ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79g02 |
|---|---|
| Clone Library Name | barley_pub |
>LIMK1_CHICK (Q8QFP8) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (chLIMK1)| Length = 662 Score = 30.8 bits (68), Expect = 0.82 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 39 AD*DYIVRRRGFDGDVQGFPPRVCSPAC 122 AD DY+ R F +V+GF R C PAC Sbjct: 555 ADPDYLPRTTDFGLNVRGFLERYCPPAC 582
>LIMK1_RAT (P53669) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)| Length = 647 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 39 AD*DYIVRRRGFDGDVQGFPPRVCSPAC 122 AD DY+ R F +V+GF R C P C Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575
>LIMK1_MOUSE (P53668) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (KIZ-1)| Length = 647 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 39 AD*DYIVRRRGFDGDVQGFPPRVCSPAC 122 AD DY+ R F +V+GF R C P C Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575
>LIMK1_HUMAN (P53667) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1)| Length = 647 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 39 AD*DYIVRRRGFDGDVQGFPPRVCSPAC 122 AD DY+ R F +V+GF R C P C Sbjct: 548 ADPDYLPRTMDFGLNVRGFLDRYCPPNC 575
>METK_PSEPK (Q88D60) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 396 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = +3 Query: 105 VCSPACRCFPRRLGRRNSGHGQEGGAHGRRAGLLPWRR 218 V PA CF RL R A R++GLLPW R Sbjct: 134 VLMPAPICFSHRLVERQ--------AEARKSGLLPWLR 163
>METK_PSEAE (Q9I5Z0) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 396 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = +3 Query: 105 VCSPACRCFPRRLGRRNSGHGQEGGAHGRRAGLLPWRR 218 V PA CF RL R A R++GLLPW R Sbjct: 134 VLMPAPICFSHRLVERQ--------AEARKSGLLPWLR 163
>ZO3_MOUSE (Q9QXY1) Tight junction protein ZO-3 (Zonula occludens 3 protein)| (Zona occludens 3 protein) (Tight junction protein 3) Length = 905 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +3 Query: 3 TKPAPTQSHSTVAD*DYIVRRRGFDGDVQGFPPRVCSPACRCFPRRLGRRNSGHGQEGGA 182 TK +P H ++D + RG++GD S + R + R R +G G+ Sbjct: 100 TKASPASGHQ-LSDQEEADHGRGYEGDSS-------SGSGRSWGERSRRSRAGRRGRVGS 151 Query: 183 HGRRA 197 HGRR+ Sbjct: 152 HGRRS 156
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +3 Query: 102 RVCSPACRCFPRRLGRRNSGHGQEGGAHGRRAGLLPWRRRLP 227 R+ P + P R GRR G+ G G GL RRR P Sbjct: 126 RLQPPPTKAQPARGGRRGRRRGRGRGGPGAADGLSDPRRRAP 167
>TAUB_SHIFL (Q83MA0) Taurine import ATP-binding protein tauB (EC 3.6.3.36)| Length = 255 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 144 GRRNSGHGQEGGAHGRRAGLLPWR 215 G+R G G E G + GLLPWR Sbjct: 62 GKRIEGPGAERGVVFQNEGLLPWR 85
>TAUB_ECOLI (Q47538) Taurine import ATP-binding protein tauB (EC 3.6.3.36)| Length = 255 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 144 GRRNSGHGQEGGAHGRRAGLLPWR 215 G+R G G E G + GLLPWR Sbjct: 62 GKRIEGPGAERGVVFQNEGLLPWR 85
>TAUB_ECO57 (Q8X5I6) Taurine import ATP-binding protein tauB (EC 3.6.3.36)| Length = 255 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 144 GRRNSGHGQEGGAHGRRAGLLPWR 215 G+R G G E G + GLLPWR Sbjct: 62 GKRIEGPGAERGVVFQNEGLLPWR 85
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +3 Query: 102 RVCSPACRCFPRRLGRRNSGHGQEGGAHGRRAGLLPWRRRLP 227 R+ P + P R GRR G+ G G GL RRR P Sbjct: 126 RLQPPPTKAQPARGGRRGRRRGRGRGGPGAADGLSDPRRRAP 167 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.127 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,083,793 Number of Sequences: 219361 Number of extensions: 436447 Number of successful extensions: 981 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 981 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
