| Clone Name | rbaet01b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147925.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032N11 map near 50283S, complete sequence Length = 139217 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ggcgatgcatgcatgcatgc 50 |||||||||||||||||||| Sbjct: 111650 ggcgatgcatgcatgcatgc 111631
>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence Length = 200549 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 acatgcatggacgcatgcac 29 |||||||||||||||||||| Sbjct: 35417 acatgcatggacgcatgcac 35436
>gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome 9, complete sequence Length = 226770 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 gcatacatgcatggacgcatgcac 29 ||||||||||||| |||||||||| Sbjct: 80027 gcatacatgcatgcacgcatgcac 80050
>dbj|AB081624.1| Misgurnus anguillicaudatus DNA, microsatellite Mac43 Length = 390 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 atgcatgcatgccttgctttggtt 62 |||||||||||| ||||||||||| Sbjct: 249 atgcatgcatgcattgctttggtt 226
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgccttg 54 |||||||||||||||||||| Sbjct: 21858116 atgcatgcatgcatgccttg 21858135 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 24413833 atgcatgcatgcatgcctt 24413851 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 14942818 atgcatgcatgcatgcctt 14942800
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ggcgatgcatgcatgcatgc 50 |||||||||||||||||||| Sbjct: 14496816 ggcgatgcatgcatgcatgc 14496797 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 22733969 atgcatgcatgcatgcctt 22733951 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 15919857 gatgcatgcatgcatgcct 15919875 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 6598295 atgcatgcatgcatgcctt 6598277
>gb|AC118007.11| Mus musculus chromosome 9, clone RP23-377N5, complete sequence Length = 203921 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 acatgcatggacgcatgcac 29 |||||||||||||||||||| Sbjct: 91933 acatgcatggacgcatgcac 91952
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ggcgatgcatgcatgcatgc 50 |||||||||||||||||||| Sbjct: 14578817 ggcgatgcatgcatgcatgc 14578798 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 23043880 atgcatgcatgcatgcctt 23043862 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 16007233 gatgcatgcatgcatgcct 16007251 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 6664762 atgcatgcatgcatgcctt 6664744
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgccttg 54 |||||||||||||||||||| Sbjct: 21786461 atgcatgcatgcatgccttg 21786480 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 24342039 atgcatgcatgcatgcctt 24342057 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 14897101 atgcatgcatgcatgcctt 14897083
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgccttg 54 |||||||||||||||||||| Sbjct: 65216 atgcatgcatgcatgccttg 65197
>emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chromosome 9, complete sequence Length = 211707 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 gcatacatgcatggacgcatgcac 29 ||||||||||||| |||||||||| Sbjct: 19206 gcatacatgcatgcacgcatgcac 19229
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence Length = 139074 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 gcgatgcatgcatgcatgc 50 ||||||||||||||||||| Sbjct: 107243 gcgatgcatgcatgcatgc 107261
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 2862330 atgcatgcatgccttgctt 2862312
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 6447 atgcatgcatgcatgcctt 6429
>gb|AC105744.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0009C07, complete sequence Length = 124266 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 53798 atgcatgcatgcatgcctt 53816
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 30972 atgcatgcatgcatgcctt 30990
>gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome 16, complete sequence Length = 215559 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 121152 atgcatgcatgccttgctt 121170
>gb|AC159228.2| Mus musculus BAC clone RP24-338I14 from chromosome 13, complete sequence Length = 158726 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 catacatgcatggacgcatgcac 29 |||| |||||||||||||||||| Sbjct: 51826 catagatgcatggacgcatgcac 51804
>gb|AC159614.7| Mus musculus chromosome 1, clone RP24-305O23, complete sequence Length = 156924 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 7 catacatgcatggacgcatgcac 29 |||||||||||| |||||||||| Sbjct: 39455 catacatgcatgcacgcatgcac 39477
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 92455 gatgcatgcatgcatgcct 92473
>gb|AY532766.1| Zea diploperennis isolate d8 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532765.1| Zea diploperennis isolate d7 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532764.1| Zea diploperennis isolate d6 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532763.1| Zea diploperennis isolate d5 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532762.1| Zea diploperennis isolate d5b chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532761.1| Zea diploperennis isolate d4 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532760.1| Zea diploperennis isolate d3 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532758.1| Zea diploperennis isolate d1 chitinase (chiI) gene, complete cds Length = 1078 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 985 atgcatgcatgcatgcctt 1003
>gb|AY532752.1| Zea mays subsp. parviglumis isolate p12 chitinase (chiI) gene, complete cds Length = 1082 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 989 atgcatgcatgcatgcctt 1007
>gb|AY532747.1| Zea mays subsp. parviglumis isolate p5 chitinase (chiI) gene, complete cds Length = 1089 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 996 atgcatgcatgcatgcctt 1014
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence Length = 167239 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 111410 atgcatgcatgcatgcctt 111392
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 94769 atgcatgcatgcatgcctt 94751
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ggcgatgcatgcatgcatg 49 ||||||||||||||||||| Sbjct: 32940952 ggcgatgcatgcatgcatg 32940934 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gcgatgcatgcatgcatgc 50 ||||||||||||||||||| Sbjct: 28045864 gcgatgcatgcatgcatgc 28045846 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 24914569 atgcatgcatgcatgcctt 24914587 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 20973868 atgcatgcatgcatgcctt 20973886
>gb|U40829.1|YSCP9659 Saccharomyces cerevisiae chromosome XVI cosmid 9659 Length = 43281 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 22081 atgcatgcatgcatgcctt 22099
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 5287 atgcatgcatgcatgcctt 5269
>gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, complete sequence Length = 175873 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 137694 atgcatgcatgcatgcctt 137676
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ggcgatgcatgcatgcatg 49 ||||||||||||||||||| Sbjct: 49223 ggcgatgcatgcatgcatg 49241
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 116810 atgcatgcatgcatgcctt 116792
>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14, complete sequence Length = 158312 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 gcgatgcatgcatgcatgc 50 ||||||||||||||||||| Sbjct: 63710 gcgatgcatgcatgcatgc 63728
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 41795 atgcatgcatgcatgcctt 41813
>emb|AL662921.10| Mouse DNA sequence from clone RP23-397K10 on chromosome 11 Contains a CpG island, complete sequence Length = 141754 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 14083 gatgcatgcatgcatgcct 14101
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 57505 atgcatgcatgcatgcctt 57487
>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence Length = 139050 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 68996 atgcatgcatgcatgcctt 69014
>gb|AY860968.1| Sorghum bicolor yellow seed1 (y1) gene, y1-rr allele, complete cds; and y2 pseudogene, complete sequence Length = 22400 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 36 tgcatgcatgcatgccttgcttt 58 ||||||||||||||| ||||||| Sbjct: 21896 tgcatgcatgcatgctttgcttt 21918
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 27099152 atgcatgcatgcatgcctt 27099170 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 gcgatgcatgcatgcatgc 50 ||||||||||||||||||| Sbjct: 20001047 gcgatgcatgcatgcatgc 20001065 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 19024885 atgcatgcatgcatgcctt 19024867 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 202303 atgcatgcatgcatgcctt 202321
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 5727601 atgcatgcatgcatgcctt 5727583
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 atgcatggacgcatgcacc 30 ||||||||||||||||||| Sbjct: 7874095 atgcatggacgcatgcacc 7874077 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 5961836 atgcatgcatgcatgcctt 5961854
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 24758990 atgcatgcatgcatgcctt 24758972 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 3211171 atgcatgcatgcatgcctt 3211153 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 119173 gatgcatgcatgcatgcct 119155
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 25828640 gatgcatgcatgcatgcct 25828658
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 5319773 atgcatgcatgcatgcctt 5319755 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 3307080 atgcatgcatgcatgcctt 3307098
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ggcgatgcatgcatgcatg 49 ||||||||||||||||||| Sbjct: 33031462 ggcgatgcatgcatgcatg 33031444 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gcgatgcatgcatgcatgc 50 ||||||||||||||||||| Sbjct: 28137188 gcgatgcatgcatgcatgc 28137170 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 25005844 atgcatgcatgcatgcctt 25005862 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 20966897 atgcatgcatgcatgcctt 20966915
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 catgcatgcatgccttgct 56 ||||||||||||||||||| Sbjct: 27866031 catgcatgcatgccttgct 27866049 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 20280907 atgcatgcatgcatgcctt 20280925 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 8651476 atgcatgcatgccttgctt 8651494 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 3476984 atgcatgcatgcatgcctt 3476966
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 32875115 atgcatgcatgcatgcctt 32875097 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 32624198 atgcatgcatgcatgcctt 32624216 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 25999370 atgcatgcatgcatgcctt 25999352 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 25926090 atgcatgcatgcatgcctt 25926108 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 accggcgatgcatgcatgcatgc 50 |||||| |||||||||||||||| Sbjct: 1665505 accggccatgcatgcatgcatgc 1665483
>gb|AC008403.8| Homo sapiens chromosome 19 clone CTC-273B12, complete sequence Length = 190076 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ggcgatgcatgcatgcatg 49 ||||||||||||||||||| Sbjct: 103559 ggcgatgcatgcatgcatg 103577
>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0707D10 Length = 172003 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 95437 atgcatgcatgcatgcctt 95419 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 22157 atgcatgcatgcatgcctt 22175
>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0038D11 Length = 156465 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 2945 atgcatgcatgcatgcctt 2927
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 86993 atgcatgcatgcatgcctt 87011
>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0009N02 Length = 121142 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 120799 atgcatgcatgccttgctt 120817
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 accggcgatgcatgcatgcatgc 50 |||||| |||||||||||||||| Sbjct: 7848 accggccatgcatgcatgcatgc 7826
>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510C12 Length = 177049 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 166014 atgcatgcatgcatgcctt 166032
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 58523 atgcatgcatgccttgctt 58541
>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413G02 Length = 155633 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 96520 atgcatgcatgcatgcctt 96502
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 accggcgatgcatgcatgcatgc 50 |||||| |||||||||||||||| Sbjct: 102736 accggccatgcatgcatgcatgc 102714
>dbj|AP006727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0645D04 Length = 142890 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 72767 atgcatgcatgcatgcctt 72785
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 110844 gatgcatgcatgcatgcct 110862
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 atgcatggacgcatgcacc 30 ||||||||||||||||||| Sbjct: 121298 atgcatggacgcatgcacc 121280
>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455F03 Length = 158201 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 126161 atgcatgcatgcatgcctt 126143
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 114927 atgcatgcatgcatgcctt 114909
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 gatgcatgcatgcatgcct 52 ||||||||||||||||||| Sbjct: 118472 gatgcatgcatgcatgcct 118454
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 catgcatgcatgccttgct 56 ||||||||||||||||||| Sbjct: 151364 catgcatgcatgccttgct 151382
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17 Length = 141852 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 21779 atgcatgcatgcatgcctt 21761
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1661_C12 Length = 122214 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 89807 atgcatgcatgcatgcctt 89789
>dbj|AP005615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0006J22 Length = 145271 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 31712 atgcatgcatgcatgcctt 31730
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 20864 atgcatgcatgcatgcctt 20846
>gb|AC103664.12| Mus musculus chromosome 7, clone RP23-348F4, complete sequence Length = 222413 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 104317 atgcatgcatgcatgcctt 104299
>gb|AC131979.10| Mus musculus chromosome 16, clone RP24-156L5, complete sequence Length = 156267 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atgcatgcatgccttgctt 57 ||||||||||||||||||| Sbjct: 135842 atgcatgcatgccttgctt 135860
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 5728788 atgcatgcatgcatgcctt 5728770
>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103803 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 77365 atgcatgcatgcatgcctt 77383
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 174521 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 139029 atgcatgcatgcatgcctt 139047
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06, complete sequence Length = 145517 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 133590 atgcatgcatgcatgcctt 133608
>gb|AC173481.1| Mus musculus BAC clone RP23-411A24 from chromosome 13, complete sequence Length = 203948 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 7 catacatgcatggacgcatgcac 29 |||| |||||||||||||||||| Sbjct: 64138 catagatgcatggacgcatgcac 64160
>emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chromosome 2, complete sequence Length = 204136 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 83650 atgcatgcatgcatgcctt 83668
>emb|AL773592.5| Mouse DNA sequence from clone RP23-336B11 on chromosome 4, complete sequence Length = 219956 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgccttgctt 57 ||||||||||||||| ||||||| Sbjct: 166391 atgcatgcatgcatgacttgctt 166369
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 100904 atgcatgcatgcatgcctt 100922
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atgcatgcatgcatgcctt 53 ||||||||||||||||||| Sbjct: 56474 atgcatgcatgcatgcctt 56456 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,024,820 Number of Sequences: 3902068 Number of extensions: 1024820 Number of successful extensions: 137683 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133767 Number of HSP's gapped (non-prelim): 3908 length of query: 109 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 88 effective length of database: 17,151,101,840 effective search space: 1509296961920 effective search space used: 1509296961920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)