>KCNAS_DROME (P08510) Potassium voltage-gated channel protein Shaker|
          Length = 655

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -1

Query: 187 ARGRADLPEREVERLGLDGVGA-----GEDERRGRGHIVAGDQQRLGRVAH 50
           A  +  L E++++R  LDG G+      +DE  G GH   G  Q    + H
Sbjct: 41  AERKLQLREQQLQRNSLDGYGSLPKLSSQDEEGGAGHGFGGGPQHFEPIPH 91

>Y105_DROME (Q9V719) Hypothetical protein CG10105|
          Length = 569

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 168 CQSGKSNASASTASAREKTNGAAVAIS*QGISSGLAASRTVR 43
           C S   NAS +T +A   + G A + S  G SSGL +S  +R
Sbjct: 478 CTSAPINASVTTLNAGSGSGGIAHSPSSPGHSSGLFSSSNIR 519

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 196 PHPARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           P P+RGR +   R+    G  G G+G    RG     +G    LG
Sbjct: 541 PSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHSSGLG 585

>HYPF2_RALEU (O07451) Carbamoyltransferase hypF2 (EC 2.1.3.-) (Carbamoyl|
           phosphate-converting enzyme hypF2) ([NiFe]-hydrogenase
           maturation factor hypF2) (Hydrogenase maturation protein
           hypF2)
          Length = 806

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 145 LGLDGVGAGEDERRGRGHIVAGDQQRL 65
           L LDGVG G+D +   G   AG ++RL
Sbjct: 536 LALDGVGLGDDGQAWGGETAAGGRRRL 562

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 207 TSAGPTPHAAAQTCQSGKSNASASTASAREKTNGAAVAIS 88
           TSA  +  AAA +  S  S+AS+++AS  E T  A+ A S
Sbjct: 370 TSAESSKTAAASSASSAASSASSASASKDEATRQASAAKS 409

>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta)
          Length = 797

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = -2

Query: 204 SAGPTPHAAAQTCQSGKSNASASTA---SAREK----TNGAAVAIS*QGISSGLAASRTV 46
           +A PTP +A +    GK+ A    A   SAR +    ++G+A     + + +G A   + 
Sbjct: 77  AASPTPQSAQEPSAPGKAEAGGEQARHPSARAEEEGGSDGSAAEAEPRALENGEADEPSF 136

Query: 45  RSPNTFLNTASGRE 4
             P  F++  S  E
Sbjct: 137 SDPEDFVDDVSEEE 150

>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1)
          Length = 509

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 103 GRGHIVAGDQQRLGRVAHGEVPEHLLEHRLG 11
           G G +   D++ +  VA G +P H LE RLG
Sbjct: 87  GGGMMEGDDEEIVAAVASGALPSHRLESRLG 117

>PWP2_MOUSE (Q8BU03) Periodic tryptophan protein 2 homolog|
          Length = 919

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -1

Query: 223 PVEGRHLGRPHPARG-RADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLGRVAHG 47
           P EG  L  P   RG +AD+ +RE E    D    G+ E   RG     +Q+R+G+V + 
Sbjct: 220 PPEGLRLKAP---RGWKADILQREKEEEEEDEE-EGDRETTIRGKTTPAEQERVGKVKYS 275

Query: 46  EVPEHLL 26
            + ++ L
Sbjct: 276 RLAKYFL 282

>STAD_SOLCO (Q41319) Acyl-[acyl-carrier-protein] desaturase, chloroplast|
           precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)
          Length = 393

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -1

Query: 181 GRADLPEREVERLGLDGVGAGEDERRGR----GHIVAGDQQRLGRVAHGEVPEHLLEH 20
           GR D+  R++E+     +G+G D R       G I    Q+R   ++HG    H  EH
Sbjct: 188 GRVDM--RQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARHAKEH 243

>YDYD_SCHPO (O13692) Hypothetical protein C11E3.13c precursor|
          Length = 510

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 195 PTPHAAAQTCQSGKSNASASTASAREKTNG---AAVAIS*QGISSGLAASRTVRSPNTFL 25
           P PH+ + T  +    A+ S +S    ++G   A+   S   +SSG + S    S +T  
Sbjct: 404 PGPHSVSTTINTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSY 463

Query: 24  NTASG 10
            +ASG
Sbjct: 464 TSASG 468

>CAPP_AZOSE (Q5P7H5) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 916

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 109 RRGRGHIVAGDQQRLGRVAHGEV 41
           RR R H++AG   R G VAH  V
Sbjct: 94  RRSRAHLIAGSAPREGSVAHALV 116

>EF1A_ARCFU (O29325) Elongation factor 1-alpha (EF-1-alpha) (Elongation|
          factor Tu) (EF-Tu)
          Length = 423

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 97 GHIVAGDQQRLGRVAH--GEVPEHLLE 23
          GH+  G    +GR+ +  GE+PEH++E
Sbjct: 14 GHVDHGKSTLIGRLLYETGEIPEHIIE 40

>DNAK_PASMU (P57870) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 634

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 204 SAGPTPHAAAQTCQSGKSNASASTASARE 118
           +A P P A AQ  QSGKSN     A   E
Sbjct: 601 AAQPQPEAQAQQAQSGKSNDDVVDAEFEE 629

>Y104_ADE07 (P05666) Hypothetical 10.4 kDa early protein|
          Length = 95

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -1

Query: 166 PEREVERLGLDGVGAGE-----DERRGRGHIVAGDQQRL 65
           PE EV  L + G+G  E     ++  G GH ++GD +RL
Sbjct: 28  PELEVRPLLVGGIGQSESNIIEEDLTGPGHEISGDFKRL 66

>PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5)|
          Length = 1096

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 207  TSAGPTPHAA--AQTCQSGKSNASASTASAREKTNGAAVAIS*QGISSGLAASRTVRSPN 34
            TSA  TP +   A T  +  + AS STAS++    G++     +  SS L A     +  
Sbjct: 973  TSASTTPASTTPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSL-ADHEYTAAG 1031

Query: 33   TFLNTASGR 7
            TF  + +GR
Sbjct: 1032 TFSGSQAGR 1040

>NUPL2_CHICK (Q5ZI22) Nucleoporin-like 2|
          Length = 413

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 192 TPHAAAQTCQSGKSNASASTASAREKTNGAAVAIS*QGISSGLAASR 52
           TP AA  T QSG S+ASA+  +     +G  V  +   + +G+A+ +
Sbjct: 332 TPSAATGTSQSGASSASAAQTAG---ASGHNVTSAPSAVPNGIASDK 375

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 187 ARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           A G   +    +ER+GL+ +GA   ER G   + A   +R+G
Sbjct: 551 ATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMG 592

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 187 ARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           A G   +    +ER+GL+ +GA   ER G   + A   +R+G
Sbjct: 511 ATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMG 552

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 187 ARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           A G   +    +ER+GL+ +GA   ER G   + A   +R+G
Sbjct: 550 ATGLERMGANNLERMGLERMGANSLERMGLERMGANSLERMG 591

>MKL_MYCTU (P63357) Probable ribonucleotide transport ATP-binding protein mkl|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 199 RPHPARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           R H  +  +++ +  +E+L L  VG G DE++  G I  G ++R G
Sbjct: 130 REHTKKKESEIRDIVMEKLAL--VGLGGDEKKFPGEISGGMRKRAG 173

>MKL_MYCBO (P63358) Probable ribonucleotide transport ATP-binding protein mkl|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 199 RPHPARGRADLPEREVERLGLDGVGAGEDERRGRGHIVAGDQQRLG 62
           R H  +  +++ +  +E+L L  VG G DE++  G I  G ++R G
Sbjct: 130 REHTKKKESEIRDIVMEKLAL--VGLGGDEKKFPGEISGGMRKRAG 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,633,568
Number of Sequences: 219361
Number of extensions: 482104
Number of successful extensions: 2226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)