ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast79g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VIV_ORYSA (P37398) Protein viviparous homolog 31 2.0
2UFO3_MAIZE (P16167) Anthocyanidin 3-O-glucosyltransferase (EC 2.... 30 2.6
3ACHB2_HUMAN (P17787) Neuronal acetylcholine receptor protein, be... 30 2.6
4UFO2_MAIZE (P16165) Anthocyanidin 3-O-glucosyltransferase (EC 2.... 30 3.4
5JHD3A_PONPY (Q5RD88) JmjC domain-containing histone demethylatio... 29 7.6
6JHD3A_MOUSE (Q8BW72) JmjC domain-containing histone demethylatio... 29 7.6
7JHD3A_HUMAN (O75164) JmjC domain-containing histone demethylatio... 29 7.6

>VIV_ORYSA (P37398) Protein viviparous homolog|
          Length = 728

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 397 EESGDPCMDGKDLIAPSDLPPFYAQ 471
           +++GD CM+G D  AP DLP F+ +
Sbjct: 169 DDAGDACMEGSD--APDDLPAFFME 191



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>UFO3_MAIZE (P16167) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115)|
           (Flavonol 3-O-glucosyltransferase) (UDP-glucose
           flavonoid 3-O-glucosyltransferase) (Bronze-1) (Bz-W22
           allele)
          Length = 471

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 371 CPRPDDRARTRSISPGRGAPSDAPFFLLLRRDQAALAPP 255
           CPRPD+    R ++ G  A S APF   LR D   L PP
Sbjct: 300 CPRPDE---LRELAAGLEA-SGAPFLWSLREDSWTLLPP 334



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>ACHB2_HUMAN (P17787) Neuronal acetylcholine receptor protein, beta-2 subunit|
           precursor
          Length = 502

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 234 PRHPFFLRRCQRRLVTPEEEEEGSIAWRSSAGADRPCSCTIIRARAVGF-HAFG 392
           PRH    +R + R    E E  G++ +R + GAD  C+C + RA   G   AFG
Sbjct: 352 PRHHCARQRLRLRRRQREREGAGALFFREAPGAD-SCTCFVNRASVQGLAGAFG 404



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>UFO2_MAIZE (P16165) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115)|
           (Flavonol 3-O-glucosyltransferase) (UDP-glucose
           flavonoid 3-O-glucosyltransferase) (Bronze-1) (Bz-Mc2
           allele)
          Length = 471

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 371 CPRPDDRARTRSISPGRGAPSDAPFFLLLRRDQAALAPP 255
           CPRPD+    R ++ G  A S APF   LR D   L PP
Sbjct: 300 CPRPDE---LRELAAGLEA-SAAPFLWSLREDSWTLLPP 334



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>JHD3A_PONPY (Q5RD88) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = +3

Query: 222 SHLPPRHPFFLRRC-----QRRLVTPEEEEEGSIAW 314
           S LP  HP  L+ C         +TPEEE E + AW
Sbjct: 601 SKLPRHHPLVLQECVSDDETSEQLTPEEEAEETEAW 636



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>JHD3A_MOUSE (Q8BW72) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = +3

Query: 222 SHLPPRHPFFLRRC-----QRRLVTPEEEEEGSIAW 314
           S LP  HP  L+ C         +TPEEE E + AW
Sbjct: 601 SKLPRHHPLVLQECGSDDETSEQLTPEEEAEETEAW 636



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>JHD3A_HUMAN (O75164) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = +3

Query: 222 SHLPPRHPFFLRRC-----QRRLVTPEEEEEGSIAW 314
           S LP  HP  L+ C         +TPEEE E + AW
Sbjct: 601 SKLPRHHPLVLQECVSDDETSEQLTPEEEAEETEAW 636


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,012,731
Number of Sequences: 219361
Number of extensions: 884072
Number of successful extensions: 2169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2168
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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