ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast79f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
2dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4ref|XM_450738.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
6dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
7dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, comp... 44 0.39
8gb|AY109934.1| Zea mays CL64932_1 mRNA sequence 44 0.39
9gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete... 44 0.39
10ref|NM_189891.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.5
12gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 42 1.5
13emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.5
14emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 42 1.5
15emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 42 1.5
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
18dbj|AK106396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19dbj|AK105441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
20dbj|AK073805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
21dbj|D16640.1|RICOSVP1 Oryza sativa (japonica cultivar-group) DNA... 42 1.5
22ref|XM_474352.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
23gb|AC132404.5| Mus musculus BAC clone RP23-328O21 from chromosom... 40 6.0
24gb|AF516873.1| Synthetic construct membrane-acting immunotoxin f... 40 6.0
25emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chrom... 40 6.0
26emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in... 40 6.0
27emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chr... 40 6.0
28gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome... 40 6.0
29emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chrom... 40 6.0
30gb|AC118541.12| Mus musculus strain 129/SvJ chromosome 17 clone ... 40 6.0
31emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
32emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 ... 40 6.0
33emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in ... 40 6.0
34emb|CR354536.8| Zebrafish DNA sequence from clone DKEY-101K8 in ... 40 6.0
35emb|BX842687.13| Zebrafish DNA sequence from clone DKEY-97L11 in... 40 6.0
36gb|AE005824.1| Caulobacter crescentus CB15 section 150 of 359 of... 40 6.0
37gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence 40 6.0
38gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 6.0
39gb|AF239392.1|AF239392 Stellilabium pogonostalix 18S ribosomal R... 40 6.0
40dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41gb|AF350511.1|AF350511 Stellilabium pogonostalix 18S ribosomal R... 40 6.0
42gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complet... 40 6.0
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
44dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.0
45gb|AY110818.1| Zea mays CL1869_-1 mRNA sequence 40 6.0
46emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.0
47gb|DQ315849.1| Telipogon sp. Hirtz 7103 18S ribosomal RNA gene, ... 40 6.0
48gb|DQ315846.1| Telipogon sp. Whitten 2351 18S ribosomal RNA gene... 40 6.0
49gb|DQ315845.1| Telipogon sp. Whitten 2350 18S ribosomal RNA gene... 40 6.0
50gb|DQ315841.1| Telipogon hystrix voucher Whitten 1824 (FLAS) 18S... 40 6.0
51gb|DQ315839.1| Telipogon boliviensis voucher Dalstrom 2397 (SEL)... 40 6.0
52gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.0
53emb|AL824710.10| Mouse DNA sequence from clone RP23-35E16 on chr... 40 6.0
54emb|BX908745.12| Zebrafish DNA sequence from clone DKEY-208F1 in... 40 6.0
55gb|M60214.1|MZEREGPRO Zea mays viviparous-1 mRNA, complete cds 40 6.0
56emb|AJ001635.1|ZMVP1MCW Zea mays mRNA for viviparous-1 40 6.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 65/69 (94%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                           
Query: 373     cgtgcgactactcggacggcgagtgggtgccggacgcgcgcccgccgctctac-acggga 431
               ||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 7055785 cgtgcgactactccgacggcgagtgggtgccggacgcgcggccgcctctctacaacggga 7055726

                        
Query: 432     cgagctgcg 440
               |||||||||
Sbjct: 7055725 cgagctgcg 7055717



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 108/129 (83%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                           
Query: 53      caccaatttctcgcagaaccaccacctccagaacacccacttctc---gctccccaggaa 109
               ||||||||||  ||||||||||||||| ||||||| ||| ||||    |||||||| || 
Sbjct: 7056351 caccaatttcgtgcagaaccaccaccttcagaacagccagttcttcctgctccccaagag 7056292

                                                                           
Query: 110     gcaattcctggcctacgccctctacgccctcgtccccctcgcgctcctccattacctgct 169
               |||  |  || |||||||||||||||| ||| |||| ||||| |||||||||||||| ||
Sbjct: 7056291 gcagcttgtgacctacgccctctacgctctcatccctctcgccctcctccattaccttct 7056232

                        
Query: 170     cttcaaccc 178
               |||||||||
Sbjct: 7056231 cttcaaccc 7056223
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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 65/69 (94%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                         
Query: 373   cgtgcgactactcggacggcgagtgggtgccggacgcgcgcccgccgctctac-acggga 431
             ||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 76572 cgtgcgactactccgacggcgagtgggtgccggacgcgcggccgcctctctacaacggga 76513

                      
Query: 432   cgagctgcg 440
             |||||||||
Sbjct: 76512 cgagctgcg 76504



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 108/129 (83%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                         
Query: 53    caccaatttctcgcagaaccaccacctccagaacacccacttctc---gctccccaggaa 109
             ||||||||||  ||||||||||||||| ||||||| ||| ||||    |||||||| || 
Sbjct: 77138 caccaatttcgtgcagaaccaccaccttcagaacagccagttcttcctgctccccaagag 77079

                                                                         
Query: 110   gcaattcctggcctacgccctctacgccctcgtccccctcgcgctcctccattacctgct 169
             |||  |  || |||||||||||||||| ||| |||| ||||| |||||||||||||| ||
Sbjct: 77078 gcagcttgtgacctacgccctctacgctctcatccctctcgccctcctccattaccttct 77019

                      
Query: 170   cttcaaccc 178
             |||||||||
Sbjct: 77018 cttcaaccc 77010
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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0061B07
          Length = 124766

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 65/69 (94%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                          
Query: 373    cgtgcgactactcggacggcgagtgggtgccggacgcgcgcccgccgctctac-acggga 431
              ||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 115212 cgtgcgactactccgacggcgagtgggtgccggacgcgcggccgcctctctacaacggga 115153

                       
Query: 432    cgagctgcg 440
              |||||||||
Sbjct: 115152 cgagctgcg 115144



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 108/129 (83%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                          
Query: 53     caccaatttctcgcagaaccaccacctccagaacacccacttctc---gctccccaggaa 109
              ||||||||||  ||||||||||||||| ||||||| ||| ||||    |||||||| || 
Sbjct: 115778 caccaatttcgtgcagaaccaccaccttcagaacagccagttcttcctgctccccaagag 115719

                                                                          
Query: 110    gcaattcctggcctacgccctctacgccctcgtccccctcgcgctcctccattacctgct 169
              |||  |  || |||||||||||||||| ||| |||| ||||| |||||||||||||| ||
Sbjct: 115718 gcagcttgtgacctacgccctctacgctctcatccctctcgccctcctccattaccttct 115659

                       
Query: 170    cttcaaccc 178
              |||||||||
Sbjct: 115658 cttcaaccc 115650
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>ref|XM_450738.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 367 cgccgccgtgcgactactcggacggcgagtgggtgc 402
           |||||| ||||||||||||||| || ||||||||||
Sbjct: 428 cgccgcggtgcgactactcggagggggagtgggtgc 463



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 120 gcctacgccctctacgccctcgtccccctcgc 151
           ||||| ||||||||||||||| ||||||||||
Sbjct: 292 gcctatgccctctacgccctcctccccctcgc 323
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 367      cgccgccgtgcgactactcggacggcgagtgggtgc 402
                |||||| ||||||||||||||| || ||||||||||
Sbjct: 12501929 cgccgcggtgcgactactcggagggggagtgggtgc 12501964



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 120      gcctacgccctctacgccctcgtccccctcgc 151
                ||||| ||||||||||||||| ||||||||||
Sbjct: 12501793 gcctatgccctctacgccctcctccccctcgc 12501824
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>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711A01
          Length = 162400

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 367   cgccgccgtgcgactactcggacggcgagtgggtgc 402
             |||||| ||||||||||||||| || ||||||||||
Sbjct: 17256 cgccgcggtgcgactactcggagggggagtgggtgc 17291



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 120   gcctacgccctctacgccctcgtccccctcgc 151
             ||||| ||||||||||||||| ||||||||||
Sbjct: 17120 gcctatgccctctacgccctcctccccctcgc 17151
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>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence
          Length = 256992

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 119    ggcctacgccctctacgccctc 140
              ||||||||||||||||||||||
Sbjct: 142737 ggcctacgccctctacgccctc 142758
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>gb|AY109934.1| Zea mays CL64932_1 mRNA sequence
          Length = 984

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 389 cggcgagtgggtgccggacgcg 410
           ||||||||||||||||||||||
Sbjct: 234 cggcgagtgggtgccggacgcg 255
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>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence
          Length = 232605

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   ggcctacgccctctacgccctc 140
             ||||||||||||||||||||||
Sbjct: 99062 ggcctacgccctctacgccctc 99083
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>ref|NM_189891.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2187

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gcagaaccaccacctccagaa 85
           |||||||||||||||||||||
Sbjct: 720 gcagaaccaccacctccagaa 740
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 250    cccagcgcggccgcgcgcccg 270
              |||||||||||||||||||||
Sbjct: 694872 cccagcgcggccgcgcgcccg 694892
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 202     tcctggcccagccgcaggtgc 222
               |||||||||||||||||||||
Sbjct: 2241182 tcctggcccagccgcaggtgc 2241162
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    cccagcgcggccgcgcgcccg 270
              |||||||||||||||||||||
Sbjct: 105528 cccagcgcggccgcgcgcccg 105508
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   cccagcgcggccgcgcgcccg 270
             |||||||||||||||||||||
Sbjct: 58296 cccagcgcggccgcgcgcccg 58276
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    cccagcgcggccgcgcgcccg 270
              |||||||||||||||||||||
Sbjct: 323145 cccagcgcggccgcgcgcccg 323125
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 65       gcagaaccaccacctccagaa 85
                |||||||||||||||||||||
Sbjct: 39719414 gcagaaccaccacctccagaa 39719394
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>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0470A12
          Length = 185095

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    gcagaaccaccacctccagaa 85
             |||||||||||||||||||||
Sbjct: 70313 gcagaaccaccacctccagaa 70293
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>dbj|AK106396.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F08, full
           insert sequence
          Length = 1212

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 66  cagaaccaccacctccagaac 86
           |||||||||||||||||||||
Sbjct: 884 cagaaccaccacctccagaac 864
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>dbj|AK105441.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A06, full
           insert sequence
          Length = 2474

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gcagaaccaccacctccagaa 85
           |||||||||||||||||||||
Sbjct: 717 gcagaaccaccacctccagaa 737
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>dbj|AK073805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I02, full
           insert sequence
          Length = 2504

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gcagaaccaccacctccagaa 85
           |||||||||||||||||||||
Sbjct: 762 gcagaaccaccacctccagaa 782
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>dbj|D16640.1|RICOSVP1 Oryza sativa (japonica cultivar-group) DNA for VP1 protein,
           complete cds
          Length = 3743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  gcagaaccaccacctccagaa 85
           |||||||||||||||||||||
Sbjct: 884 gcagaaccaccacctccagaa 904
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>ref|XM_474352.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 cggcgcccgcgtcgccgccg 374
           ||||||||||||||||||||
Sbjct: 319 cggcgcccgcgtcgccgccg 300
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>gb|AC132404.5| Mus musculus BAC clone RP23-328O21 from chromosome 17, complete sequence
          Length = 207685

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ggagcagctgcccccgcccc 303
              ||||||||||||||||||||
Sbjct: 132898 ggagcagctgcccccgcccc 132879
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>gb|AF516873.1| Synthetic construct membrane-acting immunotoxin fusion protein
           mRNA, complete cds
          Length = 1509

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  agaaccaccacctccagaac 86
           ||||||||||||||||||||
Sbjct: 834 agaaccaccacctccagaac 815
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>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete
            sequence
          Length = 47325

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  ctgttggggaaaactcaagg 343
            ||||||||||||||||||||
Sbjct: 6730 ctgttggggaaaactcaagg 6749
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>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10,
             complete sequence
          Length = 127879

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cagaaccaccacctccagaa 85
             ||||||||||||||||||||
Sbjct: 30115 cagaaccaccacctccagaa 30096
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>emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chromosome 7, complete
              sequence
          Length = 186072

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    tgaggagcagctgcccccgccccc 304
              |||||||||||||||||| |||||
Sbjct: 114325 tgaggagcagctgccccccccccc 114348
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>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence
          Length = 220013

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 293   gcccccgccccctcccgaccgagg 316
             ||||||||| ||||||||||||||
Sbjct: 87115 gcccccgcctcctcccgaccgagg 87138
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>emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chromosome 17, complete
            sequence
          Length = 206278

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 281  tgaggagcagctgcccccgccccc 304
            ||||||||||||||||||| ||||
Sbjct: 7736 tgaggagcagctgcccccgacccc 7759
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>gb|AC118541.12| Mus musculus strain 129/SvJ chromosome 17 clone mgs1-205i23, complete
              sequence
          Length = 179569

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    ggagcagctgcccccgcccc 303
              ||||||||||||||||||||
Sbjct: 142689 ggagcagctgcccccgcccc 142708
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>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    cggcgcccgcgtcgccgccg 374
              ||||||||||||||||||||
Sbjct: 102256 cggcgcccgcgtcgccgccg 102237
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>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11,
             complete sequence
          Length = 231587

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cagaaccaccacctccagaa 85
             ||||||||||||||||||||
Sbjct: 54637 cagaaccaccacctccagaa 54618
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>emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in linkage group 23,
              complete sequence
          Length = 237446

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     cagaaccaccacctccagaa 85
              ||||||||||||||||||||
Sbjct: 217657 cagaaccaccacctccagaa 217676
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>emb|CR354536.8| Zebrafish DNA sequence from clone DKEY-101K8 in linkage group 17,
             complete sequence
          Length = 157228

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cagaaccaccacctccagaa 85
             ||||||||||||||||||||
Sbjct: 16716 cagaaccaccacctccagaa 16697
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>emb|BX842687.13| Zebrafish DNA sequence from clone DKEY-97L11 in linkage group 7, complete
              sequence
          Length = 218252

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     cagaaccaccacctccagaa 85
              ||||||||||||||||||||
Sbjct: 124884 cagaaccaccacctccagaa 124865
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>gb|AE005824.1| Caulobacter crescentus CB15 section 150 of 359 of the complete genome
          Length = 10405

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tcctggcccagccgcaggtg 221
            ||||||||||||||||||||
Sbjct: 9134 tcctggcccagccgcaggtg 9153
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>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence
          Length = 172798

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tcctccattacctgctcttc 173
             ||||||||||||||||||||
Sbjct: 50303 tcctccattacctgctcttc 50322
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      gcagaaccaccacctccaga 84
               ||||||||||||||||||||
Sbjct: 1784156 gcagaaccaccacctccaga 1784175
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>gb|AF239392.1|AF239392 Stellilabium pogonostalix 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 856

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 624 acctgctcttcaacccgctg 605
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 355      cggcgcccgcgtcgccgccg 374
                ||||||||||||||||||||
Sbjct: 34648135 cggcgcccgcgtcgccgccg 34648116
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>gb|AF350511.1|AF350511 Stellilabium pogonostalix 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 588 acctgctcttcaacccgctg 569
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>gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complete sequence
          Length = 179460

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   gctgcccccgccccctcccg 309
             ||||||||||||||||||||
Sbjct: 45459 gctgcccccgccccctcccg 45478
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     tgtcggcgcccgcgtcgccg 371
               ||||||||||||||||||||
Sbjct: 5375609 tgtcggcgcccgcgtcgccg 5375628
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    gagtgggtgccggacgcgcg 412
              ||||||||||||||||||||
Sbjct: 180585 gagtgggtgccggacgcgcg 180566
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>gb|AY110818.1| Zea mays CL1869_-1 mRNA sequence
          Length = 2456

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gcagaaccaccacctccaga 84
           ||||||||||||||||||||
Sbjct: 741 gcagaaccaccacctccaga 760
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>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete
             sequence
          Length = 100836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   cggcgcccgcgtcgccgccg 374
             ||||||||||||||||||||
Sbjct: 54236 cggcgcccgcgtcgccgccg 54217
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>gb|DQ315849.1| Telipogon sp. Hirtz 7103 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 768

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 588 acctgctcttcaacccgctg 569
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>gb|DQ315846.1| Telipogon sp. Whitten 2351 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 586 acctgctcttcaacccgctg 567
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>gb|DQ315845.1| Telipogon sp. Whitten 2350 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 586 acctgctcttcaacccgctg 567
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>gb|DQ315841.1| Telipogon hystrix voucher Whitten 1824 (FLAS) 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 26S ribosomal RNA gene,
           partial sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 586 acctgctcttcaacccgctg 567
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>gb|DQ315839.1| Telipogon boliviensis voucher Dalstrom 2397 (SEL) 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 26S ribosomal RNA gene,
           partial sequence
          Length = 728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acctgctcttcaacccgctg 182
           ||||||||||||||||||||
Sbjct: 548 acctgctcttcaacccgctg 529
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     cggtcctggcccagccgcag 218
               ||||||||||||||||||||
Sbjct: 1336769 cggtcctggcccagccgcag 1336750
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>emb|AL824710.10| Mouse DNA sequence from clone RP23-35E16 on chromosome 2, complete
             sequence
          Length = 83371

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 285   gagcagctgcccccgccccctccc 308
             |||||||||||||| |||||||||
Sbjct: 23798 gagcagctgccccctccccctccc 23821
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>emb|BX908745.12| Zebrafish DNA sequence from clone DKEY-208F1 in linkage group 18,
            complete sequence
          Length = 81197

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   cagaaccaccacctccagaa 85
            ||||||||||||||||||||
Sbjct: 4317 cagaaccaccacctccagaa 4298
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>gb|M60214.1|MZEREGPRO Zea mays viviparous-1 mRNA, complete cds
          Length = 2456

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gcagaaccaccacctccaga 84
           ||||||||||||||||||||
Sbjct: 741 gcagaaccaccacctccaga 760
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>emb|AJ001635.1|ZMVP1MCW Zea mays mRNA for viviparous-1
          Length = 1538

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gcagaaccaccacctccaga 84
           ||||||||||||||||||||
Sbjct: 365 gcagaaccaccacctccaga 384


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,987,679
Number of Sequences: 3902068
Number of extensions: 2987679
Number of successful extensions: 67106
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65789
Number of HSP's gapped (non-prelim): 1314
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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