDATYGRRTRAVVITDSDHVVLSA 68
>TI17A_RAT (O35092) Mitochondrial import inner membrane translocase subunit| Tim17-A (Inner membrane preprotein translocase Tim17a) Length = 171 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = -3 Query: 379 MEYGVERVRGDRDWKNALIGGIATGALVSAASNNKGNKIAQDAITGGAIATAVE 218 ++ G+ ++RG D N++ G TGA++ A+ N + A GG + +E Sbjct: 76 IDCGMVQIRGKEDPWNSITSGALTGAIL--AARNGPVAMVGSAAMGGILLALIE 127
>STCJ_EMENI (Q00681) Putative sterigmatocystin biosynthesis fatty acid synthase| alpha subunit Length = 1559 Score = 27.3 bits (59), Expect = 9.1 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +2 Query: 191 SQLGEVVDELDGGRDGTSGDGVLG--DLVPFVVARSRDQGTSCNASYQRIFPVTVTTDPF 364 SQ+G +D LD + ++ LV FVV++ R +G SC + Q + P++ P Sbjct: 552 SQVGAEIDGLDASNEAAFRLMLVNVLRLVGFVVSQKRRRGISCRPT-QVVLPLS----PN 606 Query: 365 HSIL 376 H IL Sbjct: 607 HGIL 610
>UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 728 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Frame = -3 Query: 361 RVRGDRDWKNALIGGIATGALVSAA-----SNNKGNKIAQDAI 248 RVRG R W + I TGALV A KG+ + ++ + Sbjct: 280 RVRGQRGWVTDKVEEITTGALVEHALQQLYGEEKGDAVPKEVL 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,139,924 Number of Sequences: 219361 Number of extensions: 992929 Number of successful extensions: 3437 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3437 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
