ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79h05 |
|---|---|
| Clone Library Name | barley_pub |
>C74A2_ORYSA (Q7XYS3) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase| 2) (Hydroperoxide dehydrase 2) Length = 478 Score = 188 bits (477), Expect = 6e-48 Identities = 87/101 (86%), Positives = 97/101 (96%) Frame = +3 Query: 156 REVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRVV 335 R VPGSYG+PFVSA+RDRLDFYY QGQDKYFESR E+YGSTVVRINVPPGPFMARDPRVV Sbjct: 10 RPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPGPFMARDPRVV 69 Query: 336 AVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFRVCS 458 A+LDAKSFPVLFDV KVEK+++FTGT+MPSTSLTGG+RVC+ Sbjct: 70 ALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCA 110
>CP74_LINUS (P48417) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 536 Score = 156 bits (395), Expect = 2e-38 Identities = 70/109 (64%), Positives = 94/109 (86%) Frame = +3 Query: 132 SDEGSLVPREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPF 311 SDE +L R++PG YGLP + I+DRLD++Y QG++++F+SR++KY STV R N+PPGPF Sbjct: 65 SDETTLPIRQIPGDYGLPGIGPIQDRLDYFYNQGREEFFKSRLQKYKSTVYRANMPPGPF 124 Query: 312 MARDPRVVAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFRVCS 458 +A +PRV+ +LDAKSFPVLFD++KVEKK+LFTGTYMPST LTGG+R+ S Sbjct: 125 IASNPRVIVLLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILS 173
>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 518 Score = 149 bits (377), Expect = 3e-36 Identities = 68/110 (61%), Positives = 88/110 (80%) Frame = +3 Query: 129 RSDEGSLVPREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGP 308 R+ L R +PG+YGLP V I+DR D++Y QG +++F+SR+ KY STV R+N+PPG Sbjct: 46 RTGSKDLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGA 105 Query: 309 FMARDPRVVAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFRVCS 458 F+A +P+VVA+LD KSFPVLFDV KVEKK+LFTGTYMPST LTGG+R+ S Sbjct: 106 FIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILS 155
>C74A2_PARAR (Q40778) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase)| (Rubber particle protein) (RPP) Length = 473 Score = 147 bits (371), Expect = 1e-35 Identities = 68/109 (62%), Positives = 89/109 (81%), Gaps = 1/109 (0%) Frame = +3 Query: 135 DEGSLVPREVPGSYGLPFVSAIRDRLDFYYFQG-QDKYFESRVEKYGSTVVRINVPPGPF 311 D S RE+PGSYG+PF I+DRL+++Y G +D+YF SR++KY STV R N+PPGPF Sbjct: 2 DPSSKPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPF 61 Query: 312 MARDPRVVAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFRVCS 458 ++ +P+V+ +LDAKSFP+LFDV+KVEKK+LFTGTYMPST LTG +RV S Sbjct: 62 VSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGAYRVLS 110
>C74A1_ORYSA (Q7Y0C8) Cytochrome P450 74A1, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase 1) (Hydroperoxide dehydrase 1) Length = 512 Score = 137 bits (344), Expect = 2e-32 Identities = 66/102 (64%), Positives = 83/102 (81%), Gaps = 1/102 (0%) Frame = +3 Query: 156 REVPGSYGLPFVSAIRDRLDFYYFQG-QDKYFESRVEKYGSTVVRINVPPGPFMARDPRV 332 R+VPG YG P V AIRDR +++Y G +D +F +RV + STVVR+N+PPGPF+ARDPRV Sbjct: 48 RKVPGDYGPPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPGPFVARDPRV 107 Query: 333 VAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFRVCS 458 VA+LDA SFPVLFD + V+K +LFTGT+MPST LTGG+RV S Sbjct: 108 VALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLS 149
>C74A4_ORYSA (Q6Z6K9) Cytochrome P450 74A4 (EC 4.2.1.92) (Allene oxide synthase| 4) (Hydroperoxide dehydrase 4) Length = 510 Score = 134 bits (338), Expect = 8e-32 Identities = 62/111 (55%), Positives = 86/111 (77%), Gaps = 1/111 (0%) Frame = +3 Query: 120 GMARSDEGSLVPREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYG-STVVRINV 296 G ++ L+ RE+PG YG+PF+S +RDRLD+YYFQG D++F SRV ++G +TV+R+N+ Sbjct: 18 GQSKLSPSGLLIREIPGGYGVPFLSPLRDRLDYYYFQGADEFFRSRVARHGGATVLRVNM 77 Query: 297 PPGPFMARDPRVVAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFR 449 PPGPF+A DPRVVA+LDA+SF VL D + V+K + GT+MPS +L GG R Sbjct: 78 PPGPFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHR 128
>C74A3_ORYSA (Q6Z6L1) Cytochrome P450 74A3 (EC 4.2.1.92) (Allene oxide synthase| 3) (Hydroperoxide dehydrase 3) Length = 500 Score = 127 bits (319), Expect = 1e-29 Identities = 58/99 (58%), Positives = 80/99 (80%), Gaps = 1/99 (1%) Frame = +3 Query: 156 REVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYG-STVVRINVPPGPFMARDPRV 332 RE+PG YG+PF S +RDRLD++YFQG ++YF SRV ++G +TV+R+N+PPGPF++ +PRV Sbjct: 30 REIPGGYGVPFFSPLRDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPGPFISGNPRV 89 Query: 333 VAVLDAKSFPVLFDVTKVEKKNLFTGTYMPSTSLTGGFR 449 VA+LDA+SF VL D + V+K + GTYMPS +L GG R Sbjct: 90 VALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHR 128
>TRPC_XANCP (Q8PD70) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 265 Score = 32.3 bits (72), Expect = 0.59 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +3 Query: 153 PREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRV 332 P ++ SY S + D Y+FQG D Y + E V+R + P+ + RV Sbjct: 76 PADIAVSYEFGGASCLSVLTDMYFFQGSDAYLQQAREACTLPVLRKDFTVDPYQVYEARV 135 Query: 333 V 335 + Sbjct: 136 L 136
>CP131_DROME (Q9VFJ0) Probable cytochrome P450 313a1 (EC 1.14.-.-)| (CYPCCCXIIIA1) Length = 492 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +3 Query: 159 EVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRVV 335 ++PG GLP + + + + Y + + + + KYGST++ P + RDP+VV Sbjct: 31 KIPGPIGLPILGSSLENIITY--KRKLSFRTKYLNKYGSTILTWMGPVPFIVTRDPKVV 87
>SPC34_SCHPO (O14285) DASH complex subunit spc34 (Outer kinetochore protein| spc34) Length = 164 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 186 FVSAIRDRLDFYYFQGQDKYFESRVEKY 269 +V+ I + LD Y QG +Y E+ VEKY Sbjct: 75 YVACIEELLDIYPMQGGREYLETLVEKY 102
>CTLA4_CANFA (Q9XSI1) Cytotoxic T-lymphocyte protein 4 precursor (Cytotoxic| T-lymphocyte-associated antigen 4) (CTLA-4) (CD152 antigen) Length = 223 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 397 FFFSTLVTSKSTGKLLASSTATTRGSRAMKGPGGTLMRTTVEPYF 263 FF+S L+T+ S K+L + T G P G +PYF Sbjct: 175 FFYSFLITAVSLSKMLKKRSPLTTGVYVKMPPTGPECEKQFQPYF 219
>C90A1_ARATH (Q42569) Cytochrome P450 90A1 (EC 1.14.-.-)| Length = 472 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +3 Query: 165 PGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGS 275 PGS GLP + + Y + + + + RV +YGS Sbjct: 33 PGSLGLPLIGETFQLIGAYKTENPEPFIDERVARYGS 69
>GBRB3_DROME (Q08832) Gamma-aminobutyric-acid receptor beta-like subunit| precursor (GABA(A) receptor) Length = 496 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/82 (24%), Positives = 35/82 (42%) Frame = +3 Query: 171 SYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRVVAVLDA 350 +YG+ F + + +D +Y+ + +E YG TV + + P R V + Sbjct: 165 TYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVMYWKPTPVRG---VEDAEL 221 Query: 351 KSFPVLFDVTKVEKKNLFTGTY 416 F ++ T K+ L TG Y Sbjct: 222 PQFTIIGYETNDRKERLATGVY 243
>TRPC_XYLFT (Q87EX2) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 264 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = +3 Query: 153 PREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRV 332 P E+ SY L S + D ++F+G D Y + V+R + P+ + RV Sbjct: 76 PAEIAISYELGGASCLSVLTDVHFFKGHDDYLSQARDACTLPVLRKDFTIDPYQVYEARV 135 Query: 333 V 335 + Sbjct: 136 L 136
>TRPC_XYLFA (Q9PGT5) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 264 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = +3 Query: 153 PREVPGSYGLPFVSAIRDRLDFYYFQGQDKYFESRVEKYGSTVVRINVPPGPFMARDPRV 332 P E+ SY L S + D ++F+G D Y + V+R + P+ + RV Sbjct: 76 PAEIAISYELGGASCLSVLTDVHFFKGHDDYLSQARDACTLPVLRKDFTIDPYQVYEARV 135 Query: 333 V 335 + Sbjct: 136 L 136
>RRMJ_METMA (Q8PUP4) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 268 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 13/51 (25%) Frame = +3 Query: 201 RDRLDFYYFQGQDKYFESR-------------VEKYGSTVVRINVPPGPFM 314 RDR D+YY Q +++ + SR V K G +VV + PG ++ Sbjct: 3 RDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWL 53
>RRMJ_METAC (Q8TR92) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 272 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 13/51 (25%) Frame = +3 Query: 201 RDRLDFYYFQGQDKYFESR-------------VEKYGSTVVRINVPPGPFM 314 RDR D+YY Q +++ + SR V K G +VV + PG ++ Sbjct: 3 RDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWL 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.127 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,298,188 Number of Sequences: 219361 Number of extensions: 583442 Number of successful extensions: 1958 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1951 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
