ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22b03 |
|---|---|
| Clone Library Name | barley_pub |
>BCHN_RHOS4 (Q9RFD4) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 428 Score = 35.8 bits (81), Expect = 0.054 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = +1 Query: 145 LGLCASHPIA---RRNGDVLSLHTGPGALIQERQGSGVAVTWPGACCACARACSPDLDAT 315 +G C S I R + LS H GP + GSG+ T+ AC + P L AT Sbjct: 112 VGSCPSEVIKLDLHRAAERLSAHHGPAVRVYNFSGSGIETTFTQGEDACLASIVPTLPAT 171 Query: 316 EVRSV 330 E R + Sbjct: 172 EAREL 176
>RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic hypocotyl| protein 3) Length = 745 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 379 GSKPDAFTRRGQAWFCTTGLPSDVTVE 459 G K D F RGQ+WF T +PSD+ V+ Sbjct: 32 GVKTDGFELRGQSWFVATDIPSDLLVK 58
>MKS1_YEAST (P34072) Negative regulator of RAS-cAMP pathway| Length = 584 Score = 32.0 bits (71), Expect = 0.78 Identities = 23/72 (31%), Positives = 36/72 (50%) Frame = -2 Query: 359 DPLQGQSVGGTDLTSVASKSGEHARAHAQHAPGQVTATPEPCLS*INAPGPVWSERTSPL 180 DP++ + G L+ S S H AH+++A V+ TP+ S I P P ++ P Sbjct: 364 DPVRKSLLSGLFLSEANSNSNNHNTAHSEYASKHVSPTPQSSHSNI-GPQP---QQNPP- 418 Query: 179 RRAMGCEAQRPS 144 A G + Q+PS Sbjct: 419 -SANGIKQQKPS 429
>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 121 kDa) (AKAP 121) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protei Length = 854 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 307 PNPASTHARTHSTPQAR*PPPRSLVSLESTP 215 P+PAST ++P A PPP++ VS S+P Sbjct: 363 PDPASTRTGATASPSAGAPPPKTYVSCLSSP 393
>PGRP2_MOUSE (Q8VCS0) N-acetylmuramoyl-L-alanine amidase precursor (EC 3.5.1.28)| (Peptidoglycan recognition protein long) (PGRP-L) (Peptidoglycan recognition protein 2) (TagL) Length = 530 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/87 (25%), Positives = 31/87 (35%) Frame = +1 Query: 160 SHPIARRNGDVLSLHTGPGALIQERQGSGVAVTWPGACCACARACSPDLDATEVRSVPPT 339 +H +A D L++ G + + + TWPG A A SPD+ AT T Sbjct: 137 AHSVANLPSDCLAIPCDTGDTL-----ANIRATWPGLMDAFPNASSPDVGATLPNDKAKT 191 Query: 340 LCPCKGSMGSLKLGSKPDAFTRRGQAW 420 + G F R Q W Sbjct: 192 PTTVDRLLAITLAGDLGLTFLHRSQTW 218
>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic| hypocotyl 3-like protein) (NPH3-like protein) Length = 762 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 355 GSMGSLKLGSKPDAFTRRGQAWFCTTGLPSDVTVE 459 G G + K D F RR ++W+ + +PSD+ V+ Sbjct: 22 GGSGRHEAALKNDGFVRRDRSWYVNSDIPSDLLVK 56
>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology| domain-containing protein 4 (Leucine-rich neuronal protein) Length = 683 Score = 30.8 bits (68), Expect = 1.7 Identities = 27/96 (28%), Positives = 37/96 (38%) Frame = -2 Query: 425 QNHAWPRLVKASGLEPSLREPMDPLQGQSVGGTDLTSVASKSGEHARAHAQHAPGQVTAT 246 Q+ AW K S L+P LR + S S S + + A Q AP A+ Sbjct: 421 QSGAWGAPRKDSLLKPGLRAVVGGAAAVSTQAMHNGSPKSSASQAGAAAGQGAPAPAPAS 480 Query: 245 PEPCLS*INAPGPVWSERTSPLRRAMGCEAQRPSFL 138 EP P+ T+P R +G + SFL Sbjct: 481 QEPL--------PIAGPATAPAPRPLGSIQRPNSFL 508
>T7L1D_XENLA (P70064) Transcription factor 7-like 1-D (HMG box transcription| factor 3-D) (TCF-3-D) (xTcf-3d) Length = 550 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 107 HPQLHCPQKSRESSAFAPHIPSPVAMVMFSRSIP 208 H KS SS+ + H+PSPV + SR IP Sbjct: 482 HSAAFLASKSPSSSSLSGHLPSPVGSPLLSRPIP 515
>T7L1C_XENLA (P70063) Transcription factor 7-like 1-C (HMG box transcription| factor 3-C) (TCF-3-C) (xTcf-3c) Length = 550 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 107 HPQLHCPQKSRESSAFAPHIPSPVAMVMFSRSIP 208 H KS SS+ + H+PSPV + SR IP Sbjct: 482 HSAAFLASKSPSSSSLSGHLPSPVGASLLSRPIP 515
>T7L1B_XENLA (Q90ZB6) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) (xTcf-3) Length = 551 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 107 HPQLHCPQKSRESSAFAPHIPSPVAMVMFSRSIP 208 H KS SS+ + H+PSPV + SR IP Sbjct: 483 HSAAFLASKSPSSSSLSGHLPSPVGSPLLSRPIP 516
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -3 Query: 316 PWRPNPASTHARTHSTPQAR*PPPR 242 P P P STH TH+ Q PPPR Sbjct: 106 PKTPEPRSTHTHTHTHSQHFSPPPR 130
>GLGA_AZOSE (Q5NXZ7) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 494 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 348 LQRIHGLPQARLQAGRLHQARPSMVL 425 ++ HGLP ARL GRL P++VL Sbjct: 69 IRSAHGLPSARLLRGRLPSGVPALVL 94
>RPOA_PRRSL (Q04561) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3859 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 166 PIARRNGDVLSLHTGPGALIQERQGSGVAVTWPGACCACARACSPDL 306 P+ +GD++ +HTG L GSG+ T G C DL Sbjct: 1813 PVISESGDLIGIHTGSNKL-----GSGLVTTPEGETCTIKETKLSDL 1854
>KCC2B_HUMAN (Q13554) Calcium/calmodulin-dependent protein kinase type II beta| chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM kinase II beta subunit) (CaMK-II beta subunit) Length = 664 Score = 28.9 bits (63), Expect = 6.6 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Frame = -2 Query: 365 PMDPLQGQSVGGTD-LTSVASKSGEHARAHAQHAPGQVTATPEPCLS-----*INAPGPV 204 P PL S +D L SV SG A G ++A P PCLS +++P P Sbjct: 438 PFSPLPAPSPRISDILNSVRRGSG------TPEAEGPLSAGPPPCLSPALLGPLSSPSPR 491 Query: 203 WSERTSPLRRAMGC-EAQRP 147 S+ + +RR G EA+ P Sbjct: 492 ISDILNSVRRGSGTPEAEAP 511
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/61 (31%), Positives = 26/61 (42%) Frame = +1 Query: 238 GSGVAVTWPGACCACARACSPDLDATEVRSVPPTLCPCKGSMGSLKLGSKPDAFTRRGQA 417 G TW A C+ A +P D+ +V PT C C K G+KP+ G+ Sbjct: 1420 GCNAGRTWDDATCSEKCAATPKCDSPKV--FDPTTCGC-------KCGNKPNKLD-AGRT 1469 Query: 418 W 420 W Sbjct: 1470 W 1470
>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) Length = 809 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/53 (28%), Positives = 18/53 (33%) Frame = +1 Query: 226 QERQGSGVAVTWPGACCACARACSPDLDATEVRSVPPTLCPCKGSMGSLKLGS 384 QE G V P C C SP + PP P + + LGS Sbjct: 714 QEEHGEAHTVASPCCGCCCGDRSSPPVSPVRALDPPPGGVPLEAGLSLASLGS 766
>Y4479_BORBR (Q7WF01) UPF0271 protein BB4479| Length = 252 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +3 Query: 294 LAGFGRHGSQIRPSHA--LSLQRIHGLP-QARLQAGRLHQARPSMVLHNRTSQ 443 LAGFGR QI P A L + ++ L A Q RLH + L+N ++ Sbjct: 70 LAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQGARLHHVKAHGALYNMAAK 122
>Y4006_BORPA (Q7W3M5) UPF0271 protein BPP4006| Length = 252 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +3 Query: 294 LAGFGRHGSQIRPSHA--LSLQRIHGLP-QARLQAGRLHQARPSMVLHNRTSQ 443 LAGFGR QI P A L + ++ L A Q RLH + L+N ++ Sbjct: 70 LAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQGARLHHVKAHGALYNMAAK 122
>Y150_BORPE (O30444) UPF0271 protein BP0150| Length = 252 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +3 Query: 294 LAGFGRHGSQIRPSHA--LSLQRIHGLP-QARLQAGRLHQARPSMVLHNRTSQ 443 LAGFGR QI P A L + ++ L A Q RLH + L+N ++ Sbjct: 70 LAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQGARLHHVKAHGALYNMAAK 122
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 28.5 bits (62), Expect = 8.6 Identities = 22/73 (30%), Positives = 25/73 (34%) Frame = +1 Query: 211 PGALIQERQGSGVAVTWPGACCACARACSPDLDATEVRSVPPTLCPCKGSMGSLKLGSKP 390 P L E G P AC C PD + VP C CK + G L K Sbjct: 2955 PSCLDSEGHCEGSTTKAPSACQEGC-VCEPDYVVLNNKCVPRIECGCKDAQGVLIPADK- 3012 Query: 391 DAFTRRGQAWFCT 429 + RG CT Sbjct: 3013 -TWINRGCTQSCT 3024 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,912,920 Number of Sequences: 219361 Number of extensions: 1448543 Number of successful extensions: 4797 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
