>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score =  202 bits (515), Expect = 2e-52
 Identities = 96/151 (63%), Positives = 114/151 (75%)
 Frame = +3

Query: 3   APRARVATYKVCWVGGCFSSDILKGMEVAVAXXXXXXXXXXXXXXXXYYRDSIAVGAYSA 182
           APRARVA YKVCW+GGCFSSDIL  ++ A+A                YYRD +A+GA++A
Sbjct: 242 APRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAA 301

Query: 183 MEKGIFVSCSAGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKYDGVSLYSG 362
           ME+GI VSCSAGNAGP ++SL+N APWITTVGAGTLDRDFPA   LGNG  + GVSL+ G
Sbjct: 302 MERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKG 361

Query: 363 KQLPTTPVPFIYAGNASNSSMGALCMTGTLI 455
           + LP   +PFIYAGNASN++ G LCMTGTLI
Sbjct: 362 EALPDKLLPFIYAGNASNATNGNLCMTGTLI 392

>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)|
           (Cucumisin-like protein)
          Length = 749

 Score =  102 bits (254), Expect = 5e-22
 Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
 Frame = +3

Query: 6   PRARVATYKVCWV-GGCFSSDILKGMEVAVAXXXXXXXXXXXXXXXXYYRDSIAVGAYSA 182
           P AR+A YKVCW   GC   DIL G E A+                 Y  DSI+VG++ A
Sbjct: 241 PSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHA 300

Query: 183 MEKGIFVSCSAGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKYD--GVSLY 356
           M KGI    SAGN GP + ++TN  PWI TV A  +DR F + + LGNG  +   G+S++
Sbjct: 301 MRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMF 360

Query: 357 SGKQLPTTPVPFIYAG-NASNSSMGALCMTGTL 452
           S K      V  + A  N  +  +   C + +L
Sbjct: 361 SPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSL 393

>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)|
          Length = 731

 Score = 98.6 bits (244), Expect = 7e-21
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
 Frame = +3

Query: 6   PRARVATYKVCWVGGCFSSDILKGMEVAVAXXXXXXXXXXXXXX-XXYYRDSIAVGAYSA 182
           P AR+A YKVCW  GC  +DIL   + A+A                 Y+ D+IA+G++ A
Sbjct: 235 PLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHA 294

Query: 183 MEKGIFVSCSAGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKYDGVS---- 350
           +E+GI  S SAGN GP   +  + +PW+ +V A T+DR F   V +GNG  + GVS    
Sbjct: 295 VERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTF 354

Query: 351 ------LYSGKQLPTT 380
                 L SG+ +P T
Sbjct: 355 DNQYYPLVSGRDIPNT 370

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -2

Query: 415 LDAFPA*MNGTGVVGNCLPL*RETPSYLLPLPRVT*AGKSRSSVPAPTVVIQGAPFVSDA 236
           L+   A +N        + L    P+ LLPLP+            AP  VIQ  PFV  A
Sbjct: 198 LNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPA----------APGTVIQTPPFVGAA 247

Query: 235 A-PGPAFPAEQETKIPFSMALYAP 167
           A P PA P+      P + A   P
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPP 271

>POXB_STRPN (Q54970) Pyruvate oxidase (EC 1.2.3.3) (Pyruvic oxidase) (POX)|
          Length = 591

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
 Frame = +3

Query: 147 YRDSIAVGAYSAMEKGIFVSCSAGNAGPGAASLTNG--------APWITTVGAGTLDR-D 299
           + ++ A+ A    + G  +  + G+ GPGA  L NG         P++  +G+  ++  +
Sbjct: 52  HEETGALAAVMQAKFGGSIGVAVGSGGPGATHLINGVYDAAMDNTPFLAILGSRPVNELN 111

Query: 300 FPAYVTLGNGNKYDGVSLYS-----GKQLP 374
             A+  L     Y+G+++Y+      +QLP
Sbjct: 112 MDAFQELNQNPMYNGIAVYNKRVAYAEQLP 141

>HXD12_MOUSE (P23812) Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6)|
          Length = 279

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = +3

Query: 174 YSAMEKGIFVSCSAGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKYDGV-- 347
           +SA++   +     G   PG+A+L  GAP      A +   D    + L    +  GV  
Sbjct: 127 HSALKGTKYDYAGVGRTAPGSATLLQGAPC-----ASSFKEDTKGPLNLNMAVQVAGVAS 181

Query: 348 ----SLYSGKQLPTTPVPFIYAGNAS 413
               SL  GKQ P +P P +  G A+
Sbjct: 182 CLRSSLPDGKQCPCSPKPGLPWGGAA 207

>YKQA_BACSU (P39759) Hypothetical UPF0131 protein ykqA|
          Length = 277

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 434 ERAHAAVGRVPCVDERHRRGGQLLAAVEGDAVVF 333
           E+ H  + +  C++E+ R  G L AA EG  VVF
Sbjct: 15  EKNHHLLAQSACINEQARTKGSLFAAKEGPTVVF 48

>COL13_CAEEL (P20631) Cuticle collagen 13 precursor|
          Length = 316

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 147 YRDSIAVGAYSAMEKGIFVSCSAGNAGPGAASLTNGAP 260
           Y +  AVG +     G   SC +G AGP  +   +GAP
Sbjct: 105 YGNDAAVGGFGGSSGGSCCSCGSGAAGPAGSPGQDGAP 142

>COL12_CAEEL (P20630) Cuticle collagen 12 precursor|
          Length = 316

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 147 YRDSIAVGAYSAMEKGIFVSCSAGNAGPGAASLTNGAP 260
           Y +  AVG +     G   SC +G AGP  +   +GAP
Sbjct: 105 YGNDAAVGGFGGSSGGSCCSCGSGAAGPAGSPGQDGAP 142

>YQS6_CAEEL (Q09541) Hypothetical subtilase-type proteinase F21H12.6 in|
           chromosome II (EC 3.4.21.-)
          Length = 1374

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = +3

Query: 189 KGIFVSCSAGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKYDGVSLYSGKQ 368
           +G+   CSAGN GP  A  T GAP  TT G   +     AY+T  + +   GV     K 
Sbjct: 402 RGVIYVCSAGNQGP--ALSTVGAPGGTTTGVIGIG----AYLTSESADTLYGVY----KP 451

Query: 369 LPTTPVPFIYAGNASNSSMG 428
           + ++  P+   G   +  +G
Sbjct: 452 VESSIYPWSSRGPCQDGKLG 471

>TNFL8_MOUSE (P32972) Tumor necrosis factor ligand superfamily member 8 (CD30|
           ligand) (CD30-L) (CD153 antigen)
          Length = 239

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 112 SPSPSAVARLTTTATASPWARTAPWK 189
           +PSP    ++   + ASPW  T PW+
Sbjct: 13  APSPDPAMQVQPGSVASPWRSTRPWR 38

>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)|
          Length = 3336

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 371 AHHAGAVHLRRERVQQQHGRALHD 442
           +HH  A+   RE +Q +HGR L D
Sbjct: 410 SHHQAAIEKLREDLQSEHGRCLED 433

>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 382 GVVGNCLPL*RETPSYLLPLPRVT*AGKSRSSVPAPTVVIQGAPFVSDAAPGPAFPAEQE 203
           GVV  CL          +P P++  +G   +    P  V+ G P V  A P P+ P+   
Sbjct: 464 GVVQPCLGPAGAGQPQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVST 523

Query: 202 TKI 194
           T +
Sbjct: 524 TSV 526

>NRG3_MOUSE (O35181) Pro-neuregulin-3, membrane-bound isoform precursor|
           (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)]
          Length = 713

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 343 PSYLLPLPRVT*AGKSRSSVPAPTVVIQGAPFVSDAAPG--PAFPAEQETKI--PFSMAL 176
           P + +P+     +  +R++   PTV+   APF S + PG  P  P    T+    +  A 
Sbjct: 169 PGHRVPIRASPRSTTARNTAAPPTVLSTTAPFFSSSTPGSRPPMPGAPSTQAMPSWPTAA 228

Query: 175 YAPTAML 155
           YA ++ L
Sbjct: 229 YATSSYL 235

>EOMES_MOUSE (O54839) Eomesodermin homolog|
          Length = 688

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 337 YLLPLPRVT*AGKSRSSVPAPTVVIQGAPFVSDAAPGPAFPAEQETKIPFSMAL 176
           Y LP P     G   S + AP  + Q  P  + AA GP +PA    + P+   L
Sbjct: 146 YYLPSP-----GPQGSELAAPCSLFQ-YPAAAGAAHGPGYPASNGARYPYGSML 193

>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25)
          Length = 790

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 213 AGNAGPGAASLTNGAPWITTVGAGTLDRDFPAYVTLGNGNKY---DGVSLYSGKQLPTTP 383
           AGNAGPG          +T V  G++ +++ AY     G+++   D ++  +G+    +P
Sbjct: 132 AGNAGPG----------MTAVPPGSVQQNWSAYGNTDGGSRFAALDQINRSNGRPAAGSP 181

Query: 384 VPFIYAGNASNSSMGA 431
            P      A++   GA
Sbjct: 182 GPTTPGEIANSDGNGA 197

>ISPDF_DESPS (Q6ARN9) IspD/ispF bifunctional enzyme [Includes:|
           2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT);
           2-C-methyl-D-erythritol 2,4-cyclod
          Length = 433

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 171 AYSAMEKGIFVSCSAGNAGPGAASLTNGAPWITTVGAGT-LDRDFP 305
           AYS +    FVS   GN  P    + NGA  I   G+GT +  D+P
Sbjct: 25  AYSPLRTFFFVS-KQGNISPQDRKMKNGAVIIPAAGSGTRMKLDYP 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,953,742
Number of Sequences: 219361
Number of extensions: 919640
Number of successful extensions: 3066
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3057
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)