Clone Information

BLAST Search Result

Clone Name	bast79g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY106990.1\| Zea mays PCO149295 mRNA sequence	127	3e-26
2	gb\|AY104712.1\| Zea mays PCO072958 mRNA sequence	82	2e-12
3	emb\|X52580.1\|HVGRP Barley grp gene for glycine rich protein	64	4e-07
4	ref\|XM_466439.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.021
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.021
6	dbj\|AP005644.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.021
7	dbj\|AP005643.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.021
8	dbj\|AK062460.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.021
9	ref\|NM_018753.3\| Mus musculus tyrosine 3-monooxygenase/tryptopha...	42	1.3
10	emb\|AJ011500.1\|SVI011500 Streptomyces violaceoruber Tu22 granati...	42	1.3
11	dbj\|AK144061.1\| Mus musculus adult male kidney cDNA, RIKEN full-...	42	1.3
12	dbj\|AK150414.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	42	1.3
13	dbj\|AK151294.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	42	1.3
14	dbj\|AK002632.1\| Mus musculus adult male kidney cDNA, RIKEN full-...	42	1.3
15	dbj\|AK083367.1\| Mus musculus 2 days neonate thymus thymic cells ...	42	1.3
16	gb\|AF281817.1\|AF281817 Tupaia herpesvirus strain 2, complete genome	42	1.3
17	dbj\|AK004872.1\| Mus musculus adult male liver cDNA, RIKEN full-l...	42	1.3
18	dbj\|AK011389.1\| Mus musculus 10 days embryo whole body cDNA, RIK...	42	1.3
19	emb\|AL591542.20\| Mouse DNA sequence from clone RP23-321M14 on ch...	42	1.3
20	gb\|AF058797.1\|AF058797 Mus musculus 14-3-3 protein beta mRNA, co...	42	1.3
21	ref\|XM_493941.1\| Oryza sativa (japonica cultivar-group), Ozsa800...	40	5.2
22	gb\|AY043299.1\| Aeromonas salmonicida plasmid pRAS3.2, complete s...	40	5.2
23	gb\|AY043298.1\| Aeromonas salmonicida subsp. salmonicida plasmid ...	40	5.2
24	gb\|AY428550.1\| Chlamydia suis strain R19 invasin-like protein ge...	40	5.2
25	gb\|CP000127.1\| Nitrosococcus oceani ATCC 19707, complete genome	40	5.2
26	ref\|XM_584546.2\| PREDICTED: Bos taurus similar to phosphatidylin...	40	5.2
27	ref\|XM_875859.1\| PREDICTED: Bos taurus similar to phosphatidylin...	40	5.2
28	gb\|AC005158.3\| Homo sapiens BAC clone GS1-250N6 from 7, complete...	40	5.2
29	gb\|AC103576.8\| Rattus norvegicus 12 BAC CH230-63N13 (Children's ...	40	5.2
30	emb\|Y13383.2\|BPHYPLCRD Bordetella pertussis DNA for putative pat...	40	5.2
31	emb\|BX640417.1\| Bordetella pertussis strain Tohama I, complete g...	40	5.2
32	emb\|AJ133186.1\|SOL133186 streptomyces olivaceoviridis ATCC11238 ...	40	5.2
33	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	5.2
34	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
35	gb\|AC146165.2\| Pan troglodytes BAC clone RP43-36N14 from chromos...	40	5.2
36	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.2
37	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.2
38	dbj\|AP005113.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
39	dbj\|AP002071.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
40	dbj\|AP005052.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
41	dbj\|AK105148.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.2
42	dbj\|AK062399.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	5.2
43	gb\|AC167016.5\| Mus musculus chromosome 3, clone RP23-76C12, comp...	40	5.2
44	gb\|M57717.1\|TFETFFC2 Plasmid pTF-FC2 from Thiobacillus ferrooxid...	40	5.2

>gb|AY106990.1| Zea mays PCO149295 mRNA sequence
          Length = 778

 Score =  127 bits (64), Expect = 3e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                       
Query: 289 gggggcgggtacccaggccgcggcggcggcgggtactgccggtggggctgctgcggccgc 348
           |||||||| ||||| ||| ||||| ||||||| |||||| ||||||| ||||||  ||||
Sbjct: 247 gggggcggctaccctggcggcggccgcggcggttactgcaggtgggggtgctgcaaccgc 306

                                                       
Query: 349 gggtactacggcggctgccggtgctgctcgcgcgccgacgaggt 392
           |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 307 gggtactatggcggctgccggtgctgctcgcgcgccgacgaggt 350



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 33/36 (91%), Gaps = 3/36 (8%)
 Strand = Plus / Plus

                                               
Query: 187 gccgacgtgcaggactactaccgtggcggcggcggc 222
           ||||||||||||||||||   |||||||||||||||
Sbjct: 169 gccgacgtgcaggactac---cgtggcggcggcggc 201

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>gb|AY104712.1| Zea mays PCO072958 mRNA sequence
          Length = 772

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 323 actgccggtggggctgctgcggccgcgggtactacggcggctgccggtgctgctcgc 379
           ||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||
Sbjct: 352 actgccggtggggctgctgcaaccgcgggtaccatggcggctgccggtgctgctcgc 408



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ggcggcggcggctacccggg 230
           ||||||||||||||||||||
Sbjct: 300 ggcggcggcggctacccggg 319

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>emb|X52580.1|HVGRP Barley grp gene for glycine rich protein
          Length = 1877

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 107 ttgctctcctgcttgccgctgctttcctcgtcgcctcggc 146
           |||||||||||||||| |||||| ||||||||||||||||
Sbjct: 856 ttgctctcctgcttgctgctgctatcctcgtcgcctcggc 895



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 211  ggcggcggcggctacccgggcc 232
            ||||||||||||||||||||||
Sbjct: 1413 ggcggcggcggctacccgggcc 1434



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 361  ggctgccggtgctgctcgcgcgccgacgaggt 392
            |||||||| |||||  ||||||||||||||||
Sbjct: 1506 ggctgccgctgctgtgcgcgcgccgacgaggt 1537

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>ref|XM_466439.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 775

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 227
           ||||||||||||  ||| ||  ||||||||||||||||  || ||||||||||| |||||
Sbjct: 207 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 266

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 168      caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 227
                ||||||||||||  ||| ||  ||||||||||||||||  || ||||||||||| |||||
Sbjct: 22646005 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 22646064



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 307      cgcggcggcggcgggtactg 326
                ||||||||||||||||||||
Sbjct: 30022663 cgcggcggcggcgggtactg 30022682

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>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056I22
          Length = 147728

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 168   caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 227
             ||||||||||||  ||| ||  ||||||||||||||||  || ||||||||||| |||||
Sbjct: 93816 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 93875

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>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0046O12
          Length = 128223

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                        
Query: 168  caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 227
            ||||||||||||  ||| ||  ||||||||||||||||  || ||||||||||| |||||
Sbjct: 4801 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 4860

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>dbj|AK062460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D05, full
           insert sequence
          Length = 775

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 caagaaggaggagcccacggccgacgtgcaggactactaccgtggcggcggcggctaccc 227
           ||||||||||||  ||| ||  ||||||||||||||||  || ||||||||||| |||||
Sbjct: 207 caagaaggaggacaccaaggtggacgtgcaggactactggcgcggcggcggcgggtaccc 266

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>ref|NM_018753.3| Mus musculus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
           activation protein, beta polypeptide (Ywhab), mRNA
          Length = 2774

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 38  gtggcggcggcggctacccgg 18

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>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster
          Length = 39250

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   cggctgccggtgctgctcgcg 380
             |||||||||||||||||||||
Sbjct: 26674 cggctgccggtgctgctcgcg 26654

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>dbj|AK144061.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:F530213F11 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 2496

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 100 gtggcggcggcggctacccgg 80

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>dbj|AK150414.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830007B15 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 1582

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 50  gtggcggcggcggctacccgg 30

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>dbj|AK151294.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830027M05 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 1582

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 50  gtggcggcggcggctacccgg 30

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>dbj|AK002632.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:0610014N08 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 2403

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 56  gtggcggcggcggctacccgg 36

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>dbj|AK083367.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:C920024A14
           product:14-3-3 PROTEIN BETA/ALPHA (PROTEIN KINASE C
           INHIBITOR PROTEIN-1) (KCIP-1) homolog [Mus musculus],
           full insert sequence
          Length = 2373

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 27  gtggcggcggcggctacccgg 7

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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   ccaggccgcggcggcggcggg 321
             |||||||||||||||||||||
Sbjct: 41335 ccaggccgcggcggcggcggg 41315

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>dbj|AK004872.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched
           library, clone:1300003C17 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 2774

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 38  gtggcggcggcggctacccgg 18

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>dbj|AK011389.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610014A20 product:tyrosine
           3-monooxygenase/tryptophan 5-monooxygenase activation
           protein, beta polypeptide, full insert sequence
          Length = 1575

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 38  gtggcggcggcggctacccgg 18

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>emb|AL591542.20| Mouse DNA sequence from clone RP23-321M14 on chromosome 2, complete
              sequence
          Length = 197190

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    gtggcggcggcggctacccgg 229
              |||||||||||||||||||||
Sbjct: 120948 gtggcggcggcggctacccgg 120928

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>gb|AF058797.1|AF058797 Mus musculus 14-3-3 protein beta mRNA, complete cds
          Length = 1022

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 gtggcggcggcggctacccgg 229
           |||||||||||||||||||||
Sbjct: 36  gtggcggcggcggctacccgg 16

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>ref|XM_493941.1| Oryza sativa (japonica cultivar-group), Ozsa8006 predicted mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 gcggcggcggcgggtactgc 327
           ||||||||||||||||||||
Sbjct: 253 gcggcggcggcgggtactgc 234

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>gb|AY043299.1| Aeromonas salmonicida plasmid pRAS3.2, complete sequence
          Length = 11823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gctgccggtgctgctcgcgc 381
             ||||||||||||||||||||
Sbjct: 10221 gctgccggtgctgctcgcgc 10240

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>gb|AY043298.1| Aeromonas salmonicida subsp. salmonicida plasmid pRAS3.1, complete
             sequence
          Length = 11851

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gctgccggtgctgctcgcgc 381
             ||||||||||||||||||||
Sbjct: 10243 gctgccggtgctgctcgcgc 10262

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>gb|AY428550.1| Chlamydia suis strain R19 invasin-like protein gene, partial cds;
             insertion sequence IScs605, complete sequence; TetR(C)
             (tetR(C)), Tet(C) (tet(C)), MobE (mobE), MobD (mobD), MobC
             (mobC), MobB (mobB), MobA (mobA), RepA (repA), and RepC
             (repC) genes, complete cds; and invasin-like protein gene,
             partial cds
          Length = 13245

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gctgccggtgctgctcgcgc 381
             ||||||||||||||||||||
Sbjct: 10279 gctgccggtgctgctcgcgc 10260

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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     gctgccggtgctgctcgcgc 381
               ||||||||||||||||||||
Sbjct: 3339096 gctgccggtgctgctcgcgc 3339077

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>ref|XM_584546.2| PREDICTED: Bos taurus similar to phosphatidylinositol 4-kinase type
           II, transcript variant 1 (LOC507860), mRNA
          Length = 2135

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 cccaggccgcggcggcggcg 319
           ||||||||||||||||||||
Sbjct: 279 cccaggccgcggcggcggcg 298

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>ref|XM_875859.1| PREDICTED: Bos taurus similar to phosphatidylinositol 4-kinase type
           II, transcript variant 2 (LOC507860), mRNA
          Length = 2153

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 cccaggccgcggcggcggcg 319
           ||||||||||||||||||||
Sbjct: 279 cccaggccgcggcggcggcg 298

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>gb|AC005158.3| Homo sapiens BAC clone GS1-250N6 from 7, complete sequence
          Length = 266344

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cccaggccgcggcggcggcg 319
              ||||||||||||||||||||
Sbjct: 110545 cccaggccgcggcggcggcg 110564

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>gb|AC103576.8| Rattus norvegicus 12 BAC CH230-63N13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 219287

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    ggagcccacggccgacgtgc 196
              ||||||||||||||||||||
Sbjct: 203577 ggagcccacggccgacgtgc 203596

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>emb|Y13383.2|BPHYPLCRD Bordetella pertussis DNA for putative pathogenicity island coding for
             type III secretion system and flanking house keeping genes
          Length = 35026

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ccctggccgcggagggggcg 295
             ||||||||||||||||||||
Sbjct: 30611 ccctggccgcggagggggcg 30630

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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    ccctggccgcggagggggcg 295
              ||||||||||||||||||||
Sbjct: 278936 ccctggccgcggagggggcg 278917

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>emb|AJ133186.1|SOL133186 streptomyces olivaceoviridis ATCC11238 chi30 gene
          Length = 1199

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 caggccgcggcggcggcggg 321
           ||||||||||||||||||||
Sbjct: 296 caggccgcggcggcggcggg 277

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     gcggctgccggtgctgctcg 378
               ||||||||||||||||||||
Sbjct: 3300328 gcggctgccggtgctgctcg 3300309

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gcggcggcggcgggtactgc 327
               ||||||||||||||||||||
Sbjct: 3540578 gcggcggcggcgggtactgc 3540559

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>gb|AC146165.2| Pan troglodytes BAC clone RP43-36N14 from chromosome 7, complete
             sequence
          Length = 159324

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   cccaggccgcggcggcggcg 319
             ||||||||||||||||||||
Sbjct: 53883 cccaggccgcggcggcggcg 53902

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 328     cggtggggctgctgcggccg 347
               ||||||||||||||||||||
Sbjct: 4469836 cggtggggctgctgcggccg 4469817

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     tcccgggcgcggccgcggag 259
               ||||||||||||||||||||
Sbjct: 2813829 tcccgggcgcggccgcggag 2813810

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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  cgcggcggcggcgggtactg 326
            ||||||||||||||||||||
Sbjct: 2260 cgcggcggcggcgggtactg 2279

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>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0675A05
          Length = 131972

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gcggcggcggcgggtactgc 327
             ||||||||||||||||||||
Sbjct: 32415 gcggcggcggcgggtactgc 32396

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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    cgcggcggcggcgggtactg 326
              ||||||||||||||||||||
Sbjct: 122939 cgcggcggcggcgggtactg 122958

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>dbj|AK105148.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-C06, full
           insert sequence
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 43/50 (86%), Gaps = 3/50 (6%)
 Strand = Plus / Plus

                                                             
Query: 109 gctctcctgcttgccgctgctttcctcgtcgcctcggccgaagaaactca 158
           ||||||||||| || |||||||   |||||||||| |||||| |||||||
Sbjct: 448 gctctcctgctcgctgctgctt---tcgtcgcctctgccgaacaaactca 494

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>dbj|AK062399.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D11, full
           insert sequence
          Length = 488

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 cgcggcggcggcgggtactg 326
           ||||||||||||||||||||
Sbjct: 83  cgcggcggcggcgggtactg 102

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>gb|AC167016.5| Mus musculus chromosome 3, clone RP23-76C12, complete sequence
          Length = 225524

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    aactcaggccatggccaaga 172
              ||||||||||||||||||||
Sbjct: 148177 aactcaggccatggccaaga 148196

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>gb|M57717.1|TFETFFC2 Plasmid pTF-FC2 from Thiobacillus ferrooxidans mobA, mobB, mobC,
           mobD, mobE genes, complete cds, ORF's 3, 5 and 8,
           complete cds, and merR gene, 3' end
          Length = 5317

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 gctgccggtgctgctcgcgc 381
           ||||||||||||||||||||
Sbjct: 249 gctgccggtgctgctcgcgc 268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,949,055
Number of Sequences: 3902068
Number of extensions: 3949055
Number of successful extensions: 134399
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132557
Number of HSP's gapped (non-prelim): 1841
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result