ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast79d08 |
|---|---|
| Clone Library Name | barley_pub |
>P1_ARATH (Q39172) Probable NADP-dependent oxidoreductase P1 (EC 1.3.1.74)| Length = 345 Score = 129 bits (324), Expect = 4e-30 Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%) Frame = +2 Query: 98 SRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDG--SVLVKNLYLSCDPYMRPKMSRP--- 262 +++V+LKDYV G+PTE+ + +G SVLVKNLYLSCDPYMR +M +P Sbjct: 5 NKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPS 64 Query: 263 ---LHQSYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAML 433 L Q+YT PG PI GYGVS ++ S P GDL+WG+ WE+YSVI P T Sbjct: 65 TAALAQAYT----PGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVI-TPMTHAH 119 Query: 434 TKIQPDDGVPLSYYTGVLGM 493 KIQ D VPLSYYTG+LGM Sbjct: 120 FKIQHTD-VPLSYYTGLLGM 138
>P2_ARATH (Q39173) Probable NADP-dependent oxidoreductase P2 (EC 1.3.1.74)| Length = 343 Score = 128 bits (322), Expect = 7e-30 Identities = 70/135 (51%), Positives = 86/135 (63%), Gaps = 3/135 (2%) Frame = +2 Query: 98 SRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGS--VLVKNLYLSCDPYMRPKMSRPLHQ 271 +++V+ KD+V G+P E+ +GS VLVKNLYLSCDPYMR +M +P Sbjct: 4 NKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMGKPDPS 63 Query: 272 SYTA-AFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQP 448 S A A+ PG PI GYGVS V+ S P GDL+WG+ GWE+YSVI P M KIQ Sbjct: 64 SALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVI-TPMAHMHFKIQH 122 Query: 449 DDGVPLSYYTGVLGM 493 D VPLSYYTG+LGM Sbjct: 123 TD-VPLSYYTGLLGM 136
>YNCB_ECOLI (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-)| Length = 353 Score = 64.3 bits (155), Expect = 2e-10 Identities = 48/133 (36%), Positives = 65/133 (48%) Frame = +2 Query: 95 KSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQS 274 ++RR VL G P + L V +G VL++ +YLS DPYMR +MS S Sbjct: 15 RNRRWVLASRPHGAPVPENFRL-EEDDVATPGEGQVLLRTVYLSLDPYMRGRMSD--EPS 71 Query: 275 YTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPDD 454 Y+ G + G VS VV S+ P +GD V G +GW+DY + L K+ Sbjct: 72 YSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGD---DLVKLGDHP 128 Query: 455 GVPLSYYTGVLGM 493 P S+ GVLGM Sbjct: 129 QNP-SWSLGVLGM 140
>LTB4D_CAVPO (Q9EQZ5) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (LTB4) (12-HD) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (PGR) Length = 329 Score = 58.5 bits (140), Expect = 9e-09 Identities = 41/134 (30%), Positives = 62/134 (46%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 +K++ LK + +G PT++ EL + ++G VL++ L+LS DPYMR R Sbjct: 2 VKAKSWTLKKHFQGKPTQSDFEL-KTVELPPLKNGEVLLEALFLSVDPYMRIASKR---- 56 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 GA + G V+ VV S AG +V +GW + + L PD Sbjct: 57 -----LKEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 K-LPLSLALGTIGM 124
>LTB4D_RABIT (Q28719) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (ADRAB-F) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 349 Score = 58.5 bits (140), Expect = 9e-09 Identities = 41/134 (30%), Positives = 61/134 (45%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 ++++ LK + G+PT++ EL + +G VL++ L+LS DPYMR R Sbjct: 2 VRAKNWTLKKHFHGHPTDSDFEL-KTVELPPLNNGEVLLEALFLSVDPYMRLGSKR---- 56 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 G + G V+ VV S P G LV +GW +S+ L PD Sbjct: 57 -----LKEGDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 T-LPLSLALGTVGM 124
>LTB4D_HUMAN (Q14914) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 57.4 bits (137), Expect = 2e-08 Identities = 40/134 (29%), Positives = 62/134 (46%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 ++++ LK + GYPT + EL A + ++G VL++ L+L+ DPYMR R Sbjct: 2 VRTKTWTLKKHFVGYPTNSDFEL-KTAELPPLKNGEVLLEALFLTVDPYMRVAAKR---- 56 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 G + G V++VV S + G +V GW +S+ L PD Sbjct: 57 -----LKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 T-IPLSLALGTVGM 124
>LTB4D_RAT (P97584) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (Dithiolethione-inducible gene 1 protein) (D3T-inducible gene 1 protein) (DIG-1) Length = 329 Score = 56.6 bits (135), Expect = 4e-08 Identities = 39/134 (29%), Positives = 62/134 (46%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 ++++ LK + EG+PT+++ EL + +G VL++ L+LS DPYMR + Sbjct: 2 VQAKTWTLKKHFEGFPTDSNFELR-TTELPPLNNGEVLLEALFLSVDPYMRVAAKK---- 56 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 G + G V+ VV S G +V + GW +S+ L PD Sbjct: 57 -----LKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 K-LPLSLALGTVGM 124
>LTB4D_MOUSE (Q91YR9) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 55.8 bits (133), Expect = 6e-08 Identities = 39/134 (29%), Positives = 61/134 (45%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 ++++ LK + EG+PT+ + EL + +G VL++ L+LS DPYMR + Sbjct: 2 VQAKSWTLKKHFEGFPTDGNFEL-KTTELPPLNNGEVLLEALFLSVDPYMRVAAKK---- 56 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 G + G V+ VV S G +V + GW +S+ L PD Sbjct: 57 -----LKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 K-LPLSLALGTVGM 124
>LTB4D_PIG (Q29073) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 53.5 bits (127), Expect = 3e-07 Identities = 39/134 (29%), Positives = 64/134 (47%) Frame = +2 Query: 92 LKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQ 271 ++++ LK + GYPT ++ EL + ++G VL++ L+L+ DPYMR +R L + Sbjct: 2 VRAKSWTLKKHFVGYPTPSNFEL-KTVELPPLKNGEVLLEALFLTVDPYMR-IAARKLKE 59 Query: 272 SYTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPD 451 G + G V+ V+ S G +V + GW +S+ L PD Sbjct: 60 --------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPD 111 Query: 452 DGVPLSYYTGVLGM 493 +PLS G +GM Sbjct: 112 T-LPLSLTLGTVGM 124
>ZADH1_MOUSE (Q8VDQ1) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 52.0 bits (123), Expect = 9e-07 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Frame = +2 Query: 101 RRVVLKDYV--EGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQS 274 +RVVL G P + + + +D +G V V+ LYLS DPYMR KM+ Sbjct: 4 QRVVLNSRPGKNGNPVAENFRVEEFSLLDALNEGQVQVRTLYLSVDPYMRCKMNEDTGTD 63 Query: 275 YTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGM-TGWEDYSVIKAPFTAMLTKIQPD 451 Y A + G G+ V S +A GD V W+ +++ L K+ P Sbjct: 64 YLAPWQLAQVADGGGIGIVEESKHQKLAKGDFVTSFYWPWQTKAILDG---NGLEKVDPQ 120 Query: 452 --DGVPLSYYTGVLGM 493 DG LSY+ G +GM Sbjct: 121 LVDG-HLSYFLGAIGM 135
>YMN1_YEAST (Q03102) Hypothetical 40.0 kDa protein in COX14-COS3 intergenic| region Length = 365 Score = 51.6 bits (122), Expect = 1e-06 Identities = 30/104 (28%), Positives = 52/104 (50%) Frame = +2 Query: 179 DEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQSYTAAFVPGAPITGYGVSEVVRSSTPGVA 358 ++ +DG +L++ YLS DP + +S + ++Y PG I G+ +V+ S + Sbjct: 40 EQLKDGELLLETTYLSNDPAQKFWISS-MDKNYAKGVQPGEIIPARGIGKVLASRNKAFS 98 Query: 359 AGDLVWGMTGWEDYSVIKAPFTAMLTKIQPDDGVPLSYYTGVLG 490 GD V +TGW +++I L K+ + L +Y VLG Sbjct: 99 PGDYVSAVTGWTTHAIISQENVQGLRKLDKNKVGKLWWYLSVLG 142
>ZADH1_PONPY (Q5R806) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 48.5 bits (114), Expect = 1e-05 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 5/136 (3%) Frame = +2 Query: 101 RRVVLKDYV--EGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQS 274 +RVVL G P + + D +G V V+ LYLS DPYMR +M+ Sbjct: 4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTD 63 Query: 275 YTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGM-TGWEDYSVIKAPFTAMLTKIQPD 451 Y + + G G+ + S + GD V W+ ++ L K+ P Sbjct: 64 YITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDG---NSLEKVDPQ 120 Query: 452 --DGVPLSYYTGVLGM 493 DG LSY+ G +GM Sbjct: 121 LVDG-HLSYFLGAIGM 135
>ZADH1_HUMAN (Q8N8N7) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 48.5 bits (114), Expect = 1e-05 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 5/136 (3%) Frame = +2 Query: 101 RRVVLKDYV--EGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQS 274 +RVVL G P + + D +G V V+ LYLS DPYMR +M+ Sbjct: 4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTD 63 Query: 275 YTAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGM-TGWEDYSVIKAPFTAMLTKIQPD 451 Y + + G G+ + S + GD V W+ ++ L K+ P Sbjct: 64 YITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDG---NSLEKVDPQ 120 Query: 452 --DGVPLSYYTGVLGM 493 DG LSY+ G +GM Sbjct: 121 LVDG-HLSYFLGAIGM 135
>SYE_TOBAC (Q43794) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 569 Score = 30.8 bits (68), Expect = 2.1 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Frame = +2 Query: 188 EDGSVLVKN---LYLSCDPYMRPKMSRPLHQSYTAAFVPGAPITGYGVSEVVRS----ST 346 +D +L+K+ L + + +S PL++ T A G PI GVSEV +S Sbjct: 409 QDAVLLLKDGIDLITDSEKALSSLLSYPLYE--TLASAEGKPILEDGVSEVAKSLLAAYD 466 Query: 347 PGVAAGDLVWGMTGWEDYS 403 G +G L G GW+ ++ Sbjct: 467 SGELSGALAEGQPGWQKWA 485
>JHD1_USTMA (Q4P5U1) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 669 Score = 30.8 bits (68), Expect = 2.1 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 17/98 (17%) Frame = +2 Query: 158 LLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSR----------PLHQSYTAAFVPGAPI 307 L+PA P ++ V K ++ P RPK +R P H S VP + Sbjct: 216 LVPAPPDRSSQAPHVQAKAEDVAASPVPRPKPARAKKQATHRLVPCHTSIPGMVVPPPEM 275 Query: 308 TGYGVSEVVRSSTP-------GVAAGDLVWGMTGWEDY 400 + + V++++ TP ++ W ++ W +Y Sbjct: 276 SIFDVADIIGHDTPVEVIDVASQSSSKASWTISEWAEY 313
>MATB_NEUCR (P36981) Mating- type protein a-1 (Mt a-1)| Length = 382 Score = 30.0 bits (66), Expect = 3.5 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Frame = +2 Query: 134 YPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQSYTAAFV--PGAPI 307 Y + H E+ P + SV+V N++ P++R K ++ T + P Sbjct: 126 YRKDHHREIREQNPGLHNNEISVIVGNMWRDEQPHIREKYFNMSNEIKTRLLLENPDYRY 185 Query: 308 TGYGVSEVVRSSTPGVAA--------GDLVWGMTGWEDYSVIKAPFTAMLTKIQPDDG 457 ++ R +P + G+L+WG ED ++I+ F ++ + DDG Sbjct: 186 NPRRSQDIRRRVSPYLKIKLLNYDVNGNLLWGTVNAEDAALIRTHFHGVVRVEEMDDG 243
>MYO1A_MOUSE (O88329) Myosin Ia (Brush border myosin I) (BBM-I) (BBMI) (Myosin I| heavy chain) (MIHC) (Fragment) Length = 909 Score = 29.6 bits (65), Expect = 4.6 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +2 Query: 71 RRRSMAELKSRRVVLKD-YVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMR 244 R S K++ +LK + EG P EA ++ P A +VL+KNLY Y+R Sbjct: 529 RDLSQTMWKAQHPLLKSLFPEGNPKEASLKRPPTAGTQFKNSVAVLMKNLYSKNPNYIR 587
>TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing protein 3| (ERIC-1) Length = 838 Score = 29.6 bits (65), Expect = 4.6 Identities = 19/85 (22%), Positives = 37/85 (43%) Frame = +2 Query: 65 PRRRRSMAELKSRRVVLKDYVEGYPTEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMR 244 P ++ L+ + +D E T A ++ L ++ ++ ++LYL DP +R Sbjct: 509 PTHQQGQPALELKEESFRDPAEVLGTGAEVDYLEQFGTSSFKESALRKQSLYLKFDPLLR 568 Query: 245 PKMSRPLHQSYTAAFVPGAPITGYG 319 RP+ + + + GA T G Sbjct: 569 DSPGRPVPVATETSSMHGANETPSG 593
>P60_LISGR (Q01835) Protein p60 precursor (Invasion-associated protein)| Length = 511 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +2 Query: 278 TAAFVPGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGWEDYSVIKAPFTAMLTKIQPDDG 457 T G +T + VV ++T VA+GD +WG+ +V + L K+ D Sbjct: 7 TIVSAAGIAVTAFAAPSVVSANTVVVASGDTLWGIASKTGTTVDQ---LKQLNKLDSDRI 63 Query: 458 VP 463 VP Sbjct: 64 VP 65
>ASK1_ASHGO (Q75DE8) DASH complex subunit ASK1 (Outer kinetochore protein ASK1)| (Associated with spindles and kinetochores protein 1) Length = 181 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = +2 Query: 140 TEAHMELLPAAPVDEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQSY----TAAFVPGAP 304 TE H+ +P + DE +DGS L + + R K+S L Q Y +++FV +P Sbjct: 102 TEGHVLAVPVSSDDEPDDGSTLQRQ-------HKRRKLSLQLQQRYGSSSSSSFVSRSP 153
>MOLR_ECOLI (P33345) Molybdate metabolism regulator| Length = 1264 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2 Query: 47 ARSPVHPRRRRSMAELKSRRVVLKDYVEGYPTEAHMELLPAAP--VDEAEDGS 199 A S + P R+ +LK+ R + ++ YP A LLPAAP EA+D + Sbjct: 678 AASELAPAVARAFNKLKTLRENARSWLLKYPEHALTGLLPAAPGKAGEAQDNA 730
>RUVC_NITOC (Q3JES5) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 174 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +2 Query: 293 PGAPITGYGVSEVVRSSTPGVAAGDLVWGMTGW-EDYSVIKAPFTAMLTKIQPDD 454 PG+ ITGYG+ E T +AAG + G G E I T ++ PD+ Sbjct: 9 PGSRITGYGLIETNNKKTVYIAAGCIRAGEGGLAERLGQIFQGITGIIQAYHPDE 63
>SPD3_MOUSE (Q6P6N5) Sprouty-related, EVH1 domain-containing protein 3| (Spred-3) Length = 408 Score = 28.9 bits (63), Expect = 7.8 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 6/134 (4%) Frame = +2 Query: 17 RSRSVALHRLARSPVHPRRRRSMA----ELKSRRVVLKDYVEGYPTEAH--MELLPAAPV 178 +S AL L+R + P S + + L +V+ + +H E P AP+ Sbjct: 104 KSLLAALAALSRGSLTPSSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPTAPI 163 Query: 179 DEAEDGSVLVKNLYLSCDPYMRPKMSRPLHQSYTAAFVPGAPITGYGVSEVVRSSTPGVA 358 E + RP+ R QSY P P TG + S Sbjct: 164 ATVESAAAFPLAT--------RPQRRRSSAQSYP----PLLPFTG-----IPEPSESLAG 206 Query: 359 AGDLVWGMTGWEDY 400 AG WG G+EDY Sbjct: 207 AGSQGWGSRGYEDY 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,814,908 Number of Sequences: 219361 Number of extensions: 862389 Number of successful extensions: 2902 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2825 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2885 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
