| Clone Name | bast79g10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550443.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1453 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Plus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 420 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 479 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 480 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 539 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 540 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 599 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 600 acgacgacgacga 612 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 315 gaggacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaag 374 |||||||||||||| || |||| |||||| | ||||| ||||| |||| || |||||| Sbjct: 785 gaggacaacaccgctggatgcgtcgccattagaaaggcttttgcattgggcaatggcaag 844 Query: 375 gggaaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagg 434 | ||| ||||| ||||| || ||||| || || |||| |||||| ||||||||||| Sbjct: 845 gcaaagaagaaggaactgtccccacaggatgcggcattgctgatccagttgaactacagg 904 Query: 435 gcgcacctcgcccaccgttcccaggtgctccgctgcct 472 || ||||| || |||||||| |||||||| |||||||| Sbjct: 905 gctcacctggcacaccgttcacaggtgcttcgctgcct 942
>ref|XM_550442.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1819 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Plus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 485 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 544 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 545 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 604 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 605 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 664 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 665 acgacgacgacga 677 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 315 gaggacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaag 374 |||||||||||||| || |||| |||||| | ||||| ||||| |||| || |||||| Sbjct: 850 gaggacaacaccgctggatgcgtcgccattagaaaggcttttgcattgggcaatggcaag 909 Query: 375 gggaaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagg 434 | ||| ||||| ||||| || ||||| || || |||| |||||| ||||||||||| Sbjct: 910 gcaaagaagaaggaactgtccccacaggatgcggcattgctgatccagttgaactacagg 969 Query: 435 gcgcacctcgcccaccgttcccaggtgctccgctgcct 472 || ||||| || |||||||| |||||||| |||||||| Sbjct: 970 gctcacctggcacaccgttcacaggtgcttcgctgcct 1007
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Minus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 307224 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 307165 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 307164 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 307105 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 307104 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 307045 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 307044 acgacgacgacga 307032 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 412 tgctcatccagatgaactacagggcgcacctcgcccaccgttcccaggtgctccgctgcc 471 |||| |||||| ||||||||||||| ||||| || |||||||| |||||||| ||||||| Sbjct: 306462 tgctgatccagttgaactacagggctcacctggcacaccgttcacaggtgcttcgctgcc 306403 Query: 472 t 472 | Sbjct: 306402 t 306402
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Minus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 17177 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 17118 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 17117 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 17058 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 17057 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 16998 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 16997 acgacgacgacga 16985 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 412 tgctcatccagatgaactacagggcgcacctcgcccaccgttcccaggtgctccgctgcc 471 |||| |||||| ||||||||||||| ||||| || |||||||| |||||||| ||||||| Sbjct: 16415 tgctgatccagttgaactacagggctcacctggcacaccgttcacaggtgcttcgctgcc 16356 Query: 472 t 472 | Sbjct: 16355 t 16355
>dbj|AK103829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A06, full insert sequence Length = 1819 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Plus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 485 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 544 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 545 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 604 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 605 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 664 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 665 acgacgacgacga 677 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 315 gaggacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaag 374 |||||||||||||| || |||| |||||| | ||||| ||||| |||| || |||||| Sbjct: 850 gaggacaacaccgctggatgcgtcgccattagaaaggcttttgcattgggcaatggcaag 909 Query: 375 gggaaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagg 434 | ||| ||||| ||||| || ||||| || || |||| |||||| ||||||||||| Sbjct: 910 gcaaagaagaaggaactgtccccacaggatgcggcattgctgatccagttgaactacagg 969 Query: 435 gcgcacctcgcccaccgttcccaggtgctccgctgcct 472 || ||||| || |||||||| |||||||| |||||||| Sbjct: 970 gctcacctggcacaccgttcacaggtgcttcgctgcct 1007
>dbj|AK060638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D03, full insert sequence Length = 1464 Score = 129 bits (65), Expect = 9e-27 Identities = 161/193 (83%) Strand = Plus / Plus Query: 1 aggcggagctcgcctcccccaacgacgacggattcgaccgcaagtggaagtgggaggcca 60 |||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 420 aggctgagctcgactccccctacgacgatggattcgaccgcaagtggaagtgggaggcca 479 Query: 61 agtccaagcccggcgccggaggcaagaccaagaccaagtggggcaccgagatcaagggca 120 || ||||| ||| | ||| | |||||| |||||||| |||| | ||||||||| Sbjct: 480 aggccaagaccgcctccgctgctgccaccaagctcaagtgggccacccacctcaagggca 539 Query: 121 agggctcgctcgagccgtggtcccacgcctacacctgggaggaggacttcagcgcctccg 180 |||| | |||||||| ||||| ||| ||||||||||||||||||||||| ||| ||| Sbjct: 540 agggttgcctcgagccatggtcacactcctacacctgggaggaggacttctctgccaccg 599 Query: 181 acgatgacgacga 193 |||| |||||||| Sbjct: 600 acgacgacgacga 612 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 315 gaggacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaag 374 |||||||||||||| || |||| |||||| | ||||| ||||| |||| || |||||| Sbjct: 785 gaggacaacaccgctggatgcgtcgccattagaaaggcttttgcattgggcaatggcaag 844 Query: 375 gggaaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagg 434 | ||| ||||| ||||| || ||||| || || |||| |||||| ||||||||||| Sbjct: 845 gcaaagaagaaggaactgtccccacaggatgcggcattgctgatccagttgaactacagg 904 Query: 435 gcgcacctcgcccaccgttcccaggtgctccgctgcct 472 || ||||| || |||||||| |||||||| |||||||| Sbjct: 905 gctcacctggcacaccgttcacaggtgcttcgctgcct 942
>gb|AY103721.1| Zea mays PCO130455 mRNA sequence Length = 1607 Score = 101 bits (51), Expect = 2e-18 Identities = 132/159 (83%) Strand = Plus / Plus Query: 314 cgaggacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaa 373 |||||||||||| ||||| |||| ||||||| | ||||| |||| ||| || |||| Sbjct: 771 cgaggacaacactgccggatgcgtcgccatcagaaaggcttttgaaatgaaccactgcaa 830 Query: 374 ggggaaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacag 433 ||| ||| ||||| || || || ||||| ||||| ||||||||||||||||||||||| Sbjct: 831 gggcaagaggaaggaactttccccacaggatgccgcactgctcatccagatgaactacag 890 Query: 434 ggcgcacctcgcccaccgttcccaggtgctccgctgcct 472 ||||||||| ||||| || |||||||||||||| ||||| Sbjct: 891 ggcgcacctggcccatcgctcccaggtgctccgttgcct 929 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 26 cgacggattcgaccgcaagtggaagtgggaggccaag 62 |||||| |||||||||||||||||||||||| ||||| Sbjct: 510 cgacggcttcgaccgcaagtggaagtgggagtccaag 546 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Plus Query: 95 caagtggggcaccgagatcaagggcaagggctcgctcgagccgtggtcccacgcctac 152 |||||||| || ||||||||||| ||||||| |||||||| |||||| || ||||| Sbjct: 573 caagtgggccaaggagatcaaggggaagggctgcctcgagccttggtccaactcctac 630
>gb|BT017019.1| Zea mays clone EK07D2312B08.c mRNA sequence Length = 886 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 333 tgcgacgccatccgcaaggcgtttgccatggggaacggcaaggggaaggccaaggagctg 392 |||| ||||||| | ||||| ||||| | ||| ||||||||||| ||| |||||||| Sbjct: 194 tgcgtcgccatcagaaaggcatttgctaagggcaacggcaagggaaagaggaaggagctc 253 Query: 393 tcgccgcaggacgccgcgctgctcatccagatgaactacagggcgcacctcgcccaccgt 452 || ||||||||||| || ||||||||||||||| ||||||||| ||||| || || || Sbjct: 254 tcaccgcaggacgctgcattgctcatccagatgacctacagggctcaccttgctcatcgc 313 Query: 453 tcccaggtgctccgctgcct 472 ||||||||||| |||||||| Sbjct: 314 tcccaggtgcttcgctgcct 333
>gb|AY105133.1| Zea mays PCO113207 mRNA sequence Length = 1152 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 95 caagtggggcaccgagatcaagggcaagggctcgctcgagccgtggtcccacgcctacac 154 ||||||||| ||| | ||||||||||||| | |||||||| |||||||| |||||||| Sbjct: 3 caagtggggtgccgcggtcaagggcaagggatgtctcgagccctggtcccaggcctacac 62 Query: 155 ctgggaggaggacttcagcgcc 176 |||||||||||||||| |||| Sbjct: 63 gtgggaggaggacttcaccgcc 84 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 396 ccgcaggacgccgcgctgctcatccagatgaactacagggcgcacctcgcccaccgttcc 455 ||||||||||| || ||||||||||||||| ||||||||| ||||| || || || ||| Sbjct: 319 ccgcaggacgctgcattgctcatccagatgacctacagggctcaccttgctcatcgctcc 378 Query: 456 caggtgctccgctgcct 472 |||||||| |||||||| Sbjct: 379 caggtgcttcgctgcct 395
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 300594 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 300640 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 388 agctgtcgccgcaggacgccgcgctgctcatccagatgaactacagggcgcacctcgccc 447 ||||||| |||||||| || || || | ||||||||||||||| |||| ||||| |||| Sbjct: 301484 agctgtccccgcaggatgctgcattgttgatccagatgaactaccgggctcacctagccc 301543 Query: 448 accgttcccaggtgctccgctgcct 472 |||| || || ||||| |||||||| Sbjct: 301544 accgctcgcaagtgctgcgctgcct 301568
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 29378 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 29424 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 388 agctgtcgccgcaggacgccgcgctgctcatccagatgaactacagggcgcacctcgccc 447 ||||||| |||||||| || || || | ||||||||||||||| |||| ||||| |||| Sbjct: 30268 agctgtccccgcaggatgctgcattgttgatccagatgaactaccgggctcacctagccc 30327 Query: 448 accgttcccaggtgctccgctgcct 472 |||| || || ||||| |||||||| Sbjct: 30328 accgctcgcaagtgctgcgctgcct 30352
>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C06 Length = 110989 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 110569 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 110615
>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, clone:OJA1212_C06 Length = 113554 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 113134 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 113180
>dbj|AK120505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123A20, full insert sequence Length = 1063 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 212 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 166
>dbj|AK102953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115E12, full insert sequence Length = 1565 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 522 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 568 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 318 gacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaagggg 377 |||||||| ||||| |||| ||||||| |||||||||||| | | ||| |||||| Sbjct: 803 gacaacactgccggatgcgtcgccatcaacaaggcgtttgcaagcagctacgccaagggc 862 Query: 378 aaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagggcg 437 ||| ||| ||||||| |||||||| || || || | ||||||||||||||| |||| Sbjct: 863 aagagaaagcagctgtccccgcaggatgctgcattgttgatccagatgaactaccgggct 922 Query: 438 cacctcgcccaccgttcccaggtgctccgctgcct 472 ||||| |||||||| || || ||||| |||||||| Sbjct: 923 cacctagcccaccgctcgcaagtgctgcgctgcct 957
>dbj|AK063929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C12, full insert sequence Length = 1548 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 16 cccccaacgacgacggattcgaccgcaagtggaagtgggaggccaag 62 ||||||||||||| || |||||||||||||||||||||||| ||||| Sbjct: 486 cccccaacgacgatggcttcgaccgcaagtggaagtgggagtccaag 532 Score = 61.9 bits (31), Expect = 2e-06 Identities = 124/155 (80%) Strand = Plus / Plus Query: 318 gacaacaccgccggctgcgacgccatccgcaaggcgtttgccatggggaacggcaagggg 377 |||||||| ||||| |||| ||||||| |||||||||||| | | ||| |||||| Sbjct: 767 gacaacactgccggatgcgtcgccatcaacaaggcgtttgcaagcagctacgccaagggc 826 Query: 378 aaggccaaggagctgtcgccgcaggacgccgcgctgctcatccagatgaactacagggcg 437 ||| ||| ||||||| |||||||| || || || | ||||||||||||||| |||| Sbjct: 827 aagagaaagcagctgtccccgcaggatgctgcattgttgatccagatgaactaccgggct 886 Query: 438 cacctcgcccaccgttcccaggtgctccgctgcct 472 ||||| |||||||| || || ||||| |||||||| Sbjct: 887 cacctagcccaccgctcgcaagtgctgcgctgcct 921
>gb|AY543007.1| Bigelowiella natans protein disulfide isomerase mRNA, complete cds Length = 1460 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 302 cgaggagatccccgaggacaacaccgc 328 |||||||||||| |||||||||||||| Sbjct: 988 cgaggagatccctgaggacaacaccgc 1014
>gb|AC125781.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0058G18, complete sequence Length = 175397 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacgatg 195 ||||||||||||||||||||||| Sbjct: 1517 cgcctccgacgatgacgacgatg 1539
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 173 cgcctccgacgatgacgacgatg 195 ||||||||||||||||||||||| Sbjct: 9085 cgcctccgacgatgacgacgatg 9063
>gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2278 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 224 ggagcagaagaaggagcccaagaagatcaag 254 |||| ||||||||||| |||||||||||||| Sbjct: 882 ggaggagaagaaggagaccaagaagatcaag 912
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacgatg 195 ||||||||||||||||||||||| Sbjct: 24813403 cgcctccgacgatgacgacgatg 24813425
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacgatg 195 ||||||||||||||||||||||| Sbjct: 25125073 cgcctccgacgatgacgacgatg 25125095
>ref|XM_848715.1| PREDICTED: Canis familiaris similar to IQ motif containing D (LOC611081), mRNA Length = 1574 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 364 ggaacggcaaggggaaggccaaggag 389 |||| ||||||||||||||||||||| Sbjct: 1376 ggaagggcaaggggaaggccaaggag 1401
>ref|XM_503149.1| Yarrowia lipolytica CLIB122, YALI0D22396g predicted mRNA Length = 2940 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 1181 ggagcagaagaaggagcccaag 1160 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 1118 ggagcagaagaaggagcccaag 1097 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 1085 ggagcagaagaaggagcccaag 1064
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 242 caagaagatcaaggccgccgccaagg 267 |||||||| ||||||||||||||||| Sbjct: 2280329 caagaagagcaaggccgccgccaagg 2280354
>gb|AY172973.1| Mastigamoeba balamuthi protein disulfide isomerase-like protein gene, complete cds Length = 875 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 380 ggccaaggagctgtcgccgcaggacgccgcgctg 413 ||||||||||||| || ||||||||| ||||||| Sbjct: 309 ggccaaggagctggcggcgcaggacgacgcgctg 342
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gccgcaggacgccgcgctgctc 416 |||||||||||||||||||||| Sbjct: 4257892 gccgcaggacgccgcgctgctc 4257871
>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 100390 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 85 agaccaagaccaagtggggcaccgag 110 ||||||||||||||| |||||||||| Sbjct: 43009 agaccaagaccaagttgggcaccgag 42984
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 2850206 ggagcagaagaaggagcccaag 2850227 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 2850173 ggagcagaagaaggagcccaag 2850194 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 ggagcagaagaaggagcccaag 245 |||||||||||||||||||||| Sbjct: 2850110 ggagcagaagaaggagcccaag 2850131
>gb|DQ028052.1| Scomberoides lysan NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial Length = 710 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 gagaagaagccggccaggaag 290 ||||||||||||||||||||| Sbjct: 683 gagaagaagccggccaggaag 663
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gagcccaagaagatcaaggcc 257 ||||||||||||||||||||| Sbjct: 2574203 gagcccaagaagatcaaggcc 2574183
>gb|BC066021.1| Mus musculus gene model 166, (NCBI), mRNA (cDNA clone IMAGE:5717506), partial cds Length = 2134 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 1068 aggcaagaccaagaccaagtg 1088
>ref|XM_753521.1| Ustilago maydis 521 hypothetical protein (UM02467.1) partial mRNA Length = 4563 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 cgacgatgacgacgatgccgactac 203 |||||| |||||||||||||||||| Sbjct: 2013 cgacgacgacgacgatgccgactac 2037
>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence Length = 204278 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 44052 aggcaagaccaagaccaagtg 44032
>ref|XM_386605.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06429.1) partial mRNA Length = 3105 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 aaggagcccaagaagatcaag 254 ||||||||||||||||||||| Sbjct: 2224 aaggagcccaagaagatcaag 2244
>gb|AC122417.4| Mus musculus BAC clone RP24-159C12 from chromosome 7, complete sequence Length = 188555 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 133973 aggcaagaccaagaccaagtg 133953
>ref|XM_547031.2| PREDICTED: Canis familiaris hypothetical LOC489912 (LOC489912), mRNA Length = 1108 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 1087 aggcaagaccaagaccaagtg 1107
>gb|AE005926.1| Caulobacter crescentus CB15 section 252 of 359 of the complete genome Length = 10961 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 gacgccgcgctgctcatccag 422 ||||||||||||||||||||| Sbjct: 1765 gacgccgcgctgctcatccag 1745
>dbj|AK140121.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230307J03 product:hypothetical protein, full insert sequence Length = 1832 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 1488 aggcaagaccaagaccaagtg 1508
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacga 193 ||||||||||||||||||||| Sbjct: 17087092 cgcctccgacgatgacgacga 17087112
>ref|NM_001033040.1| Mus musculus gene model 166, (NCBI) (Gm166), mRNA Length = 1832 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aggcaagaccaagaccaagtg 100 ||||||||||||||||||||| Sbjct: 1488 aggcaagaccaagaccaagtg 1508
>dbj|AP006057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1342C04 Length = 172097 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacga 193 ||||||||||||||||||||| Sbjct: 27849 cgcctccgacgatgacgacga 27869
>dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0025H07 Length = 145605 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 cgcctccgacgatgacgacga 193 ||||||||||||||||||||| Sbjct: 80751 cgcctccgacgatgacgacga 80771
>dbj|AP004422.1| Gambusia affinis mitochondrial DNA, complete genome Length = 16614 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 gagaagaagccggccaggaag 290 ||||||||||||||||||||| Sbjct: 13241 gagaagaagccggccaggaag 13221
>gb|DQ228937.1| Chanos chanos ribosomal protein L4 mRNA, partial cds Length = 519 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 catcgaggagatccccgagg 318 |||||||||||||||||||| Sbjct: 171 catcgaggagatccccgagg 190
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 aaggccgccgccaaggacgagaag 275 |||||||||||||||| ||||||| Sbjct: 3629557 aaggccgccgccaagggcgagaag 3629580
>ref|NM_192784.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aggaggacttcagcgcctcc 179 |||||||||||||||||||| Sbjct: 749 aggaggacttcagcgcctcc 768
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caccgagatcaagggcaagg 123 |||||||||||||||||||| Sbjct: 3050355 caccgagatcaagggcaagg 3050336
>ref|XM_415628.1| PREDICTED: Gallus gallus similar to KIAA1753 protein (LOC417371), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cagaagaaggagcccaagaa 247 |||||||||||||||||||| Sbjct: 900 cagaagaaggagcccaagaa 919
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 9492779 gcctccgacgatgacgacga 9492760
>ref|XM_754224.1| Ustilago maydis 521 hypothetical protein (UM03170.1) partial mRNA Length = 2799 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 agcgcctccgacgatgacga 190 |||||||||||||||||||| Sbjct: 784 agcgcctccgacgatgacga 803
>ref|XM_744142.1| Aspergillus fumigatus Af293 glycerophosphoryl diester phosphodiesterase family family (Afu2g00990) partial mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccgccggctgcgacgccatc 344 |||||||||||||||||||| Sbjct: 128 ccgccggctgcgacgccatc 147
>emb|CR339059.15| Zebrafish DNA sequence from clone CH211-121I18 in linkage group 3, complete sequence Length = 154299 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgcccaccgttcccaggtgc 462 |||||||||||||||||||| Sbjct: 119725 cgcccaccgttcccaggtgc 119744
>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8, complete sequence Length = 215608 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 cctcgcccaccgttcccaggtgct 463 |||||||||||||||||| ||||| Sbjct: 193236 cctcgcccaccgttcccacgtgct 193213
>emb|AL391825.15| Human DNA sequence from clone RP11-456P18 on chromosome 1 Contains the 3' end of the ATF6 gene for activating transcription factor 6, a proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)(PSME1) pseudogene, the 3' end of a novel gene (DKFZP586L151) and a CpG island, complete sequence Length = 211662 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 acctgggaggaggacttcag 172 |||||||||||||||||||| Sbjct: 58322 acctgggaggaggacttcag 58303
>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13, complete sequence Length = 258636 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgcccaccgttcccaggtgc 462 |||||||||||||||||||| Sbjct: 98126 cgcccaccgttcccaggtgc 98145
>emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in linkage group 4, complete sequence Length = 204160 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgcccaccgttcccaggtgc 462 |||||||||||||||||||| Sbjct: 178594 cgcccaccgttcccaggtgc 178613
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 aagaagatcaaggccgccgccaag 266 ||||||| |||||||||||||||| Sbjct: 1006933 aagaagagcaaggccgccgccaag 1006956
>dbj|AB205157.1| Petromyzon marinus CNP mRNA for C-type natriuretic peptide, partial cds Length = 474 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gacgatgacgacgatgccga 199 |||||||||||||||||||| Sbjct: 447 gacgatgacgacgatgccga 466
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 9490900 gcctccgacgatgacgacga 9490881
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 aggaggacttcagcgcctcc 179 |||||||||||||||||||| Sbjct: 24391996 aggaggacttcagcgcctcc 24391977
>gb|AY466441.1| Saccharopolyspora spinosa NRLL 18395 obscurin polyketide synthase gene locus, complete sequence Length = 108584 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gatgccgactacccggagga 211 |||||||||||||||||||| Sbjct: 19842 gatgccgactacccggagga 19823
>gb|AC016907.6| Homo sapiens BAC clone RP11-439P4 from 2, complete sequence Length = 202827 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ggtcccacgcctacacctgggagg 162 ||||||| |||||||||||||||| Sbjct: 169138 ggtcccaagcctacacctgggagg 169161
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 119907 gcctccgacgatgacgacga 119926
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 aggaggacttcagcgcctcc 179 |||||||||||||||||||| Sbjct: 137900 aggaggacttcagcgcctcc 137881
>dbj|AK103191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121O10, full insert sequence Length = 1065 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 317 gcctccgacgatgacgacga 336
>dbj|AK071043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079J04, full insert sequence Length = 999 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 251 gcctccgacgatgacgacga 270
>dbj|AK061080.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-F02, full insert sequence Length = 1119 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gcctccgacgatgacgacga 193 |||||||||||||||||||| Sbjct: 242 gcctccgacgatgacgacga 261
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 agatcaaggccgccgccaaggacg 270 ||||||||| |||||||||||||| Sbjct: 48421 agatcaagggcgccgccaaggacg 48398
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gagcagaagaaggagcccaagaag 248 |||| ||||||||||||||||||| Sbjct: 1809013 gagcggaagaaggagcccaagaag 1808990
>gb|M64624.1|RCAFICO2F Rhodobacter sphaeroides form I Co-2 fixation operon genes, complete cds Length = 5628 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 caccgagatcaagggcaagg 123 |||||||||||||||||||| Sbjct: 3490 caccgagatcaagggcaagg 3509 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,572,231 Number of Sequences: 3902068 Number of extensions: 3572231 Number of successful extensions: 81164 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80071 Number of HSP's gapped (non-prelim): 1089 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)